Wall clock time and date at job start Fri Apr 10 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47309 * 2 1 4 4 C 1.53008 * 109.47079 * 240.00002 * 2 1 3 5 5 O 1.45201 * 109.47091 * 119.99955 * 2 1 3 6 6 C 1.34232 * 116.99902 * 60.00529 * 5 2 1 7 7 O 1.20821 * 119.99794 * 359.97438 * 6 5 2 8 8 C 1.50695 * 119.99924 * 179.97438 * 6 5 2 9 9 C 1.52999 * 109.47381 * 179.97438 * 8 6 5 10 10 C 1.53038 * 109.46280 * 174.99923 * 9 8 6 11 11 C 1.53191 * 109.31261 * 181.38700 * 10 9 8 12 12 N 1.46926 * 108.77451 * 305.36750 * 11 10 9 13 13 C 1.34780 * 120.62707 * 233.58792 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 13 12 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47171 * 89.99544 * 20 18 16 22 22 H 1.48500 * 109.46632 * 209.99795 * 20 18 16 23 23 H 1.48494 * 109.47053 * 329.99231 * 20 18 16 24 24 C 1.46921 * 118.74177 * 53.86188 * 12 11 10 25 25 C 1.53041 * 109.45914 * 295.07285 * 9 8 6 26 26 H 1.08999 * 109.47338 * 300.00124 * 1 2 3 27 27 H 1.09002 * 109.47248 * 60.00080 * 1 2 3 28 28 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47443 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46900 * 300.00133 * 3 2 1 31 31 H 1.08999 * 109.47022 * 59.99683 * 3 2 1 32 32 H 1.08995 * 109.47030 * 300.00200 * 4 2 1 33 33 H 1.08994 * 109.46987 * 60.00060 * 4 2 1 34 34 H 1.09001 * 109.47117 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.46737 * 59.99586 * 8 6 5 36 36 H 1.09000 * 109.47094 * 300.00047 * 8 6 5 37 37 H 1.08999 * 109.45604 * 55.02630 * 9 8 6 38 38 H 1.09002 * 109.49670 * 61.43645 * 10 9 8 39 39 H 1.09002 * 109.52529 * 301.35851 * 10 9 8 40 40 H 1.09003 * 109.58572 * 185.57865 * 11 10 9 41 41 H 1.08992 * 109.70469 * 65.22435 * 11 10 9 42 42 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 43 43 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 44 44 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.58542 * 65.92391 * 24 12 11 46 46 H 1.08999 * 109.58977 * 186.35239 * 24 12 11 47 47 H 1.08999 * 109.49703 * 298.55892 * 25 9 8 48 48 H 1.09000 * 109.50029 * 58.65926 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9685 1.3378 7 8 0.9561 -2.5025 0.5082 8 6 2.1183 -2.7438 2.5435 9 6 1.5708 -4.1708 2.4745 10 6 2.1432 -4.9930 3.6313 11 6 1.6202 -6.4299 3.5391 12 7 0.1521 -6.3966 3.4909 13 6 -0.5801 -7.1166 4.3638 14 8 -0.0278 -7.8009 5.1990 15 6 -2.0852 -7.0724 4.3012 16 6 -2.6589 -7.9587 5.3766 17 1 -1.9996 -8.5002 6.0388 18 6 -4.0255 -8.0791 5.5144 19 7 -4.8283 -7.4201 4.7077 20 14 -4.7366 -9.1772 6.8478 21 1 -4.9308 -8.3859 8.0893 22 1 -6.0434 -9.7199 6.3972 23 1 -3.8011 -10.2986 7.1167 24 6 -0.5026 -5.5682 2.4692 25 6 0.0442 -4.1366 2.5770 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 1.7548 -2.2588 3.4496 36 1 3.2078 -2.7726 2.5589 37 1 1.8608 -4.6255 1.5273 38 1 1.8327 -4.5530 4.5790 39 1 3.2316 -4.9975 3.5716 40 1 1.9444 -6.9937 4.4138 41 1 2.0047 -6.9037 2.6360 42 1 -2.4252 -6.0481 4.4543 43 1 -2.4188 -7.4239 3.3249 44 1 -5.7898 -7.5050 4.8044 45 1 -0.2875 -5.9709 1.4795 46 1 -1.5795 -5.5632 2.6379 47 1 -0.2466 -3.7047 3.5346 48 1 -0.3615 -3.5315 1.7663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143196522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:46 Heat of formation + Delta-G solvation = -163.441658 kcal Electronic energy + Delta-G solvation = -26671.106451 eV Core-core repulsion = 22917.557979 eV Total energy + Delta-G solvation = -3753.548472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92297 -40.94843 -38.88751 -37.68580 -35.18160 -35.11565 -34.67956 -32.35037 -30.89148 -29.83935 -28.34821 -28.27043 -26.26990 -24.97443 -24.10351 -22.78970 -21.35789 -20.49719 -19.88018 -18.63860 -18.05537 -17.59035 -17.39835 -17.15668 -16.91008 -16.26706 -16.15163 -15.60403 -15.39371 -15.07085 -14.86291 -14.59930 -14.46004 -14.26824 -14.25764 -13.83651 -13.45638 -13.28016 -13.14823 -13.09047 -12.88780 -12.85453 -12.82021 -12.71616 -12.59688 -12.35323 -12.19358 -12.12532 -12.03925 -11.94726 -11.60246 -11.52977 -11.29981 -11.28133 -10.76213 -10.64245 -10.45149 -9.53703 -8.26415 -6.34395 1.31186 1.38596 1.39980 1.52686 1.76769 1.85721 2.19164 2.43703 3.08304 3.59052 3.72136 3.76237 3.78227 3.82953 3.91577 3.99235 4.16001 4.27383 4.33049 4.43455 4.51855 4.60226 4.62196 4.62617 4.71918 4.78127 4.78718 4.85434 4.89998 4.90411 4.95382 5.00325 5.03474 5.05428 5.11051 5.13036 5.20831 5.22724 5.28840 5.33289 5.45424 5.65240 5.69061 5.80418 6.05352 6.53699 6.79234 6.92161 7.32038 7.45945 8.85825 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.002702 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.380656 B =10360.402379 C =11194.345842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.359 6.359 6 C 0.461 3.539 7 O -0.519 6.519 8 C -0.105 4.105 9 C -0.066 4.066 10 C -0.116 4.116 11 C 0.104 3.896 12 N -0.618 5.618 13 C 0.516 3.484 14 O -0.586 6.586 15 C 0.015 3.985 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.966 3.034 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.109 3.891 25 C -0.127 4.127 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.268 0.732 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.165 19.457 -12.227 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.072 3.928 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.277 6.277 6 C 0.306 3.694 7 O -0.408 6.408 8 C -0.143 4.143 9 C -0.085 4.085 10 C -0.154 4.154 11 C -0.018 4.018 12 N -0.352 5.352 13 C 0.307 3.693 14 O -0.467 6.467 15 C -0.024 4.024 16 C -0.577 4.577 17 H 0.073 0.927 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.199 1.199 24 C -0.013 4.013 25 C -0.165 4.165 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.065 19.013 -12.114 28.275 hybrid contribution -0.977 -0.684 0.444 1.273 sum 16.088 18.329 -11.670 27.037 Atomic orbital electron populations 1.22473 0.94390 1.03623 1.03450 1.22413 0.94262 0.93388 0.82776 1.21868 1.02437 0.91159 1.03944 1.22443 1.01804 1.02118 0.97215 1.86553 1.69875 1.25522 1.45759 1.24052 0.76975 0.80590 0.87829 1.90573 1.35817 1.70205 1.44214 1.21543 1.04834 0.93520 0.94363 1.20900 0.94225 0.93698 0.99683 1.21895 1.02050 0.93180 0.98250 1.21684 0.78986 0.98511 1.02630 1.48331 1.07176 1.46499 1.33201 1.21493 0.91262 0.77375 0.79172 1.90482 1.74201 1.43183 1.38824 1.19014 0.86952 0.98216 0.98248 1.21396 0.92112 1.27742 1.16423 0.92718 1.25825 0.97119 0.97314 0.98665 1.70038 1.03994 1.43219 1.39179 0.85432 0.77605 0.78879 0.79042 1.19515 1.19743 1.19891 1.21862 0.97749 0.90890 0.90844 1.22112 0.96445 0.95436 1.02506 0.92096 0.89598 0.91896 0.91031 0.88705 0.91454 0.91849 0.89673 0.91571 0.86705 0.84824 0.89846 0.92000 0.87280 0.91199 0.90407 0.94501 0.94632 0.92351 0.90476 0.90893 0.92534 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.37 71.98 0.60 -2.43 16 2 C 0.11 1.65 1.13 -10.79 -0.01 1.64 16 3 C -0.14 -1.39 8.85 71.98 0.64 -0.75 16 4 C -0.18 -2.66 8.37 71.98 0.60 -2.05 16 5 O -0.36 -6.50 9.89 -51.44 -0.51 -7.01 16 6 C 0.46 8.79 6.98 71.23 0.50 9.28 16 7 O -0.52 -12.27 9.47 21.98 0.21 -12.06 16 8 C -0.11 -1.52 5.29 29.85 0.16 -1.36 16 9 C -0.07 -1.27 1.80 -10.77 -0.02 -1.29 16 10 C -0.12 -2.31 5.36 30.67 0.16 -2.14 16 11 C 0.10 2.98 6.43 86.36 0.56 3.53 16 12 N -0.62 -22.75 2.97 -818.07 -2.43 -25.18 16 13 C 0.52 25.24 7.69 87.66 0.67 25.91 16 14 O -0.59 -32.46 14.87 -3.03 -0.05 -32.50 16 15 C 0.02 0.82 3.80 29.10 0.11 0.93 16 16 C -0.54 -32.95 8.92 25.60 0.23 -32.72 16 17 H 0.05 3.51 6.75 -2.91 -0.02 3.49 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.92 -55.46 13.29 21.45 0.28 -55.17 16 20 Si 0.97 46.35 29.54 68.60 2.03 48.38 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 24 C 0.11 3.43 6.37 86.51 0.55 3.98 16 25 C -0.13 -3.21 5.13 30.82 0.16 -3.05 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.37 5.89 -2.39 -0.01 1.35 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.25 5.89 -2.39 -0.01 1.24 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.62 7.96 -2.39 -0.02 1.61 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 2.32 7.01 -2.39 -0.02 2.30 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 2.04 7.70 -2.39 -0.02 2.03 16 43 H 0.04 1.98 7.93 -2.39 -0.02 1.96 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.07 2.63 5.93 -2.39 -0.01 2.61 16 47 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.09 2.24 5.93 -2.39 -0.01 2.23 16 Total: -1.00 -74.92 374.58 5.84 -69.08 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.93 Total: 13.96 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.37 Total: 0.49 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.14 Total: -80.35 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.35 Total: -51.57 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.92 5.84 -69.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.364 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds