Wall clock time and date at job start Fri Apr 10 2020 22:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46939 * 2 1 4 4 C 1.53002 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47154 * 180.02562 * 4 3 2 6 6 C 1.37101 * 119.99262 * 270.00014 * 5 4 3 7 7 H 1.08004 * 119.99324 * 142.10696 * 6 5 4 8 8 C 1.38948 * 120.00522 * 322.09892 * 6 5 4 9 9 N 1.31409 * 120.00024 * 159.21280 * 8 6 5 10 10 Si 1.86806 * 119.99817 * 339.21179 * 8 6 5 11 11 H 1.48499 * 109.46869 * 95.07864 * 10 8 6 12 12 H 1.48490 * 109.47186 * 215.07817 * 10 8 6 13 13 H 1.48501 * 109.47064 * 335.08184 * 10 8 6 14 14 C 1.34769 * 120.00541 * 90.00048 * 5 4 3 15 15 O 1.21299 * 119.99777 * 4.76432 * 14 5 4 16 16 C 1.50695 * 120.00136 * 184.76777 * 14 5 4 17 17 H 1.08993 * 109.47136 * 51.39395 * 16 14 5 18 18 C 1.53000 * 109.46977 * 291.38797 * 16 14 5 19 19 C 1.53000 * 109.47516 * 300.00060 * 18 16 14 20 20 C 1.53000 * 109.46865 * 300.00394 * 19 18 16 21 21 C 1.52997 * 109.47679 * 59.99713 * 20 19 18 22 22 C 1.53000 * 109.47206 * 300.00078 * 21 20 19 23 23 H 1.09005 * 109.46732 * 300.00044 * 22 21 20 24 24 C 1.50697 * 109.47049 * 179.97438 * 22 21 20 25 25 O 1.20825 * 119.99615 * 239.99511 * 24 22 21 26 26 O 1.34222 * 120.00121 * 59.99785 * 24 22 21 27 27 C 1.45202 * 117.00139 * 179.97438 * 26 24 22 28 28 H 1.09004 * 109.46993 * 59.99688 * 1 2 3 29 29 H 1.08995 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47048 * 299.99932 * 1 2 3 31 31 H 1.08999 * 109.46824 * 240.00815 * 2 1 3 32 32 H 1.08990 * 109.47451 * 120.00412 * 2 1 3 33 33 H 1.09001 * 109.47208 * 60.00681 * 3 2 1 34 34 H 1.08996 * 109.47771 * 299.99872 * 3 2 1 35 35 H 1.08995 * 109.47258 * 60.00566 * 4 3 2 36 36 H 1.09004 * 109.46993 * 300.00312 * 4 3 2 37 37 H 0.97000 * 119.99648 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46848 * 60.00768 * 18 16 14 39 39 H 1.09005 * 109.46646 * 179.97438 * 18 16 14 40 40 H 1.09005 * 109.46732 * 59.99773 * 19 18 16 41 41 H 1.08990 * 109.46999 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.46818 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.46939 * 299.99253 * 20 19 18 44 44 H 1.09000 * 109.47152 * 179.97438 * 21 20 19 45 45 H 1.09006 * 109.46814 * 59.99604 * 21 20 19 46 46 H 1.08998 * 109.47059 * 59.99866 * 27 26 24 47 47 H 1.08996 * 109.47559 * 180.02562 * 27 26 24 48 48 H 1.09004 * 109.46990 * 300.00186 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2873 3.4703 -1.1859 7 1 4.0488 4.5190 -1.2843 8 6 4.8263 2.7764 -2.2623 9 7 4.6760 3.2381 -3.4834 10 14 5.7647 1.1871 -1.9735 11 1 4.8473 0.0323 -2.1465 12 1 6.8783 1.0853 -2.9505 13 1 6.3143 1.1805 -0.5940 14 6 4.2825 3.4588 1.1686 15 8 4.1632 2.8606 2.2171 16 6 4.6813 4.9121 1.1714 17 1 3.9785 5.4828 0.5645 18 6 6.0898 5.0555 0.5913 19 6 7.0763 4.2543 1.4432 20 6 7.0591 4.7851 2.8781 21 6 5.6507 4.6417 3.4582 22 6 4.6642 5.4428 2.6063 23 1 4.9527 6.4940 2.6083 24 6 3.2768 5.3010 3.1774 25 8 2.3928 4.8246 2.5055 26 8 3.0232 5.7039 4.4324 27 6 1.6644 5.5375 4.9163 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9337 0.9287 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 5.0520 2.7535 -4.2348 38 1 6.1019 4.6774 -0.4310 39 1 6.3780 6.1068 0.5929 40 1 6.7878 3.2032 1.4412 41 1 8.0795 4.3562 1.0297 42 1 7.7623 4.2147 3.4849 43 1 7.3476 5.8363 2.8801 44 1 5.6387 5.0195 4.4806 45 1 5.3623 3.5905 3.4562 46 1 1.3952 4.4817 4.8876 47 1 1.5963 5.9025 5.9410 48 1 0.9813 6.1039 4.2831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144801919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:49 Heat of formation + Delta-G solvation = -134.942086 kcal Electronic energy + Delta-G solvation = -28818.171620 eV Core-core repulsion = 25065.858983 eV Total energy + Delta-G solvation = -3752.312638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66455 -39.13006 -36.99663 -35.91758 -35.17048 -34.01519 -31.86976 -30.95652 -30.69303 -28.33058 -27.46681 -24.93140 -24.10697 -23.04032 -22.17887 -20.67025 -20.43655 -20.09873 -18.55580 -17.12946 -16.81038 -16.17464 -16.05406 -15.85101 -15.23598 -14.85292 -14.55049 -14.15757 -13.72386 -13.56848 -13.51646 -13.04582 -12.94816 -12.77535 -12.63519 -12.45767 -12.12270 -12.01978 -11.85965 -11.67261 -11.54922 -11.39409 -11.30313 -11.09138 -10.62497 -10.61094 -10.50690 -10.46068 -10.36986 -10.26032 -10.12975 -9.90933 -9.72464 -9.60080 -9.59301 -9.04994 -8.28477 -7.66803 -6.45480 -4.02701 2.74811 3.06384 3.09631 3.22514 3.30148 3.84424 4.14580 4.38418 4.94173 4.99509 5.12308 5.24863 5.27727 5.35140 5.42364 5.44640 5.52111 5.55917 5.58902 5.70069 5.72632 5.76731 5.87340 5.91061 5.97469 6.04201 6.17093 6.21820 6.23921 6.28996 6.30987 6.38522 6.45456 6.51228 6.55510 6.58129 6.65032 6.76844 6.80254 6.89008 6.94732 7.04297 7.07578 7.44996 8.13447 8.25308 8.30666 8.99959 9.42614 9.78696 10.65069 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.006857 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.451990 B = 4082.351431 C = 5670.502777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.124 4.124 4 C 0.105 3.895 5 N -0.465 5.465 6 C -0.336 4.336 7 H 0.103 0.897 8 C 0.068 3.932 9 N -0.861 5.861 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.261 1.261 14 C 0.509 3.491 15 O -0.594 6.594 16 C -0.074 4.074 17 H 0.093 0.907 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.128 4.128 22 C -0.055 4.055 23 H 0.100 0.900 24 C 0.470 3.530 25 O -0.491 6.491 26 O -0.366 6.366 27 C 0.037 3.963 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.274 0.726 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.060 0.940 47 H 0.094 0.906 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 2.525 10.447 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.018 4.018 5 N -0.184 5.184 6 C -0.463 4.463 7 H 0.121 0.879 8 C -0.139 4.139 9 N -0.497 5.497 10 Si 0.701 3.299 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.185 1.185 14 C 0.299 3.701 15 O -0.479 6.479 16 C -0.095 4.095 17 H 0.111 0.889 18 C -0.149 4.149 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.165 4.165 22 C -0.075 4.075 23 H 0.118 0.882 24 C 0.312 3.688 25 O -0.376 6.376 26 O -0.284 6.284 27 C -0.057 4.057 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.479 2.061 10.526 10.736 hybrid contribution 0.129 -0.787 -0.227 0.829 sum -0.350 1.274 10.299 10.384 Atomic orbital electron populations 1.21732 0.96233 1.00730 1.01757 1.21480 0.95558 0.97667 1.01389 1.21832 0.96108 0.95663 1.02700 1.21569 0.93955 0.85543 1.00698 1.43603 1.57449 1.11680 1.05677 1.19014 1.42570 0.97488 0.87255 0.87923 1.25278 0.96053 0.97872 0.94721 1.69762 1.41450 1.40310 0.98165 0.87006 0.80130 0.83682 0.79095 1.20290 1.21718 1.18496 1.19877 0.78349 0.88511 0.83373 1.90373 1.57314 1.68559 1.31690 1.20893 0.99470 0.95767 0.93358 0.88900 1.21568 0.91495 0.99718 1.02130 1.21567 0.98990 1.00724 0.94681 1.21496 0.96318 1.00482 0.96605 1.21915 0.93310 1.04362 0.96953 1.20895 0.89000 1.01786 0.95784 0.88224 1.23724 0.91739 0.73986 0.79341 1.90666 1.47466 1.39506 1.59931 1.86476 1.32744 1.77148 1.31984 1.23129 0.80950 1.02347 0.99241 0.92785 0.93373 0.92965 0.92411 0.92452 0.91882 0.91337 0.92152 0.91566 0.91606 0.87745 0.92274 0.91712 0.92317 0.92285 0.92520 0.92146 0.87056 0.92121 0.88782 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -2.09 5.93 -26.73 -0.16 -2.25 16 3 C -0.12 -2.58 5.54 -26.73 -0.15 -2.72 16 4 C 0.11 2.40 4.24 -4.04 -0.02 2.38 16 5 N -0.46 -11.15 2.17 -114.81 -0.25 -11.40 16 6 C -0.34 -8.52 7.11 -14.93 -0.11 -8.62 16 7 H 0.10 2.74 6.93 -52.48 -0.36 2.37 16 8 C 0.07 1.75 5.33 -17.47 -0.09 1.65 16 9 N -0.86 -23.31 13.96 55.50 0.77 -22.54 16 10 Si 0.87 20.39 24.96 -169.99 -4.24 16.14 16 11 H -0.28 -6.31 6.68 56.52 0.38 -5.93 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 14 C 0.51 11.61 4.31 -10.99 -0.05 11.57 16 15 O -0.59 -14.27 11.63 -12.91 -0.15 -14.42 16 16 C -0.07 -1.44 1.41 -91.77 -0.13 -1.57 16 17 H 0.09 1.91 7.32 -51.93 -0.38 1.53 16 18 C -0.11 -1.97 5.25 -26.73 -0.14 -2.12 16 19 C -0.12 -2.03 5.70 -26.73 -0.15 -2.18 16 20 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 21 C -0.13 -2.07 4.87 -26.73 -0.13 -2.20 16 22 C -0.06 -0.94 2.38 -91.77 -0.22 -1.15 16 23 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 24 C 0.47 8.75 6.36 36.00 0.23 8.97 16 25 O -0.49 -10.74 14.15 -25.07 -0.35 -11.10 16 26 O -0.37 -5.85 10.47 -39.24 -0.41 -6.26 16 27 C 0.04 0.48 10.56 101.05 1.07 1.54 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.06 1.40 3.19 -51.93 -0.17 1.24 16 36 H 0.07 1.51 7.36 -51.93 -0.38 1.12 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.10 2.13 5.97 -51.93 -0.31 1.82 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.27 7.22 -51.93 -0.37 0.89 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 45 H 0.11 2.17 5.21 -51.93 -0.27 1.90 16 46 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -29.63 364.80 -7.14 -36.77 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.17 Total: 7.54 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 0.16 Total: -0.23 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.52 Total: -33.94 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.92 Total: -31.78 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.24 Total: 16.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.63 -7.14 -36.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144801919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.173 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds