Wall clock time and date at job start Fri Apr 10 2020 22:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.62879 * 359.72485 * 6 4 3 8 8 C 1.53620 * 108.54214 * 126.36914 * 7 6 4 9 9 C 1.53040 * 109.24368 * 54.85383 * 8 7 6 10 10 C 1.53042 * 109.53871 * 298.50818 * 9 8 7 11 11 H 1.08998 * 109.49720 * 301.41466 * 10 9 8 12 12 C 1.50694 * 109.49673 * 181.31667 * 10 9 8 13 13 O 1.20826 * 119.99863 * 240.16188 * 12 10 9 14 14 O 1.34231 * 120.00482 * 60.16724 * 12 10 9 15 15 C 1.45196 * 117.00328 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.46803 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47005 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47238 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00079 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99982 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99900 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99945 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47253 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46873 * 120.00048 * 22 20 18 25 25 H 1.48500 * 109.47245 * 239.99591 * 22 20 18 26 26 C 1.46923 * 120.62868 * 180.02562 * 6 4 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09005 * 109.58574 * 246.19891 * 7 6 4 35 35 H 1.08995 * 109.58882 * 6.62520 * 7 6 4 36 36 H 1.09002 * 109.63699 * 294.86051 * 8 7 6 37 37 H 1.09005 * 109.46138 * 174.74046 * 8 7 6 38 38 H 1.09008 * 109.46074 * 178.49092 * 9 8 7 39 39 H 1.08996 * 109.46058 * 58.53471 * 9 8 7 40 40 H 1.08994 * 109.47063 * 299.99682 * 15 14 12 41 41 H 1.09002 * 109.46984 * 60.00422 * 15 14 12 42 42 H 1.08994 * 109.47346 * 299.99869 * 16 15 14 43 43 H 1.08998 * 109.47136 * 60.00840 * 16 15 14 44 44 H 1.09002 * 109.47070 * 300.00423 * 17 16 15 45 45 H 1.09005 * 109.47097 * 60.00233 * 17 16 15 46 46 H 0.97000 * 119.99803 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.59139 * 353.37303 * 26 6 4 48 48 H 1.08997 * 109.58613 * 113.80192 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8900 -0.0069 8 6 4.0081 4.7428 1.1656 9 6 5.5295 4.8777 1.0697 10 6 6.1733 3.4927 1.1677 11 1 5.8889 3.0253 2.1104 12 6 7.6727 3.6295 1.1056 13 8 8.2924 3.0897 0.2199 14 8 8.3200 4.3510 2.0342 15 6 9.7641 4.4390 1.9122 16 6 10.3208 5.2960 3.0509 17 6 11.8425 5.3893 2.9220 18 6 12.3909 6.2330 4.0438 19 1 11.7211 6.6596 4.7758 20 6 13.7477 6.4602 4.1358 21 7 14.5633 5.9403 3.2447 22 14 14.4274 7.5065 5.5259 23 1 13.3108 7.9696 6.3885 24 1 15.3754 6.6992 6.3352 25 1 15.1366 8.6820 4.9597 26 6 5.6901 2.6257 0.0003 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.6866 4.4089 -0.9473 35 1 2.4317 3.7085 0.1072 36 1 3.7441 4.2636 2.1084 37 1 3.5516 5.7316 1.1199 38 1 5.8907 5.5045 1.8850 39 1 5.7941 5.3345 0.1161 40 1 10.1948 3.4392 1.9656 41 1 10.0208 4.8948 0.9560 42 1 9.8900 6.2958 2.9972 43 1 10.0641 4.8407 4.0073 44 1 12.2736 4.3896 2.9754 45 1 12.0989 5.8449 1.9655 46 1 15.5179 6.0998 3.3096 47 1 6.0667 1.6098 0.1192 48 1 6.0509 3.0438 -0.9394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919616100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:38 Heat of formation + Delta-G solvation = -178.354788 kcal Electronic energy + Delta-G solvation = -25524.890937 eV Core-core repulsion = 21770.695783 eV Total energy + Delta-G solvation = -3754.195154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.98122 -41.02571 -38.64215 -37.77029 -35.96681 -35.37323 -34.28037 -33.61102 -32.38374 -29.39616 -28.85125 -26.24627 -26.07724 -24.71836 -22.94923 -22.45115 -22.19459 -21.25675 -19.98026 -18.84170 -18.54160 -18.15287 -17.73030 -17.28724 -16.88966 -16.71692 -16.49838 -15.95270 -15.51761 -15.25881 -15.05878 -14.78837 -14.58270 -14.18542 -14.03970 -13.92038 -13.80416 -13.74205 -13.67454 -12.88067 -12.85901 -12.72619 -12.63029 -12.51900 -12.36150 -12.26964 -12.11567 -12.02033 -11.88865 -11.71933 -11.68856 -11.61002 -11.44649 -11.36305 -11.20747 -10.84600 -10.59380 -9.76873 -8.23034 -6.34809 1.03983 1.37046 1.41231 1.41846 1.55142 1.61734 2.05748 2.40669 3.10997 3.31725 3.50942 3.64340 3.73966 3.95130 3.96397 4.00828 4.02331 4.06130 4.12838 4.14082 4.37529 4.41813 4.54739 4.62705 4.68025 4.70538 4.73921 4.76975 4.79791 4.83836 4.84933 4.90776 5.05437 5.07802 5.12938 5.26771 5.29527 5.33988 5.34677 5.42920 5.48886 5.50907 5.61434 5.78534 6.17310 6.35796 6.58968 6.81400 7.12543 7.34966 8.89372 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.035662 B = 0.001940 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.961136 B =14430.536598 C =14712.592548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.504 3.496 5 O -0.593 6.593 6 N -0.610 5.610 7 C 0.096 3.904 8 C -0.125 4.125 9 C -0.113 4.113 10 C -0.083 4.083 11 H 0.120 0.880 12 C 0.463 3.537 13 O -0.542 6.542 14 O -0.351 6.351 15 C 0.077 3.923 16 C -0.092 4.092 17 C 0.024 3.976 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.279 1.279 25 H -0.278 1.278 26 C 0.132 3.868 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.066 0.934 44 H -0.005 1.005 45 H -0.003 1.003 46 H 0.264 0.736 47 H 0.068 0.932 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.917 -2.757 -6.330 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.295 3.705 5 O -0.474 6.474 6 N -0.343 5.343 7 C -0.025 4.025 8 C -0.163 4.163 9 C -0.150 4.150 10 C -0.103 4.103 11 H 0.138 0.862 12 C 0.307 3.693 13 O -0.432 6.432 14 O -0.267 6.267 15 C 0.003 3.997 16 C -0.130 4.130 17 C -0.013 4.013 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.794 3.206 23 H -0.183 1.183 24 H -0.205 1.205 25 H -0.203 1.203 26 C 0.008 3.992 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.013 0.987 45 H 0.016 0.984 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -33.231 -3.451 -6.630 34.062 hybrid contribution 1.729 -0.044 0.284 1.753 sum -31.502 -3.496 -6.346 32.325 Atomic orbital electron populations 1.21748 0.93364 1.02302 1.02965 1.21284 0.96947 0.95141 1.01735 1.21816 0.87965 1.00096 1.06916 1.21695 0.92185 0.82327 0.74275 1.90706 1.71762 1.33002 1.51896 1.48268 1.05407 1.07657 1.72981 1.22321 0.98241 0.82036 0.99924 1.22016 0.92952 1.02335 0.99014 1.21613 0.97217 0.92103 1.04116 1.21445 0.84929 1.01374 1.02553 0.86212 1.24229 0.92396 0.74322 0.78383 1.90670 1.70244 1.45932 1.36351 1.86473 1.23591 1.65706 1.50962 1.23153 0.75300 1.00727 1.00511 1.21448 0.96007 0.99096 0.96426 1.18954 0.90480 0.95667 0.96208 1.21656 0.92855 1.31681 1.11881 0.91533 1.26030 0.97586 0.97347 0.99020 1.70112 1.03885 1.46207 1.37185 0.85318 0.78436 0.78148 0.78650 1.18257 1.20513 1.20337 1.21123 0.81024 1.00054 0.97037 0.91411 0.91376 0.92743 0.93256 0.93299 0.85999 0.85834 0.89687 0.85862 0.90464 0.86908 0.89656 0.90854 0.92331 0.91789 0.91104 0.91537 0.98704 0.98415 0.92701 0.91328 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.31 16 2 C -0.11 -1.41 5.22 30.59 0.16 -1.25 16 3 C -0.13 -1.13 4.05 29.84 0.12 -1.01 16 4 C 0.50 9.48 7.70 87.66 0.67 10.16 16 5 O -0.59 -17.69 15.40 -3.05 -0.05 -17.74 16 6 N -0.61 -9.54 2.97 -818.00 -2.43 -11.96 16 7 C 0.10 0.58 6.37 86.51 0.55 1.13 16 8 C -0.13 -0.79 6.10 30.82 0.19 -0.60 16 9 C -0.11 -1.54 5.10 30.62 0.16 -1.39 16 10 C -0.08 -1.71 2.78 -11.45 -0.03 -1.74 16 11 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 12 C 0.46 13.93 7.26 71.23 0.52 14.44 16 13 O -0.54 -20.02 15.67 21.96 0.34 -19.68 16 14 O -0.35 -11.40 10.11 -51.43 -0.52 -11.92 16 15 C 0.08 2.88 5.47 71.98 0.39 3.27 16 16 C -0.09 -3.82 5.53 30.60 0.17 -3.65 16 17 C 0.02 1.28 4.97 29.85 0.15 1.43 16 18 C -0.54 -30.75 9.11 25.60 0.23 -30.51 16 19 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 20 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 21 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 22 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.13 2.91 5.06 86.38 0.44 3.35 16 27 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.12 0.43 7.93 -2.39 -0.02 0.41 16 33 H 0.12 0.41 7.70 -2.39 -0.02 0.39 16 34 H 0.08 0.40 8.14 -2.38 -0.02 0.39 16 35 H 0.12 -0.03 5.93 -2.39 -0.01 -0.04 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 38 H 0.08 1.24 8.09 -2.38 -0.02 1.22 16 39 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 41 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 42 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 46 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 47 H 0.07 1.99 7.01 -2.39 -0.02 1.97 16 48 H 0.07 1.70 7.96 -2.39 -0.02 1.68 16 Total: -1.00 -77.49 389.21 5.47 -72.02 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 0.91 Total: 6.37 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.89 Total: -6.34 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -2.14 Total: -68.74 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.22 Total: -49.33 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -77.49 5.47 -72.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919616100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.333 kcal (2) G-P(sol) polarization free energy of solvation -77.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds