Wall clock time and date at job start Fri Apr 10 2020 22:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47454 * 2 1 4 4 C 1.53001 * 109.47454 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46690 * 304.99745 * 4 3 2 6 6 C 1.53005 * 109.46980 * 185.00149 * 4 3 2 7 7 N 1.46499 * 109.47011 * 64.99811 * 4 3 2 8 8 C 1.46756 * 124.34744 * 239.99902 * 7 4 3 9 9 C 1.54485 * 105.47002 * 163.01052 * 8 7 4 10 10 H 1.09002 * 110.96930 * 143.57380 * 9 8 7 11 11 C 1.50703 * 110.96621 * 267.29250 * 9 8 7 12 12 O 1.20829 * 120.00166 * 0.02562 * 11 9 8 13 13 O 1.34232 * 119.99932 * 179.97438 * 11 9 8 14 14 C 1.45196 * 116.99674 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47008 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47348 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46919 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 89.99934 * 21 19 17 23 23 H 1.48499 * 109.47026 * 209.99782 * 21 19 17 24 24 H 1.48496 * 109.47474 * 329.99818 * 21 19 17 25 25 C 1.54624 * 101.76527 * 25.41295 * 9 8 7 26 26 C 1.34423 * 124.34630 * 60.02852 * 7 4 3 27 27 O 1.21274 * 124.94465 * 0.37915 * 26 7 4 28 28 H 1.09007 * 109.47098 * 299.99907 * 1 2 3 29 29 H 1.08997 * 109.46790 * 59.99742 * 1 2 3 30 30 H 1.09001 * 109.46715 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47316 * 239.99995 * 2 1 3 32 32 H 1.09007 * 109.47420 * 119.99929 * 2 1 3 33 33 H 1.09007 * 109.46893 * 59.99967 * 3 2 1 34 34 H 1.09001 * 109.47063 * 300.00612 * 3 2 1 35 35 H 1.08997 * 109.47291 * 59.99828 * 6 4 3 36 36 H 1.08995 * 109.46689 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.46699 * 299.99706 * 6 4 3 38 38 H 1.08998 * 110.25094 * 44.00946 * 8 7 4 39 39 H 1.09004 * 110.24949 * 282.00448 * 8 7 4 40 40 H 1.09001 * 109.47508 * 60.00739 * 14 13 11 41 41 H 1.09000 * 109.47330 * 300.00023 * 14 13 11 42 42 H 1.09004 * 109.47107 * 59.99919 * 15 14 13 43 43 H 1.09000 * 109.46866 * 300.00028 * 15 14 13 44 44 H 1.09000 * 109.46497 * 60.00162 * 16 15 14 45 45 H 1.08999 * 109.46623 * 300.00226 * 16 15 14 46 46 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 47 47 H 1.09000 * 110.48297 * 93.88519 * 25 9 8 48 48 H 1.09008 * 110.48523 * 216.52467 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0801 2.8795 0.1251 7 7 4.0579 0.8589 -1.2527 8 6 4.9050 -0.3367 -1.3343 9 6 4.8002 -0.8169 -2.7988 10 1 5.7531 -1.2144 -3.1482 11 6 3.7034 -1.8387 -2.9541 12 8 3.0476 -2.1715 -1.9954 13 8 3.4543 -2.3783 -4.1577 14 6 2.3830 -3.3555 -4.2330 15 6 2.2490 -3.8554 -5.6728 16 6 1.1205 -4.8855 -5.7521 17 6 0.9881 -5.3774 -7.1704 18 1 1.6431 -4.9934 -7.9385 19 6 0.0302 -6.3170 -7.4876 20 7 -0.7716 -6.7798 -6.5535 21 14 -0.1344 -6.9262 -9.2458 22 1 0.7377 -8.1120 -9.4424 23 1 -1.5468 -7.3012 -9.5096 24 1 0.2752 -5.8497 -10.1831 25 6 4.4431 0.4946 -3.5359 26 6 3.7874 1.3501 -2.4744 27 8 3.1154 2.3355 -2.6937 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.7172 3.3137 1.0567 36 1 5.1701 2.8795 0.1242 37 1 3.7164 3.4690 -0.7165 38 1 4.5362 -1.1073 -0.6573 39 1 5.9377 -0.0845 -1.0931 40 1 1.4468 -2.8931 -3.9200 41 1 2.6106 -4.1955 -3.5768 42 1 3.1852 -4.3178 -5.9855 43 1 2.0215 -3.0155 -6.3293 44 1 0.1842 -4.4234 -5.4393 45 1 1.3484 -5.7253 -5.0956 46 1 -0.6864 -6.4633 -5.6406 47 1 5.3445 0.9781 -3.9124 48 1 3.7464 0.2969 -4.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919585160.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:34 Heat of formation + Delta-G solvation = -155.248444 kcal Electronic energy + Delta-G solvation = -26661.629059 eV Core-core repulsion = 22908.435871 eV Total energy + Delta-G solvation = -3753.193187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40959 -39.94022 -37.02577 -36.63016 -35.87830 -34.34380 -33.07145 -31.75098 -30.36253 -28.11292 -26.93528 -26.82061 -24.38236 -22.87048 -22.76184 -21.49901 -20.76112 -20.43320 -19.18698 -18.02116 -17.12991 -17.05517 -16.55310 -16.41830 -15.79055 -15.28446 -14.90509 -14.42257 -14.15280 -14.06914 -13.84162 -13.75964 -13.62831 -13.26851 -13.09271 -12.86723 -12.83620 -12.36890 -12.27373 -12.15356 -12.04676 -11.90437 -11.69263 -11.60426 -11.17705 -10.99730 -10.93020 -10.85584 -10.72245 -10.53008 -10.43636 -10.15921 -9.92675 -9.90195 -9.82342 -8.96738 -8.63678 -8.37208 -6.40910 -4.10957 2.08226 2.33626 2.56926 2.71090 3.41931 3.45801 3.61622 3.85526 3.95205 4.33192 4.46029 4.51354 4.60148 4.73489 4.82338 4.92152 5.04739 5.06355 5.16595 5.21551 5.30083 5.34334 5.35493 5.40562 5.41759 5.42610 5.45027 5.49616 5.63793 5.76020 5.81306 5.83427 5.91342 6.07666 6.14219 6.26370 6.35404 6.35845 6.41161 6.65180 6.79250 6.86355 7.28439 7.39953 7.72056 7.93820 8.13567 8.41169 8.82761 9.61462 10.99852 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.002643 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.778172 B =10591.998436 C =11170.684756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.136 4.136 4 C 0.158 3.842 5 H 0.088 0.912 6 C -0.167 4.167 7 N -0.610 5.610 8 C 0.113 3.887 9 C -0.099 4.099 10 H 0.136 0.864 11 C 0.462 3.538 12 O -0.499 6.499 13 O -0.353 6.353 14 C 0.069 3.931 15 C -0.102 4.102 16 C 0.011 3.989 17 C -0.603 4.603 18 H 0.052 0.948 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 1.073 2.927 22 H -0.287 1.287 23 H -0.284 1.284 24 H -0.288 1.288 25 C -0.147 4.147 26 C 0.518 3.482 27 O -0.524 6.524 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.269 0.731 47 H 0.120 0.880 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.304 16.901 14.864 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.175 4.175 4 C 0.056 3.944 5 H 0.106 0.894 6 C -0.225 4.225 7 N -0.345 5.345 8 C -0.010 4.010 9 C -0.118 4.118 10 H 0.154 0.846 11 C 0.304 3.696 12 O -0.387 6.387 13 O -0.269 6.269 14 C -0.004 4.004 15 C -0.140 4.140 16 C -0.026 4.026 17 C -0.641 4.641 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.901 3.099 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.214 1.214 25 C -0.187 4.187 26 C 0.306 3.694 27 O -0.400 6.400 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.079 0.921 47 H 0.138 0.862 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.818 16.306 14.116 25.089 hybrid contribution 0.855 0.791 1.133 1.625 sum 13.673 17.097 15.249 26.679 Atomic orbital electron populations 1.21726 0.95983 1.01686 1.01296 1.21557 0.95905 0.96008 1.02896 1.22056 0.94013 0.98087 1.03301 1.21012 0.94406 0.94306 0.84648 0.89403 1.22176 1.01085 0.96110 1.03108 1.48334 1.51008 1.28752 1.06393 1.22090 0.95554 0.88012 0.95346 1.21965 0.98696 0.93652 0.97535 0.84640 1.23127 0.83823 0.80875 0.81733 1.90654 1.48221 1.59592 1.40230 1.86481 1.53507 1.54317 1.32594 1.23527 0.86967 0.88889 1.01012 1.21624 1.01430 0.99858 0.91066 1.19177 0.92292 0.92842 0.98281 1.22008 1.21118 1.27062 0.93911 0.93009 1.25898 0.92776 0.94342 1.05913 1.70756 1.37696 1.43262 1.03092 0.83485 0.76490 0.75938 0.73971 1.21390 1.20939 1.21397 1.22393 1.04265 0.93384 0.98659 1.20736 0.79921 0.84606 0.84179 1.90708 1.39116 1.26428 1.83722 0.93175 0.92968 0.92670 0.90570 0.92534 0.91117 0.90392 0.91458 0.92517 0.90946 0.88392 0.89585 0.91562 0.91457 0.91906 0.91918 0.97165 0.97171 0.92062 0.86175 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.13 -1.45 5.82 -26.73 -0.16 -1.60 16 3 C -0.14 -1.40 4.64 -26.73 -0.12 -1.52 16 4 C 0.16 1.38 2.86 -67.93 -0.19 1.19 16 5 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 6 C -0.17 -1.33 9.20 37.16 0.34 -0.99 16 7 N -0.61 -5.77 2.28 -164.84 -0.38 -6.15 16 8 C 0.11 0.83 6.63 -3.12 -0.02 0.81 16 9 C -0.10 -0.81 3.66 -90.14 -0.33 -1.14 16 10 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 11 C 0.46 6.02 7.20 36.01 0.26 6.28 16 12 O -0.50 -7.62 13.57 -18.75 -0.25 -7.87 16 13 O -0.35 -5.35 10.20 -39.26 -0.40 -5.75 16 14 C 0.07 1.21 5.47 37.16 0.20 1.42 16 15 C -0.10 -2.08 5.53 -26.73 -0.15 -2.23 16 16 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 17 C -0.60 -17.11 9.11 -34.44 -0.31 -17.43 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 20 N -0.91 -28.01 13.65 55.43 0.76 -27.25 16 21 Si 1.07 25.26 29.90 -169.99 -5.08 20.17 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.15 -1.30 6.40 -26.75 -0.17 -1.47 16 26 C 0.52 6.02 7.39 -10.86 -0.08 5.94 16 27 O -0.52 -7.92 15.07 5.56 0.08 -7.83 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.06 5.96 -51.93 -0.31 0.75 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.01 6.65 -51.93 -0.35 0.66 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 38 H 0.10 0.81 7.02 -51.93 -0.36 0.44 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 41 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 45 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 16 46 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 47 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.11 1.16 7.89 -51.92 -0.41 0.75 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -33.91 386.87 -8.47 -42.39 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.45 Total: -1.92 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.58 Total: -11.61 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.38 Total: -33.40 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.57 Total: -21.46 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.91 -8.47 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585160.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.863 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds