Wall clock time and date at job start Fri Apr 10 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47454 * 2 1 4 4 C 1.53001 * 109.47454 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46690 * 304.99745 * 4 3 2 6 6 C 1.53005 * 109.46980 * 185.00149 * 4 3 2 7 7 N 1.46499 * 109.47011 * 64.99811 * 4 3 2 8 8 C 1.46756 * 124.34744 * 239.99902 * 7 4 3 9 9 C 1.54485 * 105.47002 * 163.01052 * 8 7 4 10 10 H 1.09002 * 110.96930 * 143.57380 * 9 8 7 11 11 C 1.50703 * 110.96621 * 267.29250 * 9 8 7 12 12 O 1.20829 * 120.00166 * 0.02562 * 11 9 8 13 13 O 1.34232 * 119.99932 * 179.97438 * 11 9 8 14 14 C 1.45196 * 116.99674 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47008 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47348 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46919 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 89.99934 * 21 19 17 23 23 H 1.48499 * 109.47026 * 209.99782 * 21 19 17 24 24 H 1.48496 * 109.47474 * 329.99818 * 21 19 17 25 25 C 1.54624 * 101.76527 * 25.41295 * 9 8 7 26 26 C 1.34423 * 124.34630 * 60.02852 * 7 4 3 27 27 O 1.21274 * 124.94465 * 0.37915 * 26 7 4 28 28 H 1.09007 * 109.47098 * 299.99907 * 1 2 3 29 29 H 1.08997 * 109.46790 * 59.99742 * 1 2 3 30 30 H 1.09001 * 109.46715 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47316 * 239.99995 * 2 1 3 32 32 H 1.09007 * 109.47420 * 119.99929 * 2 1 3 33 33 H 1.09007 * 109.46893 * 59.99967 * 3 2 1 34 34 H 1.09001 * 109.47063 * 300.00612 * 3 2 1 35 35 H 1.08997 * 109.47291 * 59.99828 * 6 4 3 36 36 H 1.08995 * 109.46689 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.46699 * 299.99706 * 6 4 3 38 38 H 1.08998 * 110.25094 * 44.00946 * 8 7 4 39 39 H 1.09004 * 110.24949 * 282.00448 * 8 7 4 40 40 H 1.09001 * 109.47508 * 60.00739 * 14 13 11 41 41 H 1.09000 * 109.47330 * 300.00023 * 14 13 11 42 42 H 1.09004 * 109.47107 * 59.99919 * 15 14 13 43 43 H 1.09000 * 109.46866 * 300.00028 * 15 14 13 44 44 H 1.09000 * 109.46497 * 60.00162 * 16 15 14 45 45 H 1.08999 * 109.46623 * 300.00226 * 16 15 14 46 46 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 47 47 H 1.09000 * 110.48297 * 93.88519 * 25 9 8 48 48 H 1.09008 * 110.48523 * 216.52467 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0801 2.8795 0.1251 7 7 4.0579 0.8589 -1.2527 8 6 4.9050 -0.3367 -1.3343 9 6 4.8002 -0.8169 -2.7988 10 1 5.7531 -1.2144 -3.1482 11 6 3.7034 -1.8387 -2.9541 12 8 3.0476 -2.1715 -1.9954 13 8 3.4543 -2.3783 -4.1577 14 6 2.3830 -3.3555 -4.2330 15 6 2.2490 -3.8554 -5.6728 16 6 1.1205 -4.8855 -5.7521 17 6 0.9881 -5.3774 -7.1704 18 1 1.6431 -4.9934 -7.9385 19 6 0.0302 -6.3170 -7.4876 20 7 -0.7716 -6.7798 -6.5535 21 14 -0.1344 -6.9262 -9.2458 22 1 0.7377 -8.1120 -9.4424 23 1 -1.5468 -7.3012 -9.5096 24 1 0.2752 -5.8497 -10.1831 25 6 4.4431 0.4946 -3.5359 26 6 3.7874 1.3501 -2.4744 27 8 3.1154 2.3355 -2.6937 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.7172 3.3137 1.0567 36 1 5.1701 2.8795 0.1242 37 1 3.7164 3.4690 -0.7165 38 1 4.5362 -1.1073 -0.6573 39 1 5.9377 -0.0845 -1.0931 40 1 1.4468 -2.8931 -3.9200 41 1 2.6106 -4.1955 -3.5768 42 1 3.1852 -4.3178 -5.9855 43 1 2.0215 -3.0155 -6.3293 44 1 0.1842 -4.4234 -5.4393 45 1 1.3484 -5.7253 -5.0956 46 1 -0.6864 -6.4633 -5.6406 47 1 5.3445 0.9781 -3.9124 48 1 3.7464 0.2969 -4.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919585160.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:33 Heat of formation + Delta-G solvation = -174.178506 kcal Electronic energy + Delta-G solvation = -26662.449928 eV Core-core repulsion = 22908.435871 eV Total energy + Delta-G solvation = -3754.014056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.29242 -40.97551 -38.15040 -37.57378 -36.76653 -36.29783 -33.96758 -33.60401 -31.14588 -28.93323 -28.58336 -27.66700 -25.73947 -24.44528 -23.52723 -22.49656 -22.38615 -21.46201 -20.00830 -19.15639 -18.77383 -17.93178 -17.84907 -17.62978 -16.73100 -16.19661 -15.80794 -15.77093 -15.66045 -15.29072 -14.98099 -14.85988 -14.65122 -14.45367 -14.25351 -13.91689 -13.68046 -13.59191 -13.54993 -13.12446 -12.91260 -12.80765 -12.79624 -12.69425 -12.55419 -12.43139 -12.17592 -12.09254 -11.96682 -11.90330 -11.69951 -11.66650 -11.52122 -11.40048 -10.76116 -10.68215 -10.57814 -9.70961 -8.72681 -6.43957 1.05259 1.44995 1.52746 1.57478 1.62193 1.79974 1.99852 2.55810 3.12859 3.15976 3.25406 3.49493 3.67605 3.78091 3.86970 3.92556 3.98730 4.03448 4.24893 4.26685 4.29497 4.36398 4.51501 4.55760 4.59121 4.61154 4.64120 4.66885 4.74908 4.77211 4.81568 4.85973 4.86456 4.92782 4.93405 5.14650 5.22356 5.25394 5.27586 5.35536 5.37841 5.47728 5.67417 5.93048 6.12201 6.14338 6.51764 6.62089 7.12212 7.38382 8.68486 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.002643 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.778172 B =10591.998436 C =11170.684756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.153 3.847 5 H 0.114 0.886 6 C -0.158 4.158 7 N -0.608 5.608 8 C 0.112 3.888 9 C -0.086 4.086 10 H 0.181 0.819 11 C 0.455 3.545 12 O -0.524 6.524 13 O -0.354 6.354 14 C 0.081 3.919 15 C -0.088 4.088 16 C 0.010 3.990 17 C -0.619 4.619 18 H 0.057 0.943 19 C -0.040 4.040 20 N -0.939 5.939 21 Si 1.122 2.878 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.267 1.267 25 C -0.142 4.142 26 C 0.504 3.496 27 O -0.571 6.571 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.063 0.937 44 H -0.010 1.010 45 H -0.005 1.005 46 H 0.255 0.745 47 H 0.158 0.842 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.178 17.357 15.178 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.169 4.169 4 C 0.051 3.949 5 H 0.132 0.868 6 C -0.216 4.216 7 N -0.342 5.342 8 C -0.010 4.010 9 C -0.105 4.105 10 H 0.199 0.801 11 C 0.299 3.701 12 O -0.413 6.413 13 O -0.270 6.270 14 C 0.008 3.992 15 C -0.126 4.126 16 C -0.027 4.027 17 C -0.656 4.656 18 H 0.075 0.925 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.943 3.057 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.182 4.182 26 C 0.293 3.707 27 O -0.451 6.451 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.008 0.992 45 H 0.014 0.986 46 H 0.065 0.935 47 H 0.175 0.825 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.734 16.761 14.467 27.162 hybrid contribution -0.051 0.684 1.137 1.328 sum 15.683 17.445 15.604 28.174 Atomic orbital electron populations 1.21735 0.96348 1.01168 1.01494 1.21505 0.95650 0.96717 1.02123 1.21993 0.95557 0.96845 1.02528 1.21168 0.93172 0.95342 0.85206 0.86840 1.22097 1.01841 0.95077 1.02615 1.48490 1.50626 1.28965 1.06080 1.22371 0.97386 0.86848 0.94356 1.22197 0.98266 0.91625 0.98410 0.80136 1.24248 0.84441 0.81010 0.80444 1.90656 1.49336 1.60544 1.40782 1.86469 1.52390 1.53888 1.34284 1.23040 0.87605 0.89585 0.98991 1.21322 0.99699 0.98524 0.93022 1.19103 0.93316 0.93585 0.96720 1.22462 1.20969 1.26921 0.95296 0.92511 1.27525 0.92276 0.94534 1.09423 1.70893 1.39177 1.44570 1.02948 0.82879 0.76782 0.76673 0.69405 1.19476 1.20968 1.19177 1.22430 1.05138 0.93294 0.97299 1.21277 0.79564 0.84391 0.85512 1.90682 1.41239 1.28640 1.84546 0.91195 0.94540 0.93520 0.93260 0.91186 0.89325 0.93683 0.89856 0.91106 0.93918 0.89134 0.85002 0.92782 0.91478 0.91059 0.91858 0.99201 0.98630 0.93532 0.82480 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.12 -2.80 5.82 30.59 0.18 -2.62 16 3 C -0.13 -2.64 4.64 30.59 0.14 -2.50 16 4 C 0.15 2.39 2.86 44.99 0.13 2.52 16 5 H 0.11 1.23 8.07 -2.39 -0.02 1.21 16 6 C -0.16 -2.26 9.20 71.98 0.66 -1.60 16 7 N -0.61 -10.42 2.28 -794.04 -1.81 -12.23 16 8 C 0.11 1.25 6.63 86.84 0.58 1.83 16 9 C -0.09 -1.14 3.66 -10.48 -0.04 -1.18 16 10 H 0.18 0.84 8.14 -2.39 -0.02 0.82 16 11 C 0.45 11.28 7.20 71.24 0.51 11.79 16 12 O -0.52 -15.88 13.57 21.95 0.30 -15.58 16 13 O -0.35 -10.43 10.20 -51.44 -0.52 -10.95 16 14 C 0.08 2.90 5.47 71.98 0.39 3.30 16 15 C -0.09 -3.61 5.53 30.60 0.17 -3.44 16 16 C 0.01 0.52 4.28 29.85 0.13 0.64 16 17 C -0.62 -35.40 9.11 25.60 0.23 -35.16 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 19 C -0.04 -2.36 5.46 84.66 0.46 -1.89 16 20 N -0.94 -58.85 13.65 21.45 0.29 -58.56 16 21 Si 1.12 50.20 29.90 68.60 2.05 52.25 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 C -0.14 -2.20 6.40 30.58 0.20 -2.01 16 26 C 0.50 11.39 7.39 87.90 0.65 12.04 16 27 O -0.57 -17.91 15.07 -3.01 -0.05 -17.95 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.40 5.96 -2.39 -0.01 1.39 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.04 1.22 6.65 -2.39 -0.02 1.21 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.04 0.88 6.77 -2.39 -0.02 0.87 16 38 H 0.09 1.23 7.02 -2.39 -0.02 1.22 16 39 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.05 2.04 8.13 -2.39 -0.02 2.02 16 41 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 42 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 43 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 44 H -0.01 -0.57 8.00 -2.39 -0.02 -0.59 16 45 H 0.00 -0.25 8.01 -2.39 -0.02 -0.27 16 46 H 0.26 16.20 7.22 -92.71 -0.67 15.53 16 47 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.10 1.89 7.89 -2.38 -0.02 1.87 16 Total: -1.00 -77.73 386.87 6.38 -71.35 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.02 Total: 12.77 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 5.11 Total: -21.10 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.52 Total: -70.79 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.27 Total: -44.49 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -77.73 6.38 -71.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919585160.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.827 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds