Wall clock time and date at job start Fri Apr 10 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46714 * 2 1 4 4 C 1.50704 * 109.46956 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00273 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99840 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63234 * 353.91475 * 6 4 3 8 8 C 1.53196 * 108.89366 * 126.34210 * 7 6 4 9 9 C 1.53350 * 109.14838 * 54.57807 * 8 7 6 10 10 C 1.53033 * 109.60626 * 298.70930 * 9 8 7 11 11 C 1.46930 * 120.63104 * 173.93455 * 6 4 3 12 12 H 1.09000 * 109.58989 * 113.79751 * 11 6 4 13 13 C 1.50703 * 109.58539 * 353.51758 * 11 6 4 14 14 O 1.20830 * 119.99805 * 298.37307 * 13 11 6 15 15 O 1.34229 * 120.00012 * 118.36855 * 13 11 6 16 16 C 1.45202 * 116.99895 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.46987 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.46879 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46883 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00432 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00328 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00705 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99658 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47491 * 90.00001 * 23 21 19 25 25 H 1.48497 * 109.47092 * 210.00054 * 23 21 19 26 26 H 1.48507 * 109.46961 * 329.99833 * 23 21 19 27 27 H 1.09003 * 109.47248 * 299.99609 * 1 2 3 28 28 H 1.08992 * 109.47096 * 59.99912 * 1 2 3 29 29 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47249 * 239.99955 * 2 1 3 31 31 H 1.08996 * 109.47573 * 119.99529 * 2 1 3 32 32 H 1.09005 * 109.47646 * 59.99956 * 3 2 1 33 33 H 1.09000 * 109.47493 * 299.99612 * 3 2 1 34 34 H 1.09007 * 109.58687 * 246.19404 * 7 6 4 35 35 H 1.08999 * 109.59159 * 6.48166 * 7 6 4 36 36 H 1.09006 * 109.49737 * 174.65508 * 8 7 6 37 37 H 1.09001 * 109.49481 * 294.75332 * 8 7 6 38 38 H 1.09011 * 109.41357 * 178.67681 * 9 8 7 39 39 H 1.08993 * 109.43224 * 58.76222 * 9 8 7 40 40 H 1.09005 * 109.49991 * 301.42466 * 10 9 8 41 41 H 1.09007 * 109.52220 * 181.34448 * 10 9 8 42 42 H 1.09000 * 109.47046 * 300.00455 * 16 15 13 43 43 H 1.09001 * 109.47044 * 60.00548 * 16 15 13 44 44 H 1.09006 * 109.47055 * 299.99932 * 17 16 15 45 45 H 1.09001 * 109.46927 * 60.00298 * 17 16 15 46 46 H 1.09002 * 109.47526 * 299.99703 * 18 17 16 47 47 H 1.09001 * 109.47281 * 60.00290 * 18 17 16 48 48 H 0.96999 * 120.00691 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0006 6 7 4.2208 2.6098 -0.0013 7 6 3.5062 3.8866 -0.1354 8 6 3.9047 4.8024 1.0263 9 6 5.4321 4.9342 1.0618 10 6 6.0611 3.5580 1.2905 11 6 5.6839 2.6297 0.1317 12 1 6.1298 2.9985 -0.7920 13 6 6.1845 1.2364 0.4132 14 8 5.8342 0.6596 1.4154 15 8 7.0196 0.6362 -0.4495 16 6 7.4617 -0.7055 -0.1138 17 6 8.4008 -1.2212 -1.2060 18 6 8.8662 -2.6352 -0.8525 19 6 9.7917 -3.1429 -1.9280 20 1 10.0244 -2.5197 -2.7788 21 6 10.3407 -4.4036 -1.8265 22 7 11.1479 -4.8470 -2.7652 23 14 9.9377 -5.4821 -0.3553 24 1 8.7356 -6.3004 -0.6559 25 1 11.0870 -6.3776 -0.0684 26 1 9.6702 -4.6254 0.8279 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7746 4.3580 -1.0809 35 1 2.4313 3.7085 -0.1080 36 1 3.4546 5.7852 0.8857 37 1 3.5551 4.3725 1.9649 38 1 5.7193 5.6040 1.8725 39 1 5.7831 5.3410 0.1135 40 1 5.6913 3.1400 2.2268 41 1 7.1456 3.6567 1.3393 42 1 7.9897 -0.6861 0.8396 43 1 6.5968 -1.3644 -0.0369 44 1 7.8731 -1.2405 -2.1596 45 1 9.2657 -0.5622 -1.2825 46 1 9.3937 -2.6164 0.1012 47 1 8.0011 -3.2940 -0.7763 48 1 11.5339 -5.7340 -2.6940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919618289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:40 Heat of formation + Delta-G solvation = -165.066617 kcal Electronic energy + Delta-G solvation = -26767.983417 eV Core-core repulsion = 23014.364482 eV Total energy + Delta-G solvation = -3753.618935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28826 -40.52808 -38.64398 -37.63809 -35.96456 -35.42949 -33.98411 -33.93608 -32.65070 -29.55995 -29.08219 -26.82492 -25.38399 -24.48257 -23.30732 -22.16932 -21.93277 -21.61309 -19.94563 -19.07041 -18.91141 -18.11403 -17.68520 -17.12848 -16.93041 -16.67137 -16.29064 -15.66668 -15.60493 -15.18369 -15.09379 -14.84771 -14.81725 -14.50288 -14.17389 -13.99940 -13.89022 -13.74665 -13.54202 -12.95623 -12.83012 -12.71420 -12.68611 -12.52443 -12.21788 -12.13021 -12.03194 -11.99474 -11.80440 -11.77313 -11.69635 -11.61728 -11.45086 -11.40471 -11.19268 -10.81933 -10.74646 -9.80917 -8.34484 -6.39456 1.09732 1.32830 1.33514 1.46253 1.48797 1.66175 2.00160 2.31809 3.00012 3.38179 3.65679 3.69841 3.78374 3.91942 3.93221 3.99318 4.03885 4.04786 4.07667 4.16917 4.31087 4.41622 4.53363 4.61585 4.65509 4.66813 4.68688 4.69255 4.75748 4.82906 4.85228 4.90032 5.02283 5.10266 5.18489 5.21029 5.22078 5.28413 5.36922 5.41301 5.42825 5.44034 5.53794 5.61863 6.21228 6.22349 6.66599 6.80286 7.07204 7.24888 8.82081 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.003077 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.181120 B = 9096.732479 C =10364.276343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.121 4.121 4 C 0.490 3.510 5 O -0.567 6.567 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.135 4.135 9 C -0.112 4.112 10 C -0.120 4.120 11 C 0.154 3.846 12 H 0.118 0.882 13 C 0.468 3.532 14 O -0.535 6.535 15 O -0.365 6.365 16 C 0.087 3.913 17 C -0.088 4.088 18 C -0.007 4.007 19 C -0.535 4.535 20 H 0.037 0.963 21 C 0.009 3.991 22 N -0.947 5.947 23 Si 0.948 3.052 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.251 1.251 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.026 0.974 47 H 0.017 0.983 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.781 26.863 8.629 36.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.160 4.160 4 C 0.281 3.719 5 O -0.446 6.446 6 N -0.343 5.343 7 C -0.019 4.019 8 C -0.173 4.173 9 C -0.150 4.150 10 C -0.158 4.158 11 C 0.050 3.950 12 H 0.136 0.864 13 C 0.313 3.687 14 O -0.424 6.424 15 O -0.282 6.282 16 C 0.013 3.987 17 C -0.126 4.126 18 C -0.045 4.045 19 C -0.573 4.573 20 H 0.056 0.944 21 C -0.189 4.189 22 N -0.587 5.587 23 Si 0.771 3.229 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.174 1.174 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.036 0.964 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.449 25.972 8.862 36.096 hybrid contribution 0.607 -1.464 0.365 1.626 sum -22.842 24.508 9.227 34.749 Atomic orbital electron populations 1.21728 0.92833 1.02330 1.03156 1.21280 0.97370 0.95291 1.01267 1.21752 0.87534 0.99841 1.06862 1.21885 0.92703 0.82697 0.74603 1.90766 1.69743 1.33254 1.50835 1.48344 1.04441 1.08268 1.73234 1.22270 0.98145 0.81012 1.00469 1.22042 0.95892 1.01146 0.98179 1.21588 0.95549 0.93658 1.04178 1.21918 1.02424 0.96085 0.95416 1.20890 0.82855 0.88132 1.03156 0.86424 1.23651 0.75045 0.89123 0.80888 1.90587 1.55416 1.66009 1.30386 1.86393 1.59752 1.31708 1.50362 1.22960 0.97306 0.79366 0.99040 1.21302 0.97529 0.96876 0.96886 1.19427 0.95586 0.92959 0.96493 1.21357 1.27704 1.00996 1.07195 0.94417 1.25953 0.94284 0.99276 0.99347 1.70040 1.33152 1.19485 1.36009 0.85694 0.78315 0.78759 0.80143 1.19215 1.20203 1.17435 0.91242 0.90917 0.92889 0.93604 0.94174 0.86150 0.85414 0.88669 0.86550 0.86992 0.92129 0.89477 0.89622 0.92322 0.89568 0.91673 0.93066 0.92427 0.91354 0.95617 0.96442 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.11 -2.22 5.22 30.59 0.16 -2.06 16 3 C -0.12 -1.75 4.06 29.85 0.12 -1.63 16 4 C 0.49 12.26 7.39 87.66 0.65 12.91 16 5 O -0.57 -21.39 11.75 22.55 0.26 -21.13 16 6 N -0.61 -11.36 2.97 -799.16 -2.38 -13.74 16 7 C 0.10 0.68 6.34 86.36 0.55 1.23 16 8 C -0.13 -0.68 6.11 30.78 0.19 -0.49 16 9 C -0.11 -0.87 5.89 30.72 0.18 -0.68 16 10 C -0.12 -2.00 5.32 30.67 0.16 -1.83 16 11 C 0.15 3.49 3.34 44.23 0.15 3.64 16 12 H 0.12 2.24 8.14 -2.39 -0.02 2.23 16 13 C 0.47 16.52 4.51 71.24 0.32 16.84 16 14 O -0.53 -22.33 14.36 29.76 0.43 -21.91 16 15 O -0.37 -14.22 10.22 -49.42 -0.51 -14.73 16 16 C 0.09 3.65 5.47 71.98 0.39 4.04 16 17 C -0.09 -3.97 5.53 30.59 0.17 -3.80 16 18 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 19 C -0.53 -32.61 9.66 25.60 0.25 -32.36 16 20 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 21 C 0.01 0.53 5.47 84.66 0.46 1.00 16 22 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 23 Si 0.95 46.57 27.47 68.60 1.88 48.46 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 31 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 32 H 0.12 1.11 7.94 -2.38 -0.02 1.09 16 33 H 0.13 0.97 7.69 -2.39 -0.02 0.95 16 34 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.12 0.22 5.93 -2.39 -0.01 0.21 16 36 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 37 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 38 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.06 1.24 7.94 -2.38 -0.02 1.22 16 41 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 43 H 0.05 2.30 8.13 -2.39 -0.02 2.28 16 44 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 45 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 47 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 48 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -86.09 380.48 5.43 -80.65 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.85 Total: 7.71 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.58 Total: -4.51 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.08 Total: -74.55 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: 0.19 Total: -57.76 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.88 Total: 48.46 kcal Total: -86.09 5.43 -80.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919618289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.412 kcal (2) G-P(sol) polarization free energy of solvation -86.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds