Wall clock time and date at job start Fri Apr 10 2020 22:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46939 * 2 1 4 4 C 1.53002 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47154 * 180.02562 * 4 3 2 6 6 C 1.37101 * 119.99262 * 270.00014 * 5 4 3 7 7 H 1.08004 * 119.99324 * 142.10696 * 6 5 4 8 8 C 1.38948 * 120.00522 * 322.09892 * 6 5 4 9 9 N 1.31409 * 120.00024 * 159.21280 * 8 6 5 10 10 Si 1.86806 * 119.99817 * 339.21179 * 8 6 5 11 11 H 1.48499 * 109.46869 * 95.07864 * 10 8 6 12 12 H 1.48490 * 109.47186 * 215.07817 * 10 8 6 13 13 H 1.48501 * 109.47064 * 335.08184 * 10 8 6 14 14 C 1.34769 * 120.00541 * 90.00048 * 5 4 3 15 15 O 1.21299 * 119.99777 * 4.76432 * 14 5 4 16 16 C 1.50695 * 120.00136 * 184.76777 * 14 5 4 17 17 H 1.08993 * 109.47136 * 51.39395 * 16 14 5 18 18 C 1.53000 * 109.46977 * 291.38797 * 16 14 5 19 19 C 1.53000 * 109.47516 * 300.00060 * 18 16 14 20 20 C 1.53000 * 109.46865 * 300.00394 * 19 18 16 21 21 C 1.52997 * 109.47679 * 59.99713 * 20 19 18 22 22 C 1.53000 * 109.47206 * 300.00078 * 21 20 19 23 23 H 1.09005 * 109.46732 * 300.00044 * 22 21 20 24 24 C 1.50697 * 109.47049 * 179.97438 * 22 21 20 25 25 O 1.20825 * 119.99615 * 239.99511 * 24 22 21 26 26 O 1.34222 * 120.00121 * 59.99785 * 24 22 21 27 27 C 1.45202 * 117.00139 * 179.97438 * 26 24 22 28 28 H 1.09004 * 109.46993 * 59.99688 * 1 2 3 29 29 H 1.08995 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47048 * 299.99932 * 1 2 3 31 31 H 1.08999 * 109.46824 * 240.00815 * 2 1 3 32 32 H 1.08990 * 109.47451 * 120.00412 * 2 1 3 33 33 H 1.09001 * 109.47208 * 60.00681 * 3 2 1 34 34 H 1.08996 * 109.47771 * 299.99872 * 3 2 1 35 35 H 1.08995 * 109.47258 * 60.00566 * 4 3 2 36 36 H 1.09004 * 109.46993 * 300.00312 * 4 3 2 37 37 H 0.97000 * 119.99648 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46848 * 60.00768 * 18 16 14 39 39 H 1.09005 * 109.46646 * 179.97438 * 18 16 14 40 40 H 1.09005 * 109.46732 * 59.99773 * 19 18 16 41 41 H 1.08990 * 109.46999 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.46818 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.46939 * 299.99253 * 20 19 18 44 44 H 1.09000 * 109.47152 * 179.97438 * 21 20 19 45 45 H 1.09006 * 109.46814 * 59.99604 * 21 20 19 46 46 H 1.08998 * 109.47059 * 59.99866 * 27 26 24 47 47 H 1.08996 * 109.47559 * 180.02562 * 27 26 24 48 48 H 1.09004 * 109.46990 * 300.00186 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2873 3.4703 -1.1859 7 1 4.0488 4.5190 -1.2843 8 6 4.8263 2.7764 -2.2623 9 7 4.6760 3.2381 -3.4834 10 14 5.7647 1.1871 -1.9735 11 1 4.8473 0.0323 -2.1465 12 1 6.8783 1.0853 -2.9505 13 1 6.3143 1.1805 -0.5940 14 6 4.2825 3.4588 1.1686 15 8 4.1632 2.8606 2.2171 16 6 4.6813 4.9121 1.1714 17 1 3.9785 5.4828 0.5645 18 6 6.0898 5.0555 0.5913 19 6 7.0763 4.2543 1.4432 20 6 7.0591 4.7851 2.8781 21 6 5.6507 4.6417 3.4582 22 6 4.6642 5.4428 2.6063 23 1 4.9527 6.4940 2.6083 24 6 3.2768 5.3010 3.1774 25 8 2.3928 4.8246 2.5055 26 8 3.0232 5.7039 4.4324 27 6 1.6644 5.5375 4.9163 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9337 0.9287 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 5.0520 2.7535 -4.2348 38 1 6.1019 4.6774 -0.4310 39 1 6.3780 6.1068 0.5929 40 1 6.7878 3.2032 1.4412 41 1 8.0795 4.3562 1.0297 42 1 7.7623 4.2147 3.4849 43 1 7.3476 5.8363 2.8801 44 1 5.6387 5.0195 4.4806 45 1 5.3623 3.5905 3.4562 46 1 1.3952 4.4817 4.8876 47 1 1.5963 5.9025 5.9410 48 1 0.9813 6.1039 4.2831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144801919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:48 Heat of formation + Delta-G solvation = -150.532289 kcal Electronic energy + Delta-G solvation = -28818.847662 eV Core-core repulsion = 25065.858983 eV Total energy + Delta-G solvation = -3752.988680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.17747 -40.70525 -38.54334 -37.33711 -36.90833 -35.66121 -33.82460 -32.31549 -32.10212 -29.89467 -28.59772 -26.87489 -25.60466 -24.46951 -23.61385 -22.18612 -21.76610 -21.65701 -20.36834 -18.64702 -18.44297 -17.80307 -17.57285 -17.36802 -16.95011 -16.38455 -16.09284 -15.76543 -15.30530 -14.97450 -14.83370 -14.66219 -14.55452 -14.21602 -14.15489 -13.98385 -13.58750 -13.44626 -13.38088 -13.09685 -13.00930 -12.88056 -12.83552 -12.75357 -12.20769 -12.13947 -12.02553 -11.86899 -11.80170 -11.75231 -11.65597 -11.49370 -11.48241 -11.08968 -10.98298 -10.85519 -10.09124 -9.57377 -8.47681 -6.05638 1.16773 1.29082 1.32165 1.40286 1.83696 2.03546 2.19265 2.62219 3.01909 3.60369 3.81184 3.85200 3.90612 4.00786 4.18437 4.24441 4.26514 4.28525 4.30102 4.33762 4.35462 4.38983 4.49103 4.55655 4.58970 4.66473 4.67711 4.71959 4.82729 4.86224 4.95434 5.00692 5.06908 5.17449 5.18857 5.27016 5.28457 5.30772 5.36289 5.40114 5.46567 5.52307 5.60627 5.67608 6.10331 6.35580 6.85746 7.01497 7.50538 7.90159 8.66551 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.006857 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.451990 B = 4082.351431 C = 5670.502777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.113 4.113 4 C 0.101 3.899 5 N -0.481 5.481 6 C -0.324 4.324 7 H 0.080 0.920 8 C 0.035 3.965 9 N -0.897 5.897 10 Si 0.918 3.082 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.506 3.494 15 O -0.606 6.606 16 C -0.074 4.074 17 H 0.075 0.925 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.055 4.055 23 H 0.140 0.860 24 C 0.468 3.532 25 O -0.536 6.536 26 O -0.361 6.361 27 C 0.031 3.969 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.278 0.722 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.025 0.975 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.138 0.862 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 3.017 12.294 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.152 4.152 4 C -0.022 4.022 5 N -0.201 5.201 6 C -0.452 4.452 7 H 0.098 0.902 8 C -0.169 4.169 9 N -0.534 5.534 10 Si 0.745 3.255 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.298 3.702 15 O -0.493 6.493 16 C -0.095 4.095 17 H 0.093 0.907 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.140 4.140 21 C -0.160 4.160 22 C -0.074 4.074 23 H 0.158 0.842 24 C 0.312 3.688 25 O -0.424 6.424 26 O -0.278 6.278 27 C -0.063 4.063 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.044 0.956 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.156 0.844 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.473 2.555 12.403 12.672 hybrid contribution -0.233 -0.887 -0.684 1.144 sum 0.241 1.669 11.719 11.840 Atomic orbital electron populations 1.21702 0.94172 1.02507 1.01645 1.21478 0.97386 0.94808 1.02076 1.21713 0.94731 0.98051 1.00701 1.21645 0.95236 0.85127 1.00181 1.43770 1.58426 1.12220 1.05718 1.18789 1.41938 0.96660 0.87794 0.90195 1.25683 0.96566 1.00192 0.94411 1.69817 1.42895 1.41867 0.98820 0.86281 0.79390 0.81400 0.78465 1.19245 1.21036 1.19315 1.20509 0.77214 0.89869 0.82654 1.90372 1.57505 1.69414 1.31977 1.20915 1.00071 0.93064 0.95449 0.90716 1.21526 0.90724 1.01964 1.00242 1.21562 0.99455 0.98222 0.96624 1.21479 0.95313 1.02681 0.94543 1.21825 0.94079 1.01832 0.98278 1.21019 0.88556 1.04034 0.93826 0.84201 1.24119 0.91944 0.72927 0.79792 1.90654 1.48907 1.41672 1.61181 1.86456 1.34479 1.76368 1.30449 1.23451 0.79442 1.01839 1.01523 0.92971 0.90617 0.93076 0.91895 0.91531 0.93843 0.93166 0.92535 0.91910 0.91242 0.91110 0.88639 0.95636 0.90259 0.90681 0.89118 0.89724 0.90873 0.93529 0.84424 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.29 16 2 C -0.12 -4.01 5.93 30.59 0.18 -3.82 16 3 C -0.11 -4.84 5.54 30.59 0.17 -4.67 16 4 C 0.10 4.73 4.24 86.38 0.37 5.09 16 5 N -0.48 -23.97 2.17 -635.53 -1.38 -25.35 16 6 C -0.32 -17.10 7.11 84.04 0.60 -16.50 16 7 H 0.08 4.51 6.93 -2.91 -0.02 4.49 16 8 C 0.04 1.87 5.33 84.93 0.45 2.32 16 9 N -0.90 -49.71 13.96 21.66 0.30 -49.40 16 10 Si 0.92 42.60 24.96 68.60 1.71 44.31 16 11 H -0.27 -11.84 6.68 99.48 0.66 -11.17 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 14 C 0.51 23.82 4.31 87.66 0.38 24.20 16 15 O -0.61 -30.00 11.63 14.55 0.17 -29.83 16 16 C -0.07 -2.90 1.41 -11.54 -0.02 -2.91 16 17 H 0.07 3.18 7.32 -2.39 -0.02 3.16 16 18 C -0.11 -3.71 5.25 30.59 0.16 -3.54 16 19 C -0.12 -3.84 5.70 30.59 0.17 -3.67 16 20 C -0.10 -2.58 5.92 30.59 0.18 -2.40 16 21 C -0.12 -3.68 4.87 30.59 0.15 -3.53 16 22 C -0.06 -1.78 2.38 -11.54 -0.03 -1.81 16 23 H 0.14 3.39 8.14 -2.38 -0.02 3.37 16 24 C 0.47 17.13 6.36 71.23 0.45 17.59 16 25 O -0.54 -24.02 14.15 28.01 0.40 -23.63 16 26 O -0.36 -10.88 10.47 -51.34 -0.54 -11.42 16 27 C 0.03 0.73 10.56 113.37 1.20 1.93 16 28 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.67 3.19 -2.39 -0.01 2.66 16 36 H 0.06 2.94 7.36 -2.38 -0.02 2.92 16 37 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.07 2.95 5.97 -2.39 -0.01 2.93 16 39 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.02 0.99 7.22 -2.38 -0.02 0.97 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.08 2.13 8.11 -2.39 -0.02 2.11 16 45 H 0.07 2.81 5.21 -2.38 -0.01 2.80 16 46 H 0.05 1.24 8.13 -2.39 -0.02 1.23 16 47 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 Total: -1.00 -67.55 364.80 6.68 -60.87 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.89 Total: 29.47 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.13 Total: 4.98 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.08 Total: -74.76 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: 0.03 Total: -64.88 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.71 Total: 44.31 kcal Total: -67.55 6.68 -60.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144801919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.660 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds