Wall clock time and date at job start Fri Apr 10 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 C 1.53005 * 109.47343 * 120.00326 * 2 1 3 5 5 C 1.52997 * 109.47344 * 64.99442 * 4 2 1 6 6 N 1.46900 * 109.47119 * 179.97438 * 5 4 2 7 7 C 1.46898 * 110.99415 * 66.05304 * 6 5 4 8 8 C 1.50703 * 109.46917 * 199.29937 * 7 6 5 9 9 H 1.07999 * 120.00074 * 355.07067 * 8 7 6 10 10 C 1.37879 * 120.00036 * 175.06926 * 8 7 6 11 11 N 1.31506 * 120.00143 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99870 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47232 * 89.99735 * 12 10 8 14 14 H 1.48503 * 109.47130 * 209.99623 * 12 10 8 15 15 H 1.48500 * 109.46976 * 329.99976 * 12 10 8 16 16 C 1.46894 * 110.99797 * 190.00071 * 6 5 4 17 17 C 1.52998 * 109.47100 * 75.77631 * 16 6 5 18 18 C 1.50703 * 109.47523 * 174.85444 * 17 16 6 19 19 C 1.38234 * 119.98902 * 265.23346 * 18 17 16 20 20 C 1.38177 * 120.05378 * 180.22787 * 19 18 17 21 21 C 1.38502 * 120.02400 * 359.78907 * 20 19 18 22 22 F 1.35100 * 120.01200 * 180.02562 * 21 20 19 23 23 C 1.38399 * 119.97337 * 359.97438 * 21 20 19 24 24 C 1.38440 * 119.94719 * 359.97438 * 23 21 20 25 25 F 1.35102 * 120.01069 * 179.97438 * 24 23 21 26 26 H 1.08997 * 109.46949 * 299.99797 * 1 2 3 27 27 H 1.08993 * 109.46895 * 59.99952 * 1 2 3 28 28 H 1.09001 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47007 * 239.99872 * 2 1 3 30 30 H 1.09000 * 109.47059 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46989 * 299.99891 * 3 2 1 32 32 H 1.08997 * 109.47003 * 60.00236 * 3 2 1 33 33 H 1.09002 * 109.46690 * 305.00011 * 4 2 1 34 34 H 1.09004 * 109.47296 * 185.00281 * 4 2 1 35 35 H 1.09002 * 109.46763 * 60.00613 * 5 4 2 36 36 H 1.08996 * 109.47388 * 300.00947 * 5 4 2 37 37 H 1.09000 * 109.47522 * 319.29910 * 7 6 5 38 38 H 1.08995 * 109.47741 * 79.29961 * 7 6 5 39 39 H 0.96998 * 120.00607 * 180.02562 * 11 10 8 40 40 H 1.08995 * 109.47718 * 315.77159 * 16 6 5 41 41 H 1.09003 * 109.47274 * 195.77057 * 16 6 5 42 42 H 1.09000 * 109.47314 * 54.85535 * 17 16 6 43 43 H 1.09000 * 109.46966 * 294.85351 * 17 16 6 44 44 H 1.08008 * 119.96829 * 359.97289 * 19 18 17 45 45 H 1.08005 * 119.99003 * 179.76247 * 20 19 18 46 46 H 1.08001 * 120.02181 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1255 -2.8881 2.3871 7 6 1.4524 -2.3908 3.5944 8 6 2.2713 -2.7461 4.8085 9 1 3.1569 -3.3553 4.7032 10 6 1.8900 -2.2935 6.0539 11 7 0.8120 -1.5514 6.1821 12 14 2.9055 -2.7334 7.5588 13 1 3.9460 -1.6960 7.7743 14 1 2.0212 -2.8024 8.7498 15 1 3.5567 -4.0513 7.3485 16 6 1.9662 -4.3426 2.2569 17 6 3.0426 -4.8915 1.3183 18 6 2.9592 -6.3958 1.2834 19 6 3.7616 -7.1519 2.1173 20 6 3.6896 -8.5314 2.0830 21 6 2.8099 -9.1581 1.2160 22 9 2.7393 -10.5068 1.1831 23 6 2.0025 -8.4021 0.3841 24 6 2.0749 -7.0200 0.4201 25 9 1.2877 -6.2808 -0.3917 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1264 -0.6444 1.2952 35 1 2.0699 -2.6550 0.3003 36 1 0.5490 -2.2724 1.1420 37 1 1.3469 -1.3077 3.5315 38 1 0.4661 -2.8478 3.6749 39 1 0.5439 -1.2326 7.0581 40 1 0.9804 -4.5652 1.8488 41 1 2.0673 -4.8084 3.2372 42 1 4.0264 -4.5905 1.6782 43 1 2.8859 -4.4956 0.3149 44 1 4.4483 -6.6640 2.7932 45 1 4.3197 -9.1211 2.7323 46 1 1.3160 -8.8899 -0.2920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116530513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:44 Heat of formation + Delta-G solvation = -103.001653 kcal Electronic energy + Delta-G solvation = -25809.787198 eV Core-core repulsion = 21947.772086 eV Total energy + Delta-G solvation = -3862.015112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.176 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.03627 -50.00563 -40.12381 -39.06125 -36.81753 -34.87270 -33.75488 -31.80933 -30.43133 -29.74474 -28.00686 -27.50313 -24.73397 -24.41951 -24.14529 -22.42838 -21.38528 -20.69651 -19.21538 -18.55767 -18.23027 -17.12724 -16.99201 -16.77036 -16.43412 -16.30029 -16.22824 -16.11145 -15.68746 -15.35122 -15.11593 -14.78303 -14.45620 -14.42767 -14.17170 -13.85945 -13.66634 -13.45633 -13.24223 -13.07041 -12.83781 -12.66309 -12.59370 -12.48564 -12.38998 -12.31754 -12.22089 -11.93919 -11.66531 -11.51349 -11.45356 -11.20509 -11.12966 -10.54455 -10.06844 -9.60050 -8.98852 -8.15534 -6.24830 -0.07822 0.01419 1.43055 1.44337 1.54847 2.33931 2.43124 2.85372 3.13933 3.23359 3.41975 3.60450 3.76138 3.92711 3.96449 4.06634 4.10480 4.14320 4.25899 4.39134 4.43746 4.61845 4.68862 4.71120 4.75109 4.82550 4.86215 4.89087 4.91985 4.96819 5.00983 5.03049 5.06727 5.12355 5.20574 5.21611 5.29688 5.34077 5.36040 5.40339 5.51260 5.58968 5.71161 5.77686 6.12822 6.41984 6.66995 6.90653 7.44200 8.95150 Molecular weight = 311.18amu Principal moments of inertia in cm(-1) A = 0.008491 B = 0.004420 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.000049 B = 6333.092750 C = 9073.083468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.104 4.104 5 C 0.058 3.942 6 N -0.537 5.537 7 C 0.206 3.794 8 C -0.514 4.514 9 H 0.065 0.935 10 C 0.001 3.999 11 N -0.937 5.937 12 Si 0.965 3.035 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.260 1.260 16 C 0.074 3.926 17 C -0.062 4.062 18 C -0.125 4.125 19 C -0.057 4.057 20 C -0.152 4.152 21 C 0.113 3.887 22 F -0.136 7.136 23 C -0.191 4.191 24 C 0.114 3.886 25 F -0.139 7.139 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.013 0.987 37 H 0.016 0.984 38 H -0.050 1.050 39 H 0.262 0.738 40 H 0.011 0.989 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -8.841 -13.847 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.141 4.141 5 C -0.070 4.070 6 N -0.261 5.261 7 C 0.080 3.920 8 C -0.553 4.553 9 H 0.083 0.917 10 C -0.197 4.197 11 N -0.578 5.578 12 Si 0.790 3.210 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.184 1.184 16 C -0.054 4.054 17 C -0.099 4.099 18 C -0.126 4.126 19 C -0.075 4.075 20 C -0.171 4.171 21 C 0.093 3.907 22 F -0.115 7.115 23 C -0.211 4.211 24 C 0.094 3.906 25 F -0.117 7.117 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.031 0.969 37 H 0.034 0.966 38 H -0.032 1.032 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.179 0.821 45 H 0.184 0.816 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.723 -8.673 -13.710 17.203 hybrid contribution -1.254 -0.249 0.869 1.546 sum 4.469 -8.923 -12.841 16.263 Atomic orbital electron populations 1.21879 0.95652 1.01340 1.01582 1.21078 0.95633 0.96686 0.97465 1.21799 1.01183 0.95251 1.01748 1.21589 1.00914 0.94089 0.97556 1.22190 0.96399 0.95200 0.93238 1.62084 1.57792 1.03567 1.02636 1.19442 0.90449 0.94500 0.87609 1.21472 1.10508 1.31565 0.91707 0.91654 1.25887 0.96335 0.95139 1.02339 1.70090 1.26094 1.36994 1.24623 0.85445 0.78318 0.79163 0.78094 1.19964 1.21261 1.18419 1.21869 0.95701 0.88685 0.99154 1.20419 1.00760 0.88659 1.00087 1.20152 0.97662 0.97193 0.97615 1.21113 0.97397 0.92656 0.96295 1.21479 1.00109 0.95357 1.00113 1.17395 0.98179 0.76894 0.98194 1.91515 1.95447 1.28899 1.95602 1.21109 1.03929 0.92153 1.03883 1.17337 0.92317 0.88659 0.92265 1.91492 1.72387 1.76951 1.70898 0.94271 0.90997 0.93451 0.89956 0.92285 0.91147 0.93913 0.94568 0.91768 0.89969 0.96875 0.96581 1.03193 0.92920 0.97049 0.92060 0.88835 0.90630 0.82123 0.81551 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.95 71.98 0.64 -3.22 16 2 C -0.09 -2.35 2.92 -10.79 -0.03 -2.38 16 3 C -0.14 -3.30 9.19 71.98 0.66 -2.64 16 4 C -0.10 -3.53 4.65 30.59 0.14 -3.39 16 5 C 0.06 2.06 4.54 86.30 0.39 2.46 16 6 N -0.54 -22.72 4.36 -900.83 -3.93 -26.65 16 7 C 0.21 10.95 4.59 85.56 0.39 11.34 16 8 C -0.51 -28.72 8.51 25.60 0.22 -28.50 16 9 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 10 C 0.00 0.03 5.46 84.66 0.46 0.49 16 11 N -0.94 -56.58 13.29 21.45 0.28 -56.30 16 12 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 16 C 0.07 2.80 4.79 86.30 0.41 3.21 16 17 C -0.06 -1.77 5.15 29.85 0.15 -1.62 16 18 C -0.12 -3.18 5.14 -19.81 -0.10 -3.28 16 19 C -0.06 -1.21 9.68 22.25 0.22 -1.00 16 20 C -0.15 -2.88 10.02 22.32 0.22 -2.66 16 21 C 0.11 2.37 7.30 22.37 0.16 2.53 16 22 F -0.14 -2.88 17.27 44.97 0.78 -2.11 16 23 C -0.19 -4.20 10.01 22.36 0.22 -3.97 16 24 C 0.11 2.89 7.24 22.37 0.16 3.06 16 25 F -0.14 -3.85 16.57 44.97 0.74 -3.10 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.31 6.56 -2.39 -0.02 1.29 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.04 1.48 6.25 -2.39 -0.01 1.47 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.53 6.72 -2.39 -0.02 2.52 16 36 H 0.01 0.50 6.54 -2.39 -0.02 0.48 16 37 H 0.02 0.93 5.88 -2.39 -0.01 0.91 16 38 H -0.05 -2.92 8.00 -2.39 -0.02 -2.94 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.01 0.44 8.00 -2.39 -0.02 0.42 16 41 H 0.06 2.56 7.23 -2.39 -0.02 2.54 16 42 H 0.09 2.59 8.05 -2.39 -0.02 2.57 16 43 H 0.08 2.08 6.60 -2.39 -0.02 2.06 16 44 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -63.71 377.55 5.20 -58.52 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.95 Total: 13.36 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 4.33 Total: -29.56 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -3.64 Total: -82.95 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.52 Total: -5.21 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.71 5.20 -58.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116530513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.484 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds