Wall clock time and date at job start Fri Apr 10 2020 22:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 H 1.08996 * 109.47455 * 305.00093 * 3 2 1 5 5 C 1.50699 * 109.46841 * 185.00066 * 3 2 1 6 6 H 1.08002 * 119.99941 * 239.99932 * 5 3 2 7 7 C 1.37875 * 120.00019 * 60.00372 * 5 3 2 8 8 N 1.31511 * 120.00036 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00116 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47149 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47282 * 119.99889 * 9 7 5 12 12 H 1.48497 * 109.47339 * 240.00123 * 9 7 5 13 13 N 1.46495 * 109.46841 * 65.00459 * 3 2 1 14 14 C 1.34780 * 119.99970 * 274.99550 * 13 3 2 15 15 O 1.21283 * 120.00082 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00028 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.45332 * 60.02897 * 16 14 13 18 18 C 1.53004 * 109.46443 * 180.02562 * 16 14 13 19 19 C 1.53018 * 109.46496 * 180.15957 * 18 16 14 20 20 C 1.52961 * 109.43537 * 300.20610 * 19 18 16 21 21 C 1.52981 * 109.80665 * 59.70377 * 20 19 18 22 22 C 1.52990 * 109.46561 * 300.05271 * 16 14 13 23 23 O 1.43708 * 109.40934 * 299.61340 * 20 19 18 24 24 C 1.44800 * 104.78960 * 215.86469 * 23 20 19 25 25 C 1.54919 * 101.72797 * 36.06333 * 24 23 20 26 26 O 1.43298 * 109.67119 * 180.27649 * 20 19 18 27 27 H 1.08998 * 109.47348 * 59.99735 * 1 2 3 28 28 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46904 * 299.99625 * 1 2 3 30 30 H 1.09000 * 109.46904 * 240.00374 * 2 1 3 31 31 H 1.08998 * 109.47348 * 120.00265 * 2 1 3 32 32 H 0.97004 * 119.99893 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00784 * 94.99770 * 13 3 2 34 34 H 1.09004 * 109.47492 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.47346 * 299.96903 * 17 16 14 36 36 H 1.08996 * 109.47397 * 59.97813 * 17 16 14 37 37 H 1.08997 * 109.47015 * 60.16092 * 18 16 14 38 38 H 1.08999 * 109.47054 * 300.15941 * 18 16 14 39 39 H 1.09002 * 109.47979 * 60.20058 * 19 18 16 40 40 H 1.08995 * 109.47831 * 180.21812 * 19 18 16 41 41 H 1.08997 * 109.47113 * 180.31428 * 21 20 19 42 42 H 1.08992 * 109.48549 * 60.29765 * 21 20 19 43 43 H 1.08995 * 109.47165 * 299.83723 * 22 16 14 44 44 H 1.08997 * 109.47110 * 59.84656 * 22 16 14 45 45 H 1.08999 * 110.97717 * 277.95626 * 24 23 20 46 46 H 1.09000 * 111.00438 * 154.18911 * 24 23 20 47 47 H 1.08997 * 110.69452 * 206.07484 * 25 24 23 48 48 H 1.08994 * 110.84350 * 82.93977 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5988 1.5462 -0.1942 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6168 -2.6103 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3396 2.6320 0.4345 16 6 0.0363 3.3375 2.6550 17 6 1.0066 4.4822 2.9534 18 6 -1.3829 3.8933 2.5215 19 6 -1.7864 4.5803 3.8279 20 6 -1.7362 3.5669 4.9725 21 6 -0.3195 3.0050 5.1056 22 6 0.0811 2.3204 3.7970 23 8 -2.6520 2.4934 4.7005 24 6 -3.1885 2.1282 5.9949 25 6 -3.2777 3.5054 6.6987 26 8 -2.1195 4.2036 6.1977 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0610 -2.9499 33 1 2.2719 2.1231 1.9979 34 1 0.7182 4.9696 3.8847 35 1 2.0176 4.0860 3.0488 36 1 0.9754 5.2065 2.1395 37 1 -2.0744 3.0774 2.3114 38 1 -1.4149 4.6159 1.7060 39 1 -1.0971 5.3985 4.0363 40 1 -2.7989 4.9730 3.7344 41 1 -0.2912 2.2797 5.9187 42 1 0.3752 3.8173 5.3188 43 1 -0.6118 1.5061 3.5856 44 1 1.0917 1.9228 3.8899 45 1 -2.5081 1.4622 6.5255 46 1 -4.1753 1.6761 5.8954 47 1 -3.2193 3.3894 7.7809 48 1 -4.1929 4.0262 6.4174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935398816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:43 Heat of formation + Delta-G solvation = -145.664818 kcal Electronic energy + Delta-G solvation = -28147.137646 eV Core-core repulsion = 24394.360036 eV Total energy + Delta-G solvation = -3752.777610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20009 -39.52333 -36.97194 -35.13961 -34.90950 -32.51227 -31.68614 -30.92310 -30.50709 -28.71651 -26.91792 -26.40392 -23.59050 -23.31244 -22.72612 -22.33293 -20.40284 -19.37418 -18.48678 -17.34339 -17.21684 -16.62715 -15.74520 -15.67294 -15.45767 -14.93615 -14.80734 -14.42805 -14.05378 -13.80221 -13.54908 -13.32113 -13.10314 -12.96054 -12.64863 -12.60945 -12.25039 -12.12144 -11.84112 -11.76772 -11.44044 -11.35021 -11.25835 -11.17219 -11.05624 -10.93752 -10.80607 -10.57320 -10.40187 -10.29529 -10.25346 -10.09727 -9.57403 -9.47302 -8.99212 -8.73338 -8.45746 -7.72572 -6.09549 -4.18608 3.19108 3.24648 3.32648 3.35088 3.51302 3.77431 4.14145 4.32155 4.40282 4.52812 4.60180 4.67201 4.90395 5.01357 5.06172 5.15124 5.19996 5.22024 5.29896 5.34013 5.45361 5.47030 5.59080 5.65108 5.72009 5.82600 5.87055 5.96235 6.07768 6.12801 6.21443 6.30551 6.44020 6.46125 6.51761 6.60325 6.72312 6.96548 7.09938 7.25729 7.43057 7.54575 7.66529 7.79123 7.95476 8.22860 8.75966 8.83198 9.24199 9.49501 10.95708 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.003433 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.234252 B = 8154.427154 C = 8450.083348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.513 3.487 15 O -0.548 6.548 16 C -0.081 4.081 17 C -0.144 4.144 18 C -0.086 4.086 19 C -0.119 4.119 20 C 0.258 3.742 21 C -0.134 4.134 22 C -0.099 4.099 23 O -0.361 6.361 24 C 0.013 3.987 25 C 0.021 3.979 26 O -0.381 6.381 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.386 0.614 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.386 5.547 18.029 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.354 5.354 14 C 0.297 3.703 15 O -0.427 6.427 16 C -0.085 4.085 17 C -0.201 4.201 18 C -0.124 4.124 19 C -0.157 4.157 20 C 0.181 3.819 21 C -0.171 4.171 22 C -0.137 4.137 23 O -0.281 6.281 24 C -0.064 4.064 25 C -0.056 4.056 26 O -0.302 6.302 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.218 0.782 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.836 5.495 17.015 20.907 hybrid contribution 1.236 -0.221 0.414 1.322 sum -9.599 5.274 17.429 20.585 Atomic orbital electron populations 1.21835 0.98347 0.97915 1.01302 1.21924 0.92608 0.99898 1.02122 1.18753 0.94055 0.89141 0.81223 0.93433 1.21281 0.90842 1.38739 1.06168 0.92134 1.24886 0.98491 0.94892 0.95449 1.69909 1.34954 1.37756 1.09339 0.86430 0.85057 0.77731 0.78083 1.19769 1.20927 1.20928 1.46472 1.14722 1.55970 1.18268 1.20143 0.82610 0.79011 0.88531 1.90654 1.51502 1.59918 1.40587 1.20826 0.97055 0.96299 0.94306 1.21952 0.98624 0.97579 1.01960 1.21249 0.94653 1.00895 0.95632 1.21912 1.02816 0.97292 0.93675 1.23408 0.89716 0.84244 0.84500 1.22118 0.95242 1.01190 0.98589 1.21458 1.02393 0.97673 0.92178 1.89342 1.59820 1.51890 1.27041 1.24359 1.00719 0.96876 0.84426 1.24158 0.89750 0.91742 0.99938 1.88877 1.46119 1.56384 1.38810 0.93227 0.96017 0.94149 0.88419 0.95165 0.92684 0.78173 0.91675 0.91917 0.92029 0.90421 0.90757 0.89820 0.90958 0.91305 0.89790 0.90643 0.90852 0.90774 0.87528 0.88556 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.71 -14.56 4.81 -54.93 -0.26 -14.83 16 14 C 0.51 10.09 5.05 -10.99 -0.06 10.03 16 15 O -0.55 -12.82 13.12 5.56 0.07 -12.75 16 16 C -0.08 -1.20 0.61 -155.67 -0.10 -1.30 16 17 C -0.14 -1.83 7.67 37.16 0.28 -1.54 16 18 C -0.09 -1.25 3.88 -26.72 -0.10 -1.35 16 19 C -0.12 -1.43 5.05 -26.74 -0.14 -1.56 16 20 C 0.26 3.03 1.03 -26.76 -0.03 3.01 16 21 C -0.13 -1.50 5.01 -26.73 -0.13 -1.63 16 22 C -0.10 -1.31 4.49 -26.72 -0.12 -1.43 16 23 O -0.36 -4.47 9.66 -59.04 -0.57 -5.04 16 24 C 0.01 0.11 7.91 38.17 0.30 0.41 16 25 C 0.02 0.16 8.08 38.17 0.31 0.47 16 26 O -0.38 -4.28 10.87 -59.04 -0.64 -4.92 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.90 5.64 -51.93 -0.29 0.60 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.39 7.03 7.37 -40.82 -0.30 6.73 16 34 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 35 H 0.06 0.78 7.56 -51.93 -0.39 0.38 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.28 7.65 -51.93 -0.40 0.88 16 38 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.08 0.92 6.44 -51.93 -0.33 0.58 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 43 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 44 H 0.07 0.92 7.56 -51.93 -0.39 0.53 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -30.98 359.56 -8.50 -39.48 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.97 Total: 8.16 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.15 Total: -6.97 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.36 Total: -39.02 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.14 Total: -22.71 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.98 -8.50 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.181 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds