Wall clock time and date at job start Fri Apr 10 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47243 * 2 1 4 4 C 1.50697 * 109.46920 * 120.00453 * 2 1 3 5 5 O 1.21281 * 120.00081 * 334.12475 * 4 2 1 6 6 N 1.34780 * 120.00269 * 153.85056 * 4 2 1 7 7 C 1.46921 * 120.62417 * 6.46388 * 6 4 2 8 8 C 1.53194 * 108.77282 * 233.58188 * 7 6 4 9 9 C 1.53039 * 109.31596 * 305.36987 * 8 7 6 10 10 C 1.53036 * 109.53770 * 61.36321 * 9 8 7 11 11 C 1.46917 * 120.63133 * 186.18232 * 6 4 2 12 12 H 1.08993 * 109.58867 * 246.20178 * 11 6 4 13 13 C 1.50702 * 109.58760 * 6.63037 * 11 6 4 14 14 O 1.20817 * 120.00332 * 61.12792 * 13 11 6 15 15 O 1.34231 * 119.99670 * 241.12489 * 13 11 6 16 16 C 1.45202 * 116.99826 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.47033 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47140 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47311 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99690 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00207 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99795 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47293 * 59.99800 * 23 21 19 25 25 H 1.48494 * 109.47154 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46929 * 300.00094 * 23 21 19 27 27 H 1.08997 * 109.47566 * 299.99840 * 1 2 3 28 28 H 1.09002 * 109.46775 * 59.99767 * 1 2 3 29 29 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46753 * 240.00123 * 2 1 3 31 31 H 1.09001 * 109.47062 * 174.83274 * 3 2 1 32 32 H 1.09000 * 109.47132 * 294.83745 * 3 2 1 33 33 H 1.09005 * 109.46762 * 54.83296 * 3 2 1 34 34 H 1.08997 * 109.59369 * 353.37039 * 7 6 4 35 35 H 1.09003 * 109.58778 * 113.80275 * 7 6 4 36 36 H 1.09004 * 109.49445 * 65.32057 * 8 7 6 37 37 H 1.09005 * 109.49768 * 185.41331 * 8 7 6 38 38 H 1.08997 * 109.46067 * 181.38665 * 9 8 7 39 39 H 1.09000 * 109.45750 * 301.34563 * 9 8 7 40 40 H 1.08997 * 109.49850 * 58.58896 * 10 9 8 41 41 H 1.09000 * 109.50051 * 178.65091 * 10 9 8 42 42 H 1.08998 * 109.46917 * 299.99545 * 16 15 13 43 43 H 1.08996 * 109.47497 * 60.00273 * 16 15 13 44 44 H 1.09001 * 109.47224 * 300.00202 * 17 16 15 45 45 H 1.09004 * 109.47023 * 59.99953 * 17 16 15 46 46 H 1.09004 * 109.47224 * 299.99650 * 18 17 16 47 47 H 1.08992 * 109.47336 * 59.99690 * 18 17 16 48 48 H 0.97000 * 119.99640 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3434 -0.7570 2.2275 6 7 3.2447 -1.2991 1.2210 7 6 4.1462 -1.1377 0.0721 8 6 4.5719 -2.5248 -0.4192 9 6 5.1743 -3.3120 0.7467 10 6 4.1210 -3.4900 1.8426 11 6 3.6925 -2.1091 2.3620 12 1 4.5367 -1.6205 2.8482 13 6 2.5611 -2.2659 3.3452 14 8 1.5380 -2.8121 3.0068 15 8 2.6903 -1.7987 4.5969 16 6 1.5602 -1.9841 5.4896 17 6 1.8908 -1.3913 6.8608 18 6 0.7002 -1.5873 7.8016 19 6 1.0256 -1.0028 9.1520 20 1 1.9857 -0.5386 9.3223 21 6 0.0980 -1.0619 10.1704 22 7 -1.0709 -1.6277 9.9631 23 14 0.5016 -0.3381 11.8445 24 1 0.7853 1.1125 11.7013 25 1 -0.6540 -0.5282 12.7575 26 1 1.6941 -1.0228 12.4053 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1261 1.4438 0.0926 32 1 1.7542 1.9289 -0.9326 33 1 1.6031 1.9823 0.8401 34 1 3.6275 -0.6099 -0.7281 35 1 5.0268 -0.5714 0.3754 36 1 3.7024 -3.0562 -0.8063 37 1 5.3154 -2.4186 -1.2093 38 1 5.5005 -4.2905 0.3942 39 1 6.0287 -2.7678 1.1493 40 1 3.2558 -4.0123 1.4342 41 1 4.5433 -4.0713 2.6622 42 1 0.6855 -1.4806 5.0778 43 1 1.3508 -3.0486 5.5945 44 1 2.7656 -1.8944 7.2728 45 1 2.0999 -0.3267 6.7556 46 1 -0.1749 -1.0844 7.3898 47 1 0.4916 -2.6518 7.9067 48 1 -1.7236 -1.6689 10.6795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919600369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:36 Heat of formation + Delta-G solvation = -141.576908 kcal Electronic energy + Delta-G solvation = -27015.386493 eV Core-core repulsion = 23262.786148 eV Total energy + Delta-G solvation = -3752.600345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25857 -39.29136 -37.80943 -36.10974 -34.74624 -33.85584 -33.11744 -31.91054 -31.41370 -27.43712 -27.26238 -26.28631 -24.39692 -23.79416 -22.84902 -20.97676 -20.64509 -20.19057 -18.90911 -17.90401 -17.03429 -16.47303 -16.27822 -15.72412 -15.63927 -15.45351 -14.81342 -14.52026 -14.41231 -14.29708 -14.18277 -13.79195 -13.51746 -13.14754 -12.84592 -12.67003 -12.51894 -12.20820 -12.12987 -11.89864 -11.80220 -11.64651 -11.57971 -11.40655 -11.34689 -11.22282 -11.03598 -10.87694 -10.60226 -10.48129 -10.16910 -9.99880 -9.61847 -9.54152 -9.37694 -9.08567 -8.95939 -8.31470 -5.96331 -3.99115 2.22140 2.46903 2.97861 3.08925 3.36864 3.40639 3.43595 4.18053 4.28210 4.41177 4.48076 4.50610 4.57148 4.60775 4.73357 4.82283 4.90003 5.02866 5.12044 5.16082 5.30993 5.35005 5.39171 5.39989 5.42021 5.46204 5.60780 5.61093 5.64708 5.66112 5.78971 5.88271 5.90143 5.92304 6.05193 6.14447 6.23094 6.70072 6.71271 7.03364 7.07039 7.18456 7.69606 7.82468 7.96824 8.02761 8.29808 8.44934 9.07050 9.64411 11.15212 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.002855 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.922802 B = 9804.644446 C =10624.438697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.144 4.144 4 C 0.511 3.489 5 O -0.498 6.498 6 N -0.609 5.609 7 C 0.108 3.892 8 C -0.139 4.139 9 C -0.117 4.117 10 C -0.124 4.124 11 C 0.153 3.847 12 H 0.101 0.899 13 C 0.475 3.525 14 O -0.499 6.499 15 O -0.360 6.360 16 C 0.077 3.923 17 C -0.108 4.108 18 C 0.025 3.975 19 C -0.520 4.520 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.747 0.811 -27.857 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C -0.201 4.201 4 C 0.299 3.701 5 O -0.372 6.372 6 N -0.346 5.346 7 C -0.014 4.014 8 C -0.177 4.177 9 C -0.154 4.154 10 C -0.163 4.163 11 C 0.049 3.951 12 H 0.119 0.881 13 C 0.317 3.683 14 O -0.387 6.387 15 O -0.276 6.276 16 C 0.004 3.996 17 C -0.145 4.145 18 C -0.012 4.012 19 C -0.559 4.559 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.837 0.589 -27.264 30.140 hybrid contribution 0.070 0.263 0.916 0.955 sum 12.907 0.852 -26.348 29.352 Atomic orbital electron populations 1.21668 0.92138 1.02914 1.02666 1.21276 0.98571 0.97283 0.95763 1.21792 1.01196 0.93861 1.03277 1.20913 0.80211 0.78566 0.90431 1.90805 1.55104 1.57527 1.33740 1.48077 1.17117 1.50922 1.18532 1.21867 0.93868 0.97726 0.87919 1.21979 1.01594 0.95834 0.98320 1.21501 0.97720 1.01033 0.95166 1.21960 1.00330 0.94331 0.99642 1.20788 0.94904 0.93888 0.85527 0.88129 1.22466 0.87522 0.75864 0.82454 1.90621 1.28938 1.41168 1.77934 1.86396 1.45748 1.73472 1.22021 1.23363 0.86297 1.01073 0.88887 1.21742 1.01718 1.00175 0.90886 1.19035 0.91849 0.97484 0.92877 1.21156 1.00986 1.37827 0.95904 0.92523 1.25033 0.95035 0.95447 0.98990 1.69966 1.06199 1.44188 1.33067 0.86608 0.77747 0.79666 0.83684 1.20205 1.21282 1.20203 0.91182 0.91885 0.92182 0.89055 0.92200 0.91222 0.91509 0.88915 0.90750 0.91115 0.90241 0.90827 0.91207 0.90087 0.89847 0.91424 0.92074 0.92409 0.92351 0.96243 0.96302 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.74 37.16 0.32 -1.06 16 2 C -0.11 -0.99 2.39 -91.77 -0.22 -1.21 16 3 C -0.14 -1.05 8.95 37.16 0.33 -0.72 16 4 C 0.51 6.85 6.49 -10.99 -0.07 6.78 16 5 O -0.50 -9.36 11.86 -21.04 -0.25 -9.61 16 6 N -0.61 -6.59 2.97 -166.28 -0.49 -7.09 16 7 C 0.11 0.65 5.86 -3.71 -0.02 0.63 16 8 C -0.14 -0.70 6.08 -26.61 -0.16 -0.87 16 9 C -0.12 -0.69 5.88 -26.69 -0.16 -0.85 16 10 C -0.12 -1.18 5.33 -26.39 -0.14 -1.32 16 11 C 0.15 1.89 3.36 -68.53 -0.23 1.66 16 12 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 13 C 0.47 8.49 4.53 36.01 0.16 8.66 16 14 O -0.50 -10.40 14.34 -26.92 -0.39 -10.79 16 15 O -0.36 -7.09 10.22 -41.15 -0.42 -7.51 16 16 C 0.08 1.65 5.47 37.16 0.20 1.86 16 17 C -0.11 -2.47 5.53 -26.73 -0.15 -2.62 16 18 C 0.02 0.68 4.97 -27.88 -0.14 0.54 16 19 C -0.52 -15.35 9.11 -34.44 -0.31 -15.67 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 23 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.60 6.49 -51.93 -0.34 0.26 16 31 H 0.06 0.37 7.45 -51.93 -0.39 -0.01 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.40 5.14 -51.93 -0.27 0.14 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.55 8.13 -51.93 -0.42 1.13 16 43 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -36.78 381.02 -9.31 -46.09 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -8.54 Total: -4.37 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.68 Total: -2.62 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.24 Total: -34.16 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.06 Total: -27.90 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.78 -9.31 -46.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919600369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.484 kcal (2) G-P(sol) polarization free energy of solvation -36.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds