Wall clock time and date at job start Fri Apr 10 2020 22:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 C 1.53005 * 109.47343 * 120.00326 * 2 1 3 5 5 C 1.52997 * 109.47344 * 64.99442 * 4 2 1 6 6 N 1.46900 * 109.47119 * 179.97438 * 5 4 2 7 7 C 1.46898 * 110.99415 * 66.05304 * 6 5 4 8 8 C 1.50703 * 109.46917 * 199.29937 * 7 6 5 9 9 H 1.07999 * 120.00074 * 355.07067 * 8 7 6 10 10 C 1.37879 * 120.00036 * 175.06926 * 8 7 6 11 11 N 1.31506 * 120.00143 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99870 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47232 * 89.99735 * 12 10 8 14 14 H 1.48503 * 109.47130 * 209.99623 * 12 10 8 15 15 H 1.48500 * 109.46976 * 329.99976 * 12 10 8 16 16 C 1.46894 * 110.99797 * 190.00071 * 6 5 4 17 17 C 1.52998 * 109.47100 * 75.77631 * 16 6 5 18 18 C 1.50703 * 109.47523 * 174.85444 * 17 16 6 19 19 C 1.38234 * 119.98902 * 265.23346 * 18 17 16 20 20 C 1.38177 * 120.05378 * 180.22787 * 19 18 17 21 21 C 1.38502 * 120.02400 * 359.78907 * 20 19 18 22 22 F 1.35100 * 120.01200 * 180.02562 * 21 20 19 23 23 C 1.38399 * 119.97337 * 359.97438 * 21 20 19 24 24 C 1.38440 * 119.94719 * 359.97438 * 23 21 20 25 25 F 1.35102 * 120.01069 * 179.97438 * 24 23 21 26 26 H 1.08997 * 109.46949 * 299.99797 * 1 2 3 27 27 H 1.08993 * 109.46895 * 59.99952 * 1 2 3 28 28 H 1.09001 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47007 * 239.99872 * 2 1 3 30 30 H 1.09000 * 109.47059 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46989 * 299.99891 * 3 2 1 32 32 H 1.08997 * 109.47003 * 60.00236 * 3 2 1 33 33 H 1.09002 * 109.46690 * 305.00011 * 4 2 1 34 34 H 1.09004 * 109.47296 * 185.00281 * 4 2 1 35 35 H 1.09002 * 109.46763 * 60.00613 * 5 4 2 36 36 H 1.08996 * 109.47388 * 300.00947 * 5 4 2 37 37 H 1.09000 * 109.47522 * 319.29910 * 7 6 5 38 38 H 1.08995 * 109.47741 * 79.29961 * 7 6 5 39 39 H 0.96998 * 120.00607 * 180.02562 * 11 10 8 40 40 H 1.08995 * 109.47718 * 315.77159 * 16 6 5 41 41 H 1.09003 * 109.47274 * 195.77057 * 16 6 5 42 42 H 1.09000 * 109.47314 * 54.85535 * 17 16 6 43 43 H 1.09000 * 109.46966 * 294.85351 * 17 16 6 44 44 H 1.08008 * 119.96829 * 359.97289 * 19 18 17 45 45 H 1.08005 * 119.99003 * 179.76247 * 20 19 18 46 46 H 1.08001 * 120.02181 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1255 -2.8881 2.3871 7 6 1.4524 -2.3908 3.5944 8 6 2.2713 -2.7461 4.8085 9 1 3.1569 -3.3553 4.7032 10 6 1.8900 -2.2935 6.0539 11 7 0.8120 -1.5514 6.1821 12 14 2.9055 -2.7334 7.5588 13 1 3.9460 -1.6960 7.7743 14 1 2.0212 -2.8024 8.7498 15 1 3.5567 -4.0513 7.3485 16 6 1.9662 -4.3426 2.2569 17 6 3.0426 -4.8915 1.3183 18 6 2.9592 -6.3958 1.2834 19 6 3.7616 -7.1519 2.1173 20 6 3.6896 -8.5314 2.0830 21 6 2.8099 -9.1581 1.2160 22 9 2.7393 -10.5068 1.1831 23 6 2.0025 -8.4021 0.3841 24 6 2.0749 -7.0200 0.4201 25 9 1.2877 -6.2808 -0.3917 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1264 -0.6444 1.2952 35 1 2.0699 -2.6550 0.3003 36 1 0.5490 -2.2724 1.1420 37 1 1.3469 -1.3077 3.5315 38 1 0.4661 -2.8478 3.6749 39 1 0.5439 -1.2326 7.0581 40 1 0.9804 -4.5652 1.8488 41 1 2.0673 -4.8084 3.2372 42 1 4.0264 -4.5905 1.6782 43 1 2.8859 -4.4956 0.3149 44 1 4.4483 -6.6640 2.7932 45 1 4.3197 -9.1211 2.7323 46 1 1.3160 -8.8899 -0.2920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116530513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:45 Heat of formation + Delta-G solvation = -89.542150 kcal Electronic energy + Delta-G solvation = -25809.203550 eV Core-core repulsion = 21947.772086 eV Total energy + Delta-G solvation = -3861.431464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.176 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.09571 -48.98717 -39.09724 -37.60646 -35.51603 -33.10669 -32.23204 -30.88219 -29.04930 -28.13572 -26.93905 -25.90379 -23.34939 -23.13684 -22.78747 -21.24095 -19.93205 -19.34617 -18.25651 -17.26771 -16.48819 -16.04921 -15.97234 -15.53452 -15.34796 -14.98682 -14.77615 -14.60162 -14.45868 -14.12614 -13.83134 -13.68220 -13.17230 -13.05105 -12.83755 -12.50921 -12.15103 -12.10576 -11.98006 -11.79949 -11.63880 -11.34697 -11.24548 -11.08063 -11.03989 -10.70937 -10.62818 -10.45051 -10.34210 -10.09821 -10.03401 -9.57966 -9.20053 -9.14297 -8.59882 -8.38617 -7.23835 -6.01181 -4.01951 0.88671 0.93286 3.28908 3.31745 3.38046 3.40508 3.79600 4.35677 4.41485 4.50856 4.59149 4.73496 4.97698 5.07813 5.17928 5.24688 5.32641 5.39187 5.47966 5.69103 5.70501 5.75462 5.80947 5.82784 5.85762 5.95572 5.98290 6.02250 6.03736 6.08836 6.12646 6.19574 6.24746 6.35975 6.43913 6.48318 6.54099 6.65335 6.73048 6.79016 6.89155 7.27188 7.37589 7.83231 8.14341 8.22890 8.56547 9.05244 9.61751 11.09408 Molecular weight = 311.18amu Principal moments of inertia in cm(-1) A = 0.008491 B = 0.004420 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.000049 B = 6333.092750 C = 9073.083468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.056 3.944 6 N -0.535 5.535 7 C 0.190 3.810 8 C -0.502 4.502 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.070 3.930 17 C -0.077 4.077 18 C -0.110 4.110 19 C -0.056 4.056 20 C -0.161 4.161 21 C 0.116 3.884 22 F -0.137 7.137 23 C -0.192 4.192 24 C 0.128 3.872 25 F -0.129 7.129 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.040 0.960 38 H -0.014 1.014 39 H 0.260 0.740 40 H 0.020 0.980 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -7.696 -13.061 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.148 4.148 5 C -0.072 4.072 6 N -0.259 5.259 7 C 0.065 3.935 8 C -0.541 4.541 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.059 4.059 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.074 4.074 20 C -0.180 4.180 21 C 0.096 3.904 22 F -0.115 7.115 23 C -0.212 4.212 24 C 0.109 3.891 25 F -0.108 7.108 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.004 0.996 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.982 -7.515 -12.898 15.450 hybrid contribution -0.680 -0.554 0.664 1.100 sum 3.302 -8.069 -12.235 15.023 Atomic orbital electron populations 1.21889 0.95702 1.01769 1.01193 1.21098 0.95631 0.95960 0.98728 1.21818 1.00813 0.96299 1.01285 1.21658 1.01311 0.94657 0.97184 1.22101 0.96829 0.94568 0.93732 1.62096 1.58624 1.02087 1.03123 1.19805 0.91973 0.96156 0.85561 1.21157 1.10408 1.31727 0.90806 0.91993 1.24973 0.95250 0.95360 0.99017 1.69947 1.24318 1.35812 1.23821 0.86550 0.79971 0.78815 0.82362 1.20684 1.21419 1.19907 1.21901 0.94507 0.90154 0.99303 1.20641 1.02273 0.87448 1.01097 1.20216 0.96463 0.98104 0.96429 1.20926 0.97606 0.92216 0.96669 1.21214 1.00585 0.95603 1.00557 1.17272 0.98112 0.76867 0.98135 1.91509 1.95451 1.28944 1.95610 1.20962 1.03802 0.92708 1.03741 1.17188 0.91999 0.88067 0.91865 1.91520 1.72040 1.76639 1.70560 0.92588 0.93491 0.92581 0.91865 0.92850 0.93354 0.92630 0.91015 0.91584 0.92549 0.95903 0.94249 0.99607 0.92996 0.96152 0.89841 0.89321 0.91173 0.83486 0.84127 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.95 37.16 0.33 -1.64 16 2 C -0.10 -1.29 2.92 -90.62 -0.26 -1.55 16 3 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 4 C -0.11 -1.84 4.65 -26.73 -0.12 -1.97 16 5 C 0.06 0.99 4.54 -3.83 -0.02 0.97 16 6 N -0.54 -11.02 4.36 -236.08 -1.03 -12.05 16 7 C 0.19 4.80 4.59 -4.98 -0.02 4.77 16 8 C -0.50 -13.70 8.51 -34.44 -0.29 -13.99 16 9 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 10 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 11 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 12 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.07 1.29 4.79 -3.83 -0.02 1.28 16 17 C -0.08 -1.13 5.15 -27.88 -0.14 -1.28 16 18 C -0.11 -1.47 5.14 -104.55 -0.54 -2.01 16 19 C -0.06 -0.66 9.68 -39.61 -0.38 -1.04 16 20 C -0.16 -1.73 10.02 -39.51 -0.40 -2.13 16 21 C 0.12 1.34 7.30 -39.42 -0.29 1.05 16 22 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 23 C -0.19 -2.26 10.01 -39.45 -0.39 -2.66 16 24 C 0.13 1.70 7.24 -39.43 -0.29 1.41 16 25 F -0.13 -1.83 16.57 2.25 0.04 -1.79 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.39 6.25 -51.93 -0.32 1.06 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.90 6.72 -51.93 -0.35 0.55 16 36 H 0.02 0.42 6.54 -51.93 -0.34 0.08 16 37 H 0.04 1.06 5.88 -51.93 -0.31 0.76 16 38 H -0.01 -0.38 8.00 -51.93 -0.42 -0.80 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 41 H 0.08 1.70 7.23 -51.93 -0.38 1.32 16 42 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 43 H 0.07 1.01 6.60 -51.93 -0.34 0.66 16 44 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 46 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -28.81 377.55 -9.54 -38.34 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.40 Total: -0.51 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -2.59 Total: -18.78 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.29 Total: -37.67 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.81 -9.54 -38.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116530513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.199 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds