Wall clock time and date at job start Fri Apr 10 2020 22:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 H 1.08996 * 109.47455 * 305.00093 * 3 2 1 5 5 C 1.50699 * 109.46841 * 185.00066 * 3 2 1 6 6 H 1.08002 * 119.99941 * 239.99932 * 5 3 2 7 7 C 1.37875 * 120.00019 * 60.00372 * 5 3 2 8 8 N 1.31511 * 120.00036 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00116 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47149 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47282 * 119.99889 * 9 7 5 12 12 H 1.48497 * 109.47339 * 240.00123 * 9 7 5 13 13 N 1.46495 * 109.46841 * 65.00459 * 3 2 1 14 14 C 1.34780 * 119.99970 * 274.99550 * 13 3 2 15 15 O 1.21283 * 120.00082 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00028 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.45332 * 60.02897 * 16 14 13 18 18 C 1.53004 * 109.46443 * 180.02562 * 16 14 13 19 19 C 1.53018 * 109.46496 * 180.15957 * 18 16 14 20 20 C 1.52961 * 109.43537 * 300.20610 * 19 18 16 21 21 C 1.52981 * 109.80665 * 59.70377 * 20 19 18 22 22 C 1.52990 * 109.46561 * 300.05271 * 16 14 13 23 23 O 1.43708 * 109.40934 * 299.61340 * 20 19 18 24 24 C 1.44800 * 104.78960 * 215.86469 * 23 20 19 25 25 C 1.54919 * 101.72797 * 36.06333 * 24 23 20 26 26 O 1.43298 * 109.67119 * 180.27649 * 20 19 18 27 27 H 1.08998 * 109.47348 * 59.99735 * 1 2 3 28 28 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46904 * 299.99625 * 1 2 3 30 30 H 1.09000 * 109.46904 * 240.00374 * 2 1 3 31 31 H 1.08998 * 109.47348 * 120.00265 * 2 1 3 32 32 H 0.97004 * 119.99893 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00784 * 94.99770 * 13 3 2 34 34 H 1.09004 * 109.47492 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.47346 * 299.96903 * 17 16 14 36 36 H 1.08996 * 109.47397 * 59.97813 * 17 16 14 37 37 H 1.08997 * 109.47015 * 60.16092 * 18 16 14 38 38 H 1.08999 * 109.47054 * 300.15941 * 18 16 14 39 39 H 1.09002 * 109.47979 * 60.20058 * 19 18 16 40 40 H 1.08995 * 109.47831 * 180.21812 * 19 18 16 41 41 H 1.08997 * 109.47113 * 180.31428 * 21 20 19 42 42 H 1.08992 * 109.48549 * 60.29765 * 21 20 19 43 43 H 1.08995 * 109.47165 * 299.83723 * 22 16 14 44 44 H 1.08997 * 109.47110 * 59.84656 * 22 16 14 45 45 H 1.08999 * 110.97717 * 277.95626 * 24 23 20 46 46 H 1.09000 * 111.00438 * 154.18911 * 24 23 20 47 47 H 1.08997 * 110.69452 * 206.07484 * 25 24 23 48 48 H 1.08994 * 110.84350 * 82.93977 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5988 1.5462 -0.1942 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6168 -2.6103 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3396 2.6320 0.4345 16 6 0.0363 3.3375 2.6550 17 6 1.0066 4.4822 2.9534 18 6 -1.3829 3.8933 2.5215 19 6 -1.7864 4.5803 3.8279 20 6 -1.7362 3.5669 4.9725 21 6 -0.3195 3.0050 5.1056 22 6 0.0811 2.3204 3.7970 23 8 -2.6520 2.4934 4.7005 24 6 -3.1885 2.1282 5.9949 25 6 -3.2777 3.5054 6.6987 26 8 -2.1195 4.2036 6.1977 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0610 -2.9499 33 1 2.2719 2.1231 1.9979 34 1 0.7182 4.9696 3.8847 35 1 2.0176 4.0860 3.0488 36 1 0.9754 5.2065 2.1395 37 1 -2.0744 3.0774 2.3114 38 1 -1.4149 4.6159 1.7060 39 1 -1.0971 5.3985 4.0363 40 1 -2.7989 4.9730 3.7344 41 1 -0.2912 2.2797 5.9187 42 1 0.3752 3.8173 5.3188 43 1 -0.6118 1.5061 3.5856 44 1 1.0917 1.9228 3.8899 45 1 -2.5081 1.4622 6.5255 46 1 -4.1753 1.6761 5.8954 47 1 -3.2193 3.3894 7.7809 48 1 -4.1929 4.0262 6.4174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935398816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:42 Heat of formation + Delta-G solvation = -165.702219 kcal Electronic energy + Delta-G solvation = -28148.006533 eV Core-core repulsion = 24394.360036 eV Total energy + Delta-G solvation = -3753.646497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15197 -40.88890 -38.28666 -36.77908 -35.93870 -34.33085 -33.17001 -32.04035 -31.90390 -29.60440 -28.80364 -27.48566 -25.18218 -24.33251 -23.74621 -23.64429 -21.90534 -21.11450 -19.80177 -18.76909 -18.07654 -17.62512 -17.34218 -17.20721 -16.50251 -16.35764 -16.20531 -15.74502 -15.40901 -15.01519 -14.62061 -14.58456 -14.33427 -14.22977 -13.92388 -13.66922 -13.61639 -13.34348 -13.21935 -13.15203 -12.87857 -12.85553 -12.73058 -12.70324 -12.45018 -12.18078 -12.17459 -12.10758 -12.01454 -11.62963 -11.55348 -11.36302 -11.07343 -11.01740 -10.56607 -10.36019 -10.32126 -9.56674 -8.14771 -6.31999 1.44153 1.45383 1.57104 1.93025 2.36277 2.45725 2.71236 2.98632 3.14607 3.52942 3.66069 3.74413 3.84926 3.98209 4.03964 4.14722 4.24852 4.27066 4.33928 4.46651 4.48612 4.54230 4.56653 4.64898 4.69199 4.73974 4.79055 4.81361 4.84459 5.00330 5.01393 5.03175 5.06025 5.11241 5.15005 5.23495 5.26054 5.35938 5.44916 5.49971 5.57844 5.67221 5.81128 5.96249 6.18913 6.19627 6.77058 7.05890 7.35649 7.65749 8.90732 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.003433 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.234252 B = 8154.427154 C = 8450.083348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.702 5.702 14 C 0.507 3.493 15 O -0.590 6.590 16 C -0.071 4.071 17 C -0.141 4.141 18 C -0.080 4.080 19 C -0.114 4.114 20 C 0.256 3.744 21 C -0.127 4.127 22 C -0.094 4.094 23 O -0.389 6.389 24 C 0.006 3.994 25 C 0.018 3.982 26 O -0.391 6.391 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 6.081 21.147 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.013 0.987 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.350 5.350 14 C 0.294 3.706 15 O -0.472 6.472 16 C -0.074 4.074 17 C -0.198 4.198 18 C -0.118 4.118 19 C -0.152 4.152 20 C 0.180 3.820 21 C -0.165 4.165 22 C -0.131 4.131 23 O -0.310 6.310 24 C -0.070 4.070 25 C -0.058 4.058 26 O -0.313 6.313 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.974 6.040 20.185 23.311 hybrid contribution 0.854 -0.396 -0.571 1.101 sum -9.120 5.644 19.614 22.355 Atomic orbital electron populations 1.21664 0.97196 0.98933 1.00132 1.21773 0.93517 0.99365 1.01194 1.18330 0.93586 0.89032 0.81551 0.98728 1.21611 0.91427 1.38658 1.06602 0.91015 1.25777 1.03265 0.94447 0.95071 1.70064 1.36965 1.38511 1.09894 0.85335 0.79224 0.77783 0.78208 1.18310 1.20520 1.21132 1.46234 1.15595 1.55956 1.17255 1.21082 0.81529 0.78093 0.89854 1.90635 1.52566 1.61281 1.42687 1.20784 0.97628 0.97120 0.91895 1.21975 0.98308 0.96484 1.03043 1.21135 0.93963 0.99804 0.96941 1.21868 1.03296 0.97623 0.92366 1.23355 0.90019 0.84054 0.84589 1.22082 0.95223 1.01799 0.97376 1.21402 1.02477 0.96707 0.92561 1.89329 1.60230 1.52182 1.29294 1.24622 1.01747 0.97509 0.83088 1.24388 0.89046 0.91074 1.01314 1.88850 1.47278 1.56882 1.38295 0.95787 0.93761 0.93868 0.91096 0.94079 0.92692 0.76457 0.88716 0.91209 0.92960 0.93075 0.92157 0.88269 0.90747 0.89974 0.88250 0.92657 0.89924 0.89809 0.85865 0.85936 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.51 71.98 0.61 -5.11 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.47 2.24 44.25 0.10 14.57 16 4 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 5 C -0.54 -28.91 8.73 25.60 0.22 -28.69 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -52.90 11.29 21.45 0.24 -52.66 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.70 -29.20 4.81 -446.10 -2.14 -31.35 16 14 C 0.51 20.42 5.05 87.66 0.44 20.86 16 15 O -0.59 -29.03 13.12 -3.04 -0.04 -29.07 16 16 C -0.07 -2.06 0.61 -52.93 -0.03 -2.09 16 17 C -0.14 -3.30 7.67 71.98 0.55 -2.75 16 18 C -0.08 -2.34 3.88 30.60 0.12 -2.22 16 19 C -0.11 -2.56 5.05 30.59 0.15 -2.41 16 20 C 0.26 5.49 1.03 30.57 0.03 5.52 16 21 C -0.13 -2.49 5.01 30.60 0.15 -2.34 16 22 C -0.09 -2.32 4.49 30.60 0.14 -2.19 16 23 O -0.39 -9.17 9.66 -126.22 -1.22 -10.39 16 24 C 0.01 0.09 7.91 72.64 0.57 0.66 16 25 C 0.02 0.23 8.08 72.64 0.59 0.82 16 26 O -0.39 -7.64 10.87 -126.22 -1.37 -9.01 16 27 H 0.02 1.20 7.85 -2.39 -0.02 1.19 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 30 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.40 14.22 7.37 -92.71 -0.68 13.53 16 34 H 0.09 1.68 4.81 -2.39 -0.01 1.67 16 35 H 0.07 1.55 7.56 -2.39 -0.02 1.53 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.75 7.65 -2.39 -0.02 1.73 16 38 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 39 H 0.10 1.90 6.44 -2.39 -0.02 1.89 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.10 1.66 6.44 -2.39 -0.02 1.65 16 43 H 0.05 1.61 7.69 -2.39 -0.02 1.59 16 44 H 0.08 1.89 7.56 -2.39 -0.02 1.87 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -69.64 359.56 2.03 -67.61 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.27 Total: 30.62 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.27 Total: -10.00 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -1.90 Total: -84.00 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -2.63 Total: -48.47 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -69.64 2.03 -67.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.094 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds