Wall clock time and date at job start Fri Apr 10 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47243 * 2 1 4 4 C 1.50697 * 109.46920 * 120.00453 * 2 1 3 5 5 O 1.21281 * 120.00081 * 334.12475 * 4 2 1 6 6 N 1.34780 * 120.00269 * 153.85056 * 4 2 1 7 7 C 1.46921 * 120.62417 * 6.46388 * 6 4 2 8 8 C 1.53194 * 108.77282 * 233.58188 * 7 6 4 9 9 C 1.53039 * 109.31596 * 305.36987 * 8 7 6 10 10 C 1.53036 * 109.53770 * 61.36321 * 9 8 7 11 11 C 1.46917 * 120.63133 * 186.18232 * 6 4 2 12 12 H 1.08993 * 109.58867 * 246.20178 * 11 6 4 13 13 C 1.50702 * 109.58760 * 6.63037 * 11 6 4 14 14 O 1.20817 * 120.00332 * 61.12792 * 13 11 6 15 15 O 1.34231 * 119.99670 * 241.12489 * 13 11 6 16 16 C 1.45202 * 116.99826 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.47033 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47140 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47311 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99690 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00207 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99795 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47293 * 59.99800 * 23 21 19 25 25 H 1.48494 * 109.47154 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46929 * 300.00094 * 23 21 19 27 27 H 1.08997 * 109.47566 * 299.99840 * 1 2 3 28 28 H 1.09002 * 109.46775 * 59.99767 * 1 2 3 29 29 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46753 * 240.00123 * 2 1 3 31 31 H 1.09001 * 109.47062 * 174.83274 * 3 2 1 32 32 H 1.09000 * 109.47132 * 294.83745 * 3 2 1 33 33 H 1.09005 * 109.46762 * 54.83296 * 3 2 1 34 34 H 1.08997 * 109.59369 * 353.37039 * 7 6 4 35 35 H 1.09003 * 109.58778 * 113.80275 * 7 6 4 36 36 H 1.09004 * 109.49445 * 65.32057 * 8 7 6 37 37 H 1.09005 * 109.49768 * 185.41331 * 8 7 6 38 38 H 1.08997 * 109.46067 * 181.38665 * 9 8 7 39 39 H 1.09000 * 109.45750 * 301.34563 * 9 8 7 40 40 H 1.08997 * 109.49850 * 58.58896 * 10 9 8 41 41 H 1.09000 * 109.50051 * 178.65091 * 10 9 8 42 42 H 1.08998 * 109.46917 * 299.99545 * 16 15 13 43 43 H 1.08996 * 109.47497 * 60.00273 * 16 15 13 44 44 H 1.09001 * 109.47224 * 300.00202 * 17 16 15 45 45 H 1.09004 * 109.47023 * 59.99953 * 17 16 15 46 46 H 1.09004 * 109.47224 * 299.99650 * 18 17 16 47 47 H 1.08992 * 109.47336 * 59.99690 * 18 17 16 48 48 H 0.97000 * 119.99640 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3434 -0.7570 2.2275 6 7 3.2447 -1.2991 1.2210 7 6 4.1462 -1.1377 0.0721 8 6 4.5719 -2.5248 -0.4192 9 6 5.1743 -3.3120 0.7467 10 6 4.1210 -3.4900 1.8426 11 6 3.6925 -2.1091 2.3620 12 1 4.5367 -1.6205 2.8482 13 6 2.5611 -2.2659 3.3452 14 8 1.5380 -2.8121 3.0068 15 8 2.6903 -1.7987 4.5969 16 6 1.5602 -1.9841 5.4896 17 6 1.8908 -1.3913 6.8608 18 6 0.7002 -1.5873 7.8016 19 6 1.0256 -1.0028 9.1520 20 1 1.9857 -0.5386 9.3223 21 6 0.0980 -1.0619 10.1704 22 7 -1.0709 -1.6277 9.9631 23 14 0.5016 -0.3381 11.8445 24 1 0.7853 1.1125 11.7013 25 1 -0.6540 -0.5282 12.7575 26 1 1.6941 -1.0228 12.4053 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1261 1.4438 0.0926 32 1 1.7542 1.9289 -0.9326 33 1 1.6031 1.9823 0.8401 34 1 3.6275 -0.6099 -0.7281 35 1 5.0268 -0.5714 0.3754 36 1 3.7024 -3.0562 -0.8063 37 1 5.3154 -2.4186 -1.2093 38 1 5.5005 -4.2905 0.3942 39 1 6.0287 -2.7678 1.1493 40 1 3.2558 -4.0123 1.4342 41 1 4.5433 -4.0713 2.6622 42 1 0.6855 -1.4806 5.0778 43 1 1.3508 -3.0486 5.5945 44 1 2.7656 -1.8944 7.2728 45 1 2.0999 -0.3267 6.7556 46 1 -0.1749 -1.0844 7.3898 47 1 0.4916 -2.6518 7.9067 48 1 -1.7236 -1.6689 10.6795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919600369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:36 Heat of formation + Delta-G solvation = -163.613335 kcal Electronic energy + Delta-G solvation = -27016.342064 eV Core-core repulsion = 23262.786148 eV Total energy + Delta-G solvation = -3753.555916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34634 -40.62504 -38.66438 -37.66241 -35.96634 -35.63482 -33.85038 -33.73820 -32.48500 -29.15843 -28.13800 -27.31364 -25.60066 -24.79278 -24.25942 -22.22558 -22.05011 -21.45236 -19.79637 -19.07318 -18.63881 -18.13841 -17.69976 -17.05253 -16.81307 -16.50323 -16.42222 -15.65640 -15.45106 -15.22428 -15.00171 -14.83494 -14.60689 -14.22100 -14.19980 -13.87699 -13.76508 -13.71116 -13.39592 -13.09779 -12.97330 -12.78184 -12.63470 -12.55022 -12.40676 -12.23013 -12.14816 -12.05413 -12.00717 -11.77936 -11.71916 -11.61587 -11.44239 -11.37746 -11.13440 -10.63469 -10.60549 -9.81607 -8.24359 -6.37432 1.08770 1.38606 1.43487 1.47320 1.51443 1.65416 1.98658 2.39346 3.08682 3.35060 3.59737 3.67896 3.77475 3.86176 3.92735 3.98317 4.00310 4.05803 4.07650 4.16321 4.29745 4.33854 4.51180 4.64039 4.70262 4.72224 4.74799 4.79500 4.80177 4.84193 4.84994 4.97215 5.00976 5.02232 5.09405 5.18502 5.24271 5.28552 5.36511 5.40579 5.43669 5.56316 5.58639 5.74769 6.14410 6.21170 6.76483 6.80281 7.07033 7.32103 8.88219 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.002855 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.922802 B = 9804.644446 C =10624.438697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.138 4.138 4 C 0.495 3.505 5 O -0.566 6.566 6 N -0.604 5.604 7 C 0.099 3.901 8 C -0.135 4.135 9 C -0.111 4.111 10 C -0.120 4.120 11 C 0.155 3.845 12 H 0.122 0.878 13 C 0.466 3.534 14 O -0.536 6.536 15 O -0.363 6.363 16 C 0.091 3.909 17 C -0.090 4.090 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.067 0.933 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.975 3.025 24 H -0.265 1.265 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.036 0.964 28 H 0.096 0.904 29 H 0.038 0.962 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.061 0.939 46 H -0.011 1.011 47 H -0.003 1.003 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.216 1.853 -29.784 34.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 C -0.196 4.196 4 C 0.285 3.715 5 O -0.445 6.445 6 N -0.341 5.341 7 C -0.021 4.021 8 C -0.173 4.173 9 C -0.148 4.148 10 C -0.158 4.158 11 C 0.050 3.950 12 H 0.139 0.861 13 C 0.311 3.689 14 O -0.425 6.425 15 O -0.280 6.280 16 C 0.017 3.983 17 C -0.127 4.127 18 C -0.009 4.009 19 C -0.584 4.584 20 H 0.085 0.915 21 C -0.201 4.201 22 N -0.575 5.575 23 Si 0.798 3.202 24 H -0.190 1.190 25 H -0.207 1.207 26 H -0.187 1.187 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.008 0.992 47 H 0.015 0.985 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.374 1.627 -29.252 33.562 hybrid contribution -1.027 -0.105 1.419 1.755 sum 15.347 1.522 -27.833 31.820 Atomic orbital electron populations 1.21665 0.93492 1.01544 1.02629 1.21368 0.97427 0.98463 0.94848 1.21798 1.02024 0.92101 1.03670 1.21835 0.80425 0.78286 0.90919 1.90775 1.57074 1.60348 1.36301 1.48332 1.17094 1.49405 1.19227 1.22342 0.93966 0.99136 0.86658 1.22000 1.02022 0.94659 0.98652 1.21535 0.96768 1.02455 0.94090 1.22002 1.00648 0.92141 1.01047 1.21006 0.92658 0.96310 0.85006 0.86074 1.23717 0.88755 0.74364 0.82063 1.90590 1.30953 1.42875 1.78112 1.86384 1.44418 1.74058 1.23153 1.22908 0.86361 1.00231 0.88812 1.21444 1.00058 1.00560 0.90665 1.18909 0.92626 0.95541 0.93813 1.21577 1.01702 1.38347 0.96764 0.91487 1.26098 0.94625 0.95570 1.03798 1.70118 1.07412 1.45271 1.34714 0.85358 0.77983 0.79159 0.77686 1.18997 1.20701 1.18706 0.94452 0.88546 0.94252 0.85390 0.90488 0.88283 0.94212 0.86689 0.88364 0.92257 0.86847 0.89391 0.89412 0.92486 0.89537 0.93930 0.92461 0.90961 0.92062 0.99227 0.98509 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.74 71.98 0.63 -2.20 16 2 C -0.10 -1.70 2.39 -11.54 -0.03 -1.73 16 3 C -0.14 -1.71 8.95 71.98 0.64 -1.07 16 4 C 0.50 13.41 6.49 87.66 0.57 13.98 16 5 O -0.57 -22.82 11.86 22.40 0.27 -22.55 16 6 N -0.60 -12.23 2.97 -798.39 -2.37 -14.60 16 7 C 0.10 0.78 5.86 86.36 0.51 1.29 16 8 C -0.14 -0.80 6.08 30.67 0.19 -0.62 16 9 C -0.11 -0.93 5.88 30.62 0.18 -0.75 16 10 C -0.12 -2.13 5.33 30.82 0.16 -1.97 16 11 C 0.15 3.71 3.36 44.38 0.15 3.85 16 12 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 13 C 0.47 17.47 4.53 71.24 0.32 17.80 16 14 O -0.54 -23.98 14.34 29.81 0.43 -23.55 16 15 O -0.36 -14.94 10.22 -49.62 -0.51 -15.44 16 16 C 0.09 4.17 5.47 71.98 0.39 4.56 16 17 C -0.09 -4.28 5.53 30.59 0.17 -4.11 16 18 C 0.03 1.64 4.97 29.85 0.15 1.79 16 19 C -0.55 -32.83 9.11 25.60 0.23 -32.60 16 20 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 21 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 22 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 23 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 27 H 0.04 1.00 7.87 -2.39 -0.02 0.98 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.13 1.22 6.49 -2.38 -0.02 1.20 16 31 H 0.08 0.70 7.45 -2.39 -0.02 0.68 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.71 8.14 -2.38 -0.02 0.70 16 34 H 0.12 0.42 5.14 -2.39 -0.01 0.41 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.06 1.29 7.95 -2.39 -0.02 1.27 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 43 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 44 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.06 2.86 8.14 -2.38 -0.02 2.84 16 46 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -86.87 381.02 5.77 -81.10 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.91 Total: 8.17 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 4.73 Total: -1.49 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.08 Total: -73.98 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: 0.19 Total: -61.55 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -86.87 5.77 -81.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919600369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.512 kcal (2) G-P(sol) polarization free energy of solvation -86.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds