Wall clock time and date at job start Fri Apr 10 2020 22:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47309 * 2 1 4 4 C 1.53008 * 109.47079 * 240.00002 * 2 1 3 5 5 O 1.45201 * 109.47091 * 119.99955 * 2 1 3 6 6 C 1.34232 * 116.99902 * 60.00529 * 5 2 1 7 7 O 1.20821 * 119.99794 * 359.97438 * 6 5 2 8 8 C 1.50695 * 119.99924 * 179.97438 * 6 5 2 9 9 C 1.52999 * 109.47381 * 179.97438 * 8 6 5 10 10 C 1.53038 * 109.46280 * 174.99923 * 9 8 6 11 11 C 1.53191 * 109.31261 * 181.38700 * 10 9 8 12 12 N 1.46926 * 108.77451 * 305.36750 * 11 10 9 13 13 C 1.34780 * 120.62707 * 233.58792 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 13 12 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47171 * 89.99544 * 20 18 16 22 22 H 1.48500 * 109.46632 * 209.99795 * 20 18 16 23 23 H 1.48494 * 109.47053 * 329.99231 * 20 18 16 24 24 C 1.46921 * 118.74177 * 53.86188 * 12 11 10 25 25 C 1.53041 * 109.45914 * 295.07285 * 9 8 6 26 26 H 1.08999 * 109.47338 * 300.00124 * 1 2 3 27 27 H 1.09002 * 109.47248 * 60.00080 * 1 2 3 28 28 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47443 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46900 * 300.00133 * 3 2 1 31 31 H 1.08999 * 109.47022 * 59.99683 * 3 2 1 32 32 H 1.08995 * 109.47030 * 300.00200 * 4 2 1 33 33 H 1.08994 * 109.46987 * 60.00060 * 4 2 1 34 34 H 1.09001 * 109.47117 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.46737 * 59.99586 * 8 6 5 36 36 H 1.09000 * 109.47094 * 300.00047 * 8 6 5 37 37 H 1.08999 * 109.45604 * 55.02630 * 9 8 6 38 38 H 1.09002 * 109.49670 * 61.43645 * 10 9 8 39 39 H 1.09002 * 109.52529 * 301.35851 * 10 9 8 40 40 H 1.09003 * 109.58572 * 185.57865 * 11 10 9 41 41 H 1.08992 * 109.70469 * 65.22435 * 11 10 9 42 42 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 43 43 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 44 44 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.58542 * 65.92391 * 24 12 11 46 46 H 1.08999 * 109.58977 * 186.35239 * 24 12 11 47 47 H 1.08999 * 109.49703 * 298.55892 * 25 9 8 48 48 H 1.09000 * 109.50029 * 58.65926 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9685 1.3378 7 8 0.9561 -2.5025 0.5082 8 6 2.1183 -2.7438 2.5435 9 6 1.5708 -4.1708 2.4745 10 6 2.1432 -4.9930 3.6313 11 6 1.6202 -6.4299 3.5391 12 7 0.1521 -6.3966 3.4909 13 6 -0.5801 -7.1166 4.3638 14 8 -0.0278 -7.8009 5.1990 15 6 -2.0852 -7.0724 4.3012 16 6 -2.6589 -7.9587 5.3766 17 1 -1.9996 -8.5002 6.0388 18 6 -4.0255 -8.0791 5.5144 19 7 -4.8283 -7.4201 4.7077 20 14 -4.7366 -9.1772 6.8478 21 1 -4.9308 -8.3859 8.0893 22 1 -6.0434 -9.7199 6.3972 23 1 -3.8011 -10.2986 7.1167 24 6 -0.5026 -5.5682 2.4692 25 6 0.0442 -4.1366 2.5770 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 1.7548 -2.2588 3.4496 36 1 3.2078 -2.7726 2.5589 37 1 1.8608 -4.6255 1.5273 38 1 1.8327 -4.5530 4.5790 39 1 3.2316 -4.9975 3.5716 40 1 1.9444 -6.9937 4.4138 41 1 2.0047 -6.9037 2.6360 42 1 -2.4252 -6.0481 4.4543 43 1 -2.4188 -7.4239 3.3249 44 1 -5.7898 -7.5050 4.8044 45 1 -0.2875 -5.9709 1.4795 46 1 -1.5795 -5.5632 2.6379 47 1 -0.2466 -3.7047 3.5346 48 1 -0.3615 -3.5315 1.7663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143196522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:47 Heat of formation + Delta-G solvation = -144.202010 kcal Electronic energy + Delta-G solvation = -26670.272158 eV Core-core repulsion = 22917.557979 eV Total energy + Delta-G solvation = -3752.714178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13911 -39.46084 -37.73685 -36.55995 -34.38673 -33.48287 -32.94055 -31.04634 -29.29974 -28.39352 -27.73672 -27.68825 -24.66054 -23.51568 -22.78008 -21.81148 -20.23851 -19.76789 -18.41373 -17.27912 -16.71244 -16.50739 -16.37851 -15.72634 -15.17492 -14.89815 -14.67213 -14.55904 -14.32125 -14.15505 -14.01812 -13.39908 -13.23854 -12.98082 -12.79715 -12.62435 -12.49307 -12.27909 -12.21972 -12.10722 -11.96871 -11.86057 -11.61625 -11.47276 -11.18521 -11.07729 -10.93993 -10.73497 -10.68015 -10.58203 -10.48825 -10.41926 -9.92589 -9.90903 -9.16687 -8.55869 -8.40630 -8.02235 -6.02561 -4.01793 2.07443 2.45845 3.36913 3.41932 3.49017 3.71687 3.73961 4.35300 4.42597 4.43254 4.50869 4.57436 4.61085 4.68699 4.94568 5.14484 5.21828 5.21976 5.27266 5.35379 5.36056 5.36782 5.41383 5.48081 5.52109 5.52888 5.56844 5.65650 5.67607 5.87980 5.93637 5.95175 5.99522 6.01766 6.08649 6.17310 6.18425 6.34518 6.47903 6.49091 7.10386 7.27423 7.36482 7.67959 7.99732 8.04629 8.42589 9.08853 9.26385 9.63068 11.09840 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.002702 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.380656 B =10360.402379 C =11194.345842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.355 6.355 6 C 0.464 3.536 7 O -0.496 6.496 8 C -0.112 4.112 9 C -0.074 4.074 10 C -0.127 4.127 11 C 0.112 3.888 12 N -0.629 5.629 13 C 0.517 3.483 14 O -0.548 6.548 15 C 0.007 3.993 16 C -0.507 4.507 17 H 0.074 0.926 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.272 1.272 24 C 0.114 3.886 25 C -0.135 4.135 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.261 0.739 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.686 18.034 -11.763 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.273 6.273 6 C 0.307 3.693 7 O -0.383 6.383 8 C -0.149 4.149 9 C -0.092 4.092 10 C -0.165 4.165 11 C -0.012 4.012 12 N -0.366 5.366 13 C 0.309 3.691 14 O -0.424 6.424 15 C -0.032 4.032 16 C -0.546 4.546 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.010 4.010 25 C -0.174 4.174 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.083 0.917 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.562 17.539 -11.609 26.164 hybrid contribution -0.514 -0.297 0.408 0.720 sum 15.048 17.243 -11.201 25.479 Atomic orbital electron populations 1.22497 0.93858 1.05017 1.02724 1.22165 0.94518 0.92184 0.83098 1.21852 1.02093 0.92793 1.03053 1.22485 1.01498 1.03322 0.96653 1.86557 1.69933 1.25735 1.45092 1.23728 0.77460 0.80406 0.87706 1.90566 1.34770 1.69748 1.43221 1.21565 1.03109 0.95447 0.94796 1.21001 0.96345 0.92058 0.99842 1.21957 0.99907 0.96165 0.98490 1.21366 0.81643 0.95689 1.02461 1.48411 1.05499 1.48145 1.34522 1.22032 0.91973 0.76693 0.78386 1.90513 1.73892 1.41134 1.36880 1.19236 0.84606 0.99536 0.99781 1.21195 0.91496 1.26562 1.15327 0.90746 1.25006 0.97022 0.96118 0.96478 1.69958 1.03494 1.42546 1.38100 0.86439 0.78152 0.80864 0.81697 1.20637 1.21288 1.19690 1.21701 0.98913 0.89312 0.91053 1.22197 0.94348 0.97882 1.02931 0.91965 0.91142 0.89528 0.91583 0.90428 0.91471 0.89627 0.91147 0.92165 0.87723 0.87877 0.90111 0.91259 0.91121 0.89265 0.92553 0.93537 0.93543 0.92941 0.92125 0.88612 0.91734 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.12 0.99 1.13 -90.62 -0.10 0.89 16 3 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 4 C -0.18 -1.50 8.37 37.16 0.31 -1.19 16 5 O -0.36 -3.54 9.89 -39.26 -0.39 -3.93 16 6 C 0.46 4.82 6.98 36.00 0.25 5.08 16 7 O -0.50 -6.07 9.47 -18.75 -0.18 -6.25 16 8 C -0.11 -0.97 5.29 -27.89 -0.15 -1.12 16 9 C -0.07 -0.79 1.80 -90.58 -0.16 -0.96 16 10 C -0.13 -1.43 5.36 -26.61 -0.14 -1.58 16 11 C 0.11 1.67 6.43 -3.71 -0.02 1.64 16 12 N -0.63 -11.48 2.97 -172.51 -0.51 -11.99 16 13 C 0.52 12.21 7.69 -10.98 -0.08 12.12 16 14 O -0.55 -14.61 14.87 5.56 0.08 -14.53 16 15 C 0.01 0.19 3.80 -29.03 -0.11 0.08 16 16 C -0.51 -15.00 8.92 -34.44 -0.31 -15.30 16 17 H 0.07 2.29 6.75 -52.49 -0.35 1.94 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 20 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.11 1.77 6.37 -3.49 -0.02 1.75 16 25 C -0.14 -1.76 5.13 -26.38 -0.14 -1.89 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.94 5.89 -51.93 -0.31 0.64 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.87 5.89 -51.93 -0.31 0.57 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.49 7.01 -51.93 -0.36 1.13 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.22 7.70 -51.93 -0.40 0.82 16 43 H 0.05 1.23 7.93 -51.93 -0.41 0.82 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.65 5.93 -51.93 -0.31 1.34 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.09 1.12 5.93 -51.93 -0.31 0.81 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -33.61 374.58 -7.99 -41.60 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.22 Total: -1.15 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.13 Total: -0.84 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.22 Total: -37.95 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.48 Total: -24.71 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.61 -7.99 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.599 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds