Wall clock time and date at job start Fri Apr 10 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46714 * 2 1 4 4 C 1.50704 * 109.46956 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00273 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99840 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63234 * 353.91475 * 6 4 3 8 8 C 1.53196 * 108.89366 * 126.34210 * 7 6 4 9 9 C 1.53350 * 109.14838 * 54.57807 * 8 7 6 10 10 C 1.53033 * 109.60626 * 298.70930 * 9 8 7 11 11 C 1.46930 * 120.63104 * 173.93455 * 6 4 3 12 12 H 1.09000 * 109.58989 * 113.79751 * 11 6 4 13 13 C 1.50703 * 109.58539 * 353.51758 * 11 6 4 14 14 O 1.20830 * 119.99805 * 298.37307 * 13 11 6 15 15 O 1.34229 * 120.00012 * 118.36855 * 13 11 6 16 16 C 1.45202 * 116.99895 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.46987 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.46879 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46883 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00432 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00328 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00705 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99658 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47491 * 90.00001 * 23 21 19 25 25 H 1.48497 * 109.47092 * 210.00054 * 23 21 19 26 26 H 1.48507 * 109.46961 * 329.99833 * 23 21 19 27 27 H 1.09003 * 109.47248 * 299.99609 * 1 2 3 28 28 H 1.08992 * 109.47096 * 59.99912 * 1 2 3 29 29 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47249 * 239.99955 * 2 1 3 31 31 H 1.08996 * 109.47573 * 119.99529 * 2 1 3 32 32 H 1.09005 * 109.47646 * 59.99956 * 3 2 1 33 33 H 1.09000 * 109.47493 * 299.99612 * 3 2 1 34 34 H 1.09007 * 109.58687 * 246.19404 * 7 6 4 35 35 H 1.08999 * 109.59159 * 6.48166 * 7 6 4 36 36 H 1.09006 * 109.49737 * 174.65508 * 8 7 6 37 37 H 1.09001 * 109.49481 * 294.75332 * 8 7 6 38 38 H 1.09011 * 109.41357 * 178.67681 * 9 8 7 39 39 H 1.08993 * 109.43224 * 58.76222 * 9 8 7 40 40 H 1.09005 * 109.49991 * 301.42466 * 10 9 8 41 41 H 1.09007 * 109.52220 * 181.34448 * 10 9 8 42 42 H 1.09000 * 109.47046 * 300.00455 * 16 15 13 43 43 H 1.09001 * 109.47044 * 60.00548 * 16 15 13 44 44 H 1.09006 * 109.47055 * 299.99932 * 17 16 15 45 45 H 1.09001 * 109.46927 * 60.00298 * 17 16 15 46 46 H 1.09002 * 109.47526 * 299.99703 * 18 17 16 47 47 H 1.09001 * 109.47281 * 60.00290 * 18 17 16 48 48 H 0.96999 * 120.00691 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0006 6 7 4.2208 2.6098 -0.0013 7 6 3.5062 3.8866 -0.1354 8 6 3.9047 4.8024 1.0263 9 6 5.4321 4.9342 1.0618 10 6 6.0611 3.5580 1.2905 11 6 5.6839 2.6297 0.1317 12 1 6.1298 2.9985 -0.7920 13 6 6.1845 1.2364 0.4132 14 8 5.8342 0.6596 1.4154 15 8 7.0196 0.6362 -0.4495 16 6 7.4617 -0.7055 -0.1138 17 6 8.4008 -1.2212 -1.2060 18 6 8.8662 -2.6352 -0.8525 19 6 9.7917 -3.1429 -1.9280 20 1 10.0244 -2.5197 -2.7788 21 6 10.3407 -4.4036 -1.8265 22 7 11.1479 -4.8470 -2.7652 23 14 9.9377 -5.4821 -0.3553 24 1 8.7356 -6.3004 -0.6559 25 1 11.0870 -6.3776 -0.0684 26 1 9.6702 -4.6254 0.8279 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7746 4.3580 -1.0809 35 1 2.4313 3.7085 -0.1080 36 1 3.4546 5.7852 0.8857 37 1 3.5551 4.3725 1.9649 38 1 5.7193 5.6040 1.8725 39 1 5.7831 5.3410 0.1135 40 1 5.6913 3.1400 2.2268 41 1 7.1456 3.6567 1.3393 42 1 7.9897 -0.6861 0.8396 43 1 6.5968 -1.3644 -0.0369 44 1 7.8731 -1.2405 -2.1596 45 1 9.2657 -0.5622 -1.2825 46 1 9.3937 -2.6164 0.1012 47 1 8.0011 -3.2940 -0.7763 48 1 11.5339 -5.7340 -2.6940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919618289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:40 Heat of formation + Delta-G solvation = -142.680913 kcal Electronic energy + Delta-G solvation = -26767.012700 eV Core-core repulsion = 23014.364482 eV Total energy + Delta-G solvation = -3752.648218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24887 -39.28625 -37.84062 -36.16671 -34.65136 -33.94471 -33.29507 -32.08116 -31.61754 -28.45125 -27.61534 -25.94992 -24.43411 -23.01184 -22.39270 -21.08735 -20.77008 -20.14848 -19.09353 -17.80814 -17.07311 -16.71380 -16.52040 -16.14660 -15.74163 -15.57719 -14.97962 -14.68845 -14.39004 -14.18363 -14.13079 -13.92286 -13.56305 -13.24081 -13.13470 -12.80764 -12.66537 -12.36240 -12.10529 -11.94933 -11.92991 -11.72468 -11.60788 -11.42306 -11.30118 -11.11768 -10.98770 -10.93767 -10.80879 -10.30204 -10.19419 -9.86899 -9.73983 -9.63815 -9.60378 -9.17091 -9.01548 -8.50583 -6.01231 -3.99515 2.16230 2.41310 2.90218 3.02144 3.35493 3.42213 3.47455 4.17822 4.25743 4.40476 4.48419 4.49122 4.56234 4.58902 4.72360 4.79066 4.91555 4.98961 5.08283 5.12969 5.18725 5.28001 5.29874 5.32603 5.37410 5.39245 5.48761 5.57662 5.60969 5.65795 5.75724 5.80175 5.88064 5.91307 6.00807 6.08151 6.13535 6.52831 6.53831 6.84745 6.97653 7.05334 7.32202 7.43008 7.80079 7.90558 8.22330 8.56718 9.03355 9.60864 11.12043 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.003077 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.181120 B = 9096.732479 C =10364.276343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.131 4.131 4 C 0.506 3.494 5 O -0.501 6.501 6 N -0.610 5.610 7 C 0.110 3.890 8 C -0.139 4.139 9 C -0.117 4.117 10 C -0.125 4.125 11 C 0.154 3.846 12 H 0.101 0.899 13 C 0.476 3.524 14 O -0.501 6.501 15 O -0.357 6.357 16 C 0.074 3.926 17 C -0.100 4.100 18 C -0.010 4.010 19 C -0.519 4.519 20 H 0.074 0.926 21 C 0.067 3.933 22 N -0.903 5.903 23 Si 0.879 3.121 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.018 0.982 47 H 0.015 0.985 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.448 24.055 7.565 33.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.295 3.705 5 O -0.375 6.375 6 N -0.348 5.348 7 C -0.012 4.012 8 C -0.177 4.177 9 C -0.154 4.154 10 C -0.163 4.163 11 C 0.050 3.950 12 H 0.119 0.881 13 C 0.318 3.682 14 O -0.388 6.388 15 O -0.274 6.274 16 C 0.001 3.999 17 C -0.138 4.138 18 C -0.048 4.048 19 C -0.557 4.557 20 H 0.092 0.908 21 C -0.134 4.134 22 N -0.542 5.542 23 Si 0.706 3.294 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.091 23.082 7.803 32.225 hybrid contribution -0.129 -0.675 0.768 1.030 sum -21.220 22.407 8.570 32.028 Atomic orbital electron populations 1.21779 0.95380 1.02118 1.01553 1.21321 0.95278 0.94475 1.04023 1.21697 0.90905 1.00494 1.04028 1.20980 0.90823 0.83024 0.75721 1.90799 1.68397 1.30808 1.47516 1.48094 1.05129 1.06970 1.74637 1.21808 0.97122 0.83202 0.99056 1.22027 0.96686 0.99893 0.99082 1.21554 0.94914 0.96139 1.02835 1.21886 1.01927 0.94741 0.97763 1.20689 0.81517 0.91588 1.01253 0.88082 1.22495 0.76338 0.87493 0.81868 1.90620 1.54579 1.64698 1.28934 1.86400 1.58877 1.32674 1.49430 1.23359 0.98400 0.78340 0.99771 1.21536 0.97117 0.98437 0.96690 1.19514 0.96406 0.91150 0.97717 1.21078 1.26693 1.00912 1.07028 0.90823 1.25008 0.94617 0.97727 0.96068 1.69907 1.31938 1.18634 1.33762 0.86786 0.78027 0.80652 0.83922 1.20197 1.21318 1.18946 0.92789 0.92725 0.92271 0.91015 0.91020 0.88902 0.88908 0.90702 0.89113 0.90166 0.91139 0.90814 0.91158 0.90125 0.89785 0.92094 0.91422 0.91733 0.91757 0.96344 0.96713 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.11 -1.10 5.22 -26.73 -0.14 -1.24 16 3 C -0.13 -1.09 4.06 -27.88 -0.11 -1.20 16 4 C 0.51 6.43 7.39 -10.98 -0.08 6.35 16 5 O -0.50 -9.02 11.75 -21.19 -0.25 -9.27 16 6 N -0.61 -6.25 2.97 -166.53 -0.50 -6.75 16 7 C 0.11 0.60 6.34 -3.71 -0.02 0.58 16 8 C -0.14 -0.64 6.11 -26.45 -0.16 -0.80 16 9 C -0.12 -0.65 5.89 -26.53 -0.16 -0.81 16 10 C -0.12 -1.12 5.32 -26.61 -0.14 -1.26 16 11 C 0.15 1.81 3.34 -68.75 -0.23 1.58 16 12 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.48 8.17 4.51 36.01 0.16 8.33 16 14 O -0.50 -10.02 14.36 -26.92 -0.39 -10.40 16 15 O -0.36 -6.76 10.22 -41.33 -0.42 -7.18 16 16 C 0.07 1.51 5.47 37.16 0.20 1.72 16 17 C -0.10 -2.20 5.53 -26.73 -0.15 -2.35 16 18 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 19 C -0.52 -15.42 9.66 -34.44 -0.33 -15.75 16 20 H 0.07 2.32 7.99 -52.49 -0.42 1.91 16 21 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 22 N -0.90 -28.58 13.96 55.43 0.77 -27.80 16 23 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.09 0.59 7.94 -51.93 -0.41 0.18 16 33 H 0.09 0.54 7.69 -51.93 -0.40 0.14 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 36 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.86 7.94 -51.93 -0.41 0.45 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 43 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 44 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 47 H 0.01 0.37 7.57 -51.93 -0.39 -0.02 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -37.09 380.48 -9.36 -46.45 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -8.64 Total: -4.68 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.00 Total: -4.01 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.28 Total: -34.55 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.06 Total: -26.85 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.09 -9.36 -46.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919618289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.229 kcal (2) G-P(sol) polarization free energy of solvation -37.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds