Wall clock time and date at job start Fri Apr 10 2020 22:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.62879 * 359.72485 * 6 4 3 8 8 C 1.53620 * 108.54214 * 126.36914 * 7 6 4 9 9 C 1.53040 * 109.24368 * 54.85383 * 8 7 6 10 10 C 1.53042 * 109.53871 * 298.50818 * 9 8 7 11 11 H 1.08998 * 109.49720 * 301.41466 * 10 9 8 12 12 C 1.50694 * 109.49673 * 181.31667 * 10 9 8 13 13 O 1.20826 * 119.99863 * 240.16188 * 12 10 9 14 14 O 1.34231 * 120.00482 * 60.16724 * 12 10 9 15 15 C 1.45196 * 117.00328 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.46803 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47005 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47238 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00079 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99982 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99900 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99945 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47253 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46873 * 120.00048 * 22 20 18 25 25 H 1.48500 * 109.47245 * 239.99591 * 22 20 18 26 26 C 1.46923 * 120.62868 * 180.02562 * 6 4 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09005 * 109.58574 * 246.19891 * 7 6 4 35 35 H 1.08995 * 109.58882 * 6.62520 * 7 6 4 36 36 H 1.09002 * 109.63699 * 294.86051 * 8 7 6 37 37 H 1.09005 * 109.46138 * 174.74046 * 8 7 6 38 38 H 1.09008 * 109.46074 * 178.49092 * 9 8 7 39 39 H 1.08996 * 109.46058 * 58.53471 * 9 8 7 40 40 H 1.08994 * 109.47063 * 299.99682 * 15 14 12 41 41 H 1.09002 * 109.46984 * 60.00422 * 15 14 12 42 42 H 1.08994 * 109.47346 * 299.99869 * 16 15 14 43 43 H 1.08998 * 109.47136 * 60.00840 * 16 15 14 44 44 H 1.09002 * 109.47070 * 300.00423 * 17 16 15 45 45 H 1.09005 * 109.47097 * 60.00233 * 17 16 15 46 46 H 0.97000 * 119.99803 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.59139 * 353.37303 * 26 6 4 48 48 H 1.08997 * 109.58613 * 113.80192 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8900 -0.0069 8 6 4.0081 4.7428 1.1656 9 6 5.5295 4.8777 1.0697 10 6 6.1733 3.4927 1.1677 11 1 5.8889 3.0253 2.1104 12 6 7.6727 3.6295 1.1056 13 8 8.2924 3.0897 0.2199 14 8 8.3200 4.3510 2.0342 15 6 9.7641 4.4390 1.9122 16 6 10.3208 5.2960 3.0509 17 6 11.8425 5.3893 2.9220 18 6 12.3909 6.2330 4.0438 19 1 11.7211 6.6596 4.7758 20 6 13.7477 6.4602 4.1358 21 7 14.5633 5.9403 3.2447 22 14 14.4274 7.5065 5.5259 23 1 13.3108 7.9696 6.3885 24 1 15.3754 6.6992 6.3352 25 1 15.1366 8.6820 4.9597 26 6 5.6901 2.6257 0.0003 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.6866 4.4089 -0.9473 35 1 2.4317 3.7085 0.1072 36 1 3.7441 4.2636 2.1084 37 1 3.5516 5.7316 1.1199 38 1 5.8907 5.5045 1.8850 39 1 5.7941 5.3345 0.1161 40 1 10.1948 3.4392 1.9656 41 1 10.0208 4.8948 0.9560 42 1 9.8900 6.2958 2.9972 43 1 10.0641 4.8407 4.0073 44 1 12.2736 4.3896 2.9754 45 1 12.0989 5.8449 1.9655 46 1 15.5179 6.0998 3.3096 47 1 6.0667 1.6098 0.1192 48 1 6.0509 3.0438 -0.9394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919616100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:38 Heat of formation + Delta-G solvation = -159.043887 kcal Electronic energy + Delta-G solvation = -25524.053554 eV Core-core repulsion = 21770.695783 eV Total energy + Delta-G solvation = -3753.357770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95851 -40.03853 -37.78601 -36.44805 -34.83157 -34.04367 -33.43841 -31.83569 -31.57873 -28.66354 -27.18319 -25.63473 -24.88562 -23.12388 -22.39161 -21.67563 -20.48065 -20.12644 -19.31280 -17.70382 -17.35159 -16.59655 -16.42726 -16.24372 -16.10048 -15.78175 -14.98753 -14.68756 -14.60983 -14.47991 -14.18386 -13.73132 -13.50184 -13.41135 -13.25560 -13.00238 -12.43607 -12.24721 -12.18418 -12.09125 -12.00372 -11.75181 -11.72058 -11.40659 -11.34001 -11.14799 -11.04268 -10.99774 -10.66636 -10.62392 -10.40985 -10.31957 -10.07988 -9.74368 -9.52368 -9.16787 -9.04194 -8.40357 -6.04799 -4.07912 2.26849 2.27118 2.43040 2.99619 3.29057 3.36550 3.40719 4.04050 4.23856 4.39684 4.42284 4.42468 4.46438 4.51275 4.58280 4.78602 4.89135 4.97306 5.02711 5.05330 5.16085 5.18690 5.27907 5.31243 5.33028 5.41649 5.47322 5.56122 5.59672 5.61431 5.64816 5.74377 5.77526 5.85015 5.91229 5.99156 6.07486 6.47596 6.51958 6.82024 6.96468 7.00469 7.59011 7.69695 7.82526 7.88362 7.93588 8.34505 8.98568 9.56503 11.06642 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.035662 B = 0.001940 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.961136 B =14430.536598 C =14712.592548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.513 3.487 5 O -0.536 6.536 6 N -0.615 5.615 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.114 4.114 10 C -0.095 4.095 11 H 0.111 0.889 12 C 0.465 3.535 13 O -0.509 6.509 14 O -0.355 6.355 15 C 0.067 3.933 16 C -0.108 4.108 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.127 3.873 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.102 0.898 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.748 -4.923 -7.360 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.178 4.178 4 C 0.302 3.698 5 O -0.413 6.413 6 N -0.349 5.349 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.152 4.152 10 C -0.115 4.115 11 H 0.129 0.871 12 C 0.306 3.694 13 O -0.397 6.397 14 O -0.271 6.271 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.005 3.995 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.120 0.880 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -30.014 -5.654 -7.663 31.489 hybrid contribution 0.747 0.673 0.666 1.206 sum -29.267 -4.980 -6.997 30.501 Atomic orbital electron populations 1.21792 0.95390 1.02067 1.01746 1.21303 0.95308 0.94612 1.03701 1.21754 0.91528 1.00305 1.04260 1.20837 0.90457 0.82982 0.75523 1.90726 1.70403 1.30887 1.49264 1.48146 1.06594 1.06263 1.73888 1.21952 0.96824 0.83980 0.99304 1.22009 0.95574 1.00717 0.98827 1.21539 0.95008 0.94496 1.04116 1.21371 0.88384 0.99335 1.02406 0.87106 1.23281 0.90815 0.75718 0.79536 1.90679 1.69250 1.44704 1.35088 1.86483 1.25126 1.65175 1.50357 1.23529 0.73724 1.01701 1.01580 1.21761 0.99445 0.97990 0.95399 1.19064 0.86971 0.97643 0.97735 1.21209 0.92180 1.31387 1.11202 0.92371 1.25036 0.97155 0.96038 0.96264 1.69977 1.03444 1.44752 1.35116 0.86488 0.79007 0.80111 0.82115 1.19683 1.20969 1.20966 1.21390 0.78924 1.02023 0.97181 0.92695 0.92657 0.92342 0.91166 0.91198 0.88868 0.88796 0.90798 0.89270 0.90882 0.89730 0.89498 0.90895 0.91464 0.91478 0.92157 0.92151 0.96211 0.96214 0.92938 0.87980 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.34 16 2 C -0.11 -0.74 5.22 -26.74 -0.14 -0.88 16 3 C -0.14 -0.80 4.05 -27.89 -0.11 -0.91 16 4 C 0.51 5.03 7.70 -10.99 -0.08 4.94 16 5 O -0.54 -7.61 15.40 5.55 0.09 -7.52 16 6 N -0.61 -5.26 2.97 -172.48 -0.51 -5.77 16 7 C 0.10 0.51 6.37 -3.49 -0.02 0.49 16 8 C -0.13 -0.69 6.10 -26.39 -0.16 -0.85 16 9 C -0.11 -0.91 5.10 -26.69 -0.14 -1.05 16 10 C -0.09 -1.00 2.78 -91.63 -0.25 -1.26 16 11 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 12 C 0.46 6.90 7.26 36.00 0.26 7.16 16 13 O -0.51 -9.03 15.67 -18.75 -0.29 -9.33 16 14 O -0.36 -5.80 10.11 -39.26 -0.40 -6.19 16 15 C 0.07 1.25 5.47 37.16 0.20 1.45 16 16 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 22 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.13 1.39 5.06 -3.69 -0.02 1.37 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.09 0.37 7.93 -51.93 -0.41 -0.04 16 33 H 0.09 0.37 7.70 -51.93 -0.40 -0.03 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.24 5.93 -51.93 -0.31 -0.07 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.74 8.09 -51.92 -0.42 0.32 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 41 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.10 1.36 7.01 -51.93 -0.36 1.00 16 48 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -33.95 389.21 -8.95 -42.90 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -8.62 Total: -5.08 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.79 Total: -5.29 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.22 Total: -31.86 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.61 Total: -23.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.95 -8.95 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919616100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.145 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds