Wall clock time and date at job start Fri Apr 10 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 C 1.52996 * 109.47103 * 171.90328 * 3 2 1 5 5 C 1.53004 * 109.47294 * 184.99992 * 4 3 2 6 6 C 1.53005 * 109.47274 * 291.90521 * 3 2 1 7 7 N 1.46899 * 109.47072 * 66.94270 * 6 3 2 8 8 C 1.46893 * 111.00178 * 86.19884 * 7 6 3 9 9 C 1.50705 * 109.47115 * 285.48304 * 8 7 6 10 10 H 1.08000 * 119.99761 * 358.99121 * 9 8 7 11 11 C 1.37873 * 119.99968 * 178.99370 * 9 8 7 12 12 N 1.31518 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00009 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46990 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47203 * 119.99917 * 13 11 9 16 16 H 1.48497 * 109.47460 * 240.00168 * 13 11 9 17 17 C 1.46906 * 110.99595 * 210.15461 * 7 6 3 18 18 C 1.50692 * 109.47309 * 66.04565 * 17 7 6 19 19 C 1.38237 * 119.99015 * 260.22829 * 18 17 7 20 20 C 1.38176 * 120.05289 * 180.23421 * 19 18 17 21 21 C 1.38499 * 120.02426 * 359.78883 * 20 19 18 22 22 F 1.35107 * 120.01174 * 179.97438 * 21 20 19 23 23 C 1.38396 * 119.97750 * 359.97438 * 21 20 19 24 24 C 1.38442 * 119.94815 * 359.97438 * 23 21 20 25 25 F 1.35097 * 120.01296 * 179.97438 * 24 23 21 26 26 H 1.09004 * 109.46956 * 178.25157 * 1 2 3 27 27 H 1.09005 * 109.47066 * 298.24665 * 1 2 3 28 28 H 1.08997 * 109.47552 * 58.24935 * 1 2 3 29 29 H 1.09010 * 109.46897 * 240.00140 * 2 1 3 30 30 H 1.09000 * 109.47065 * 120.00481 * 2 1 3 31 31 H 1.09003 * 109.47001 * 51.90437 * 3 2 1 32 32 H 1.08994 * 109.47581 * 305.00258 * 4 3 2 33 33 H 1.09000 * 109.47176 * 65.00163 * 4 3 2 34 34 H 1.08993 * 109.47263 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47074 * 300.00060 * 5 4 3 36 36 H 1.09000 * 109.46869 * 59.99983 * 5 4 3 37 37 H 1.09007 * 109.46764 * 306.94334 * 6 3 2 38 38 H 1.08999 * 109.47132 * 186.94269 * 6 3 2 39 39 H 1.09000 * 109.46974 * 45.48130 * 8 7 6 40 40 H 1.08994 * 109.47408 * 165.48236 * 8 7 6 41 41 H 0.97000 * 119.99571 * 179.97438 * 12 11 9 42 42 H 1.09002 * 109.46970 * 306.04329 * 17 7 6 43 43 H 1.09003 * 109.46855 * 186.04618 * 17 7 6 44 44 H 1.08002 * 119.96984 * 359.97438 * 19 18 17 45 45 H 1.08000 * 119.98984 * 179.77239 * 20 19 18 46 46 H 1.07996 * 120.02562 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5564 1.4473 0.2032 5 6 4.0497 2.8902 0.3279 6 6 1.7026 2.1028 -1.3384 7 7 0.2458 2.2485 -1.4590 8 6 -0.2123 3.4950 -0.8312 9 6 -0.1759 3.3453 0.6679 10 1 0.1390 2.4115 1.1098 11 6 -0.5447 4.4003 1.4752 12 7 -0.9278 5.5376 0.9370 13 14 -0.5003 4.2146 3.3334 14 1 -0.0363 2.8480 3.6833 15 1 0.4330 5.2162 3.9089 16 1 -1.8617 4.4320 3.8853 17 6 -0.1752 2.1813 -2.8649 18 6 0.0928 0.7999 -3.4040 19 6 1.2185 0.5638 -4.1708 20 6 1.4630 -0.7013 -4.6699 21 6 0.5825 -1.7354 -4.3987 22 9 0.8215 -2.9721 -4.8873 23 6 -0.5423 -1.5014 -3.6271 24 6 -0.7857 -0.2337 -3.1267 25 9 -1.8836 -0.0037 -2.3737 26 1 -0.3633 -1.0272 -0.0314 27 1 -0.3633 0.4864 0.9053 28 1 -0.3634 0.5408 -0.8738 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.5633 1.9964 0.8088 32 1 3.8029 0.8991 1.1124 33 1 4.0388 0.9709 -0.6503 34 1 5.1301 2.8936 0.4722 35 1 3.8033 3.4383 -0.5814 36 1 3.5673 3.3666 1.1814 37 1 2.0745 1.4820 -2.1537 38 1 2.1713 3.0856 -1.3870 39 1 0.4414 4.3142 -1.1305 40 1 -1.2323 3.7090 -1.1503 41 1 -1.1876 6.2797 1.5051 42 1 0.3843 2.9135 -3.4471 43 1 -1.2410 2.3985 -2.9356 44 1 1.9052 1.3698 -4.3835 45 1 2.3408 -0.8837 -5.2719 46 1 -1.2292 -2.3073 -3.4147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167559010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:51 Heat of formation + Delta-G solvation = -67.788321 kcal Electronic energy + Delta-G solvation = -27805.769090 eV Core-core repulsion = 23945.280942 eV Total energy + Delta-G solvation = -3860.488147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.176 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.01699 -48.72855 -39.29337 -37.66349 -34.81113 -32.74116 -31.38998 -31.05507 -30.63250 -27.45291 -26.98612 -25.00914 -23.64507 -23.14508 -21.68843 -21.26473 -20.41309 -19.28980 -18.09727 -17.12293 -16.47435 -16.05855 -15.79510 -15.46167 -15.21733 -14.97992 -14.65312 -14.33121 -14.20503 -14.05586 -13.75540 -13.33287 -13.05627 -12.92116 -12.39762 -12.34713 -11.93337 -11.89866 -11.82059 -11.65329 -11.35708 -11.25900 -11.12297 -10.90758 -10.81202 -10.63290 -10.47000 -10.43350 -10.12620 -9.83668 -9.68853 -9.40193 -9.03712 -8.74927 -8.52953 -8.36674 -7.09839 -6.01942 -4.01136 0.99466 1.05284 3.30555 3.37666 3.39304 3.43543 3.92897 4.42352 4.50144 4.59028 4.77829 4.81364 4.96364 5.19066 5.33951 5.40923 5.49754 5.63359 5.70558 5.78016 5.82112 5.89097 5.96980 6.04142 6.07797 6.11511 6.11809 6.18334 6.25235 6.32991 6.36135 6.46513 6.54387 6.67522 6.73939 6.76798 6.81497 6.96039 7.05123 7.19803 7.25385 7.32810 7.72661 7.91567 8.07096 8.15795 8.50616 9.06981 9.62144 11.08770 Molecular weight = 311.18amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.004836 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.941669 B = 5788.515599 C = 6351.206939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.102 4.102 4 C -0.115 4.115 5 C -0.150 4.150 6 C 0.070 3.930 7 N -0.519 5.519 8 C 0.193 3.807 9 C -0.502 4.502 10 H 0.081 0.919 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.888 3.112 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.086 3.914 18 C -0.108 4.108 19 C -0.060 4.060 20 C -0.167 4.167 21 C 0.119 3.881 22 F -0.138 7.138 23 C -0.197 4.197 24 C 0.157 3.843 25 F -0.118 7.118 26 H 0.014 0.986 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.037 0.963 39 H -0.005 1.005 40 H 0.027 0.973 41 H 0.259 0.741 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 -10.658 -10.064 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.135 4.135 3 C -0.120 4.120 4 C -0.153 4.153 5 C -0.208 4.208 6 C -0.058 4.058 7 N -0.243 5.243 8 C 0.068 3.932 9 C -0.540 4.540 10 H 0.099 0.901 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.716 3.284 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.042 4.042 18 C -0.110 4.110 19 C -0.079 4.079 20 C -0.186 4.186 21 C 0.099 3.901 22 F -0.117 7.117 23 C -0.216 4.216 24 C 0.137 3.863 25 F -0.096 7.096 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.013 0.987 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.333 -10.878 -9.748 15.550 hybrid contribution 0.252 0.403 0.746 0.884 sum 5.586 -10.474 -9.003 14.898 Atomic orbital electron populations 1.22390 0.94867 0.98757 1.06676 1.21323 0.97456 0.95824 0.98860 1.21634 0.93460 0.96599 1.00309 1.21531 0.96808 0.96571 1.00398 1.21791 0.99256 0.97153 1.02563 1.22112 0.88312 0.98591 0.96738 1.62324 1.11846 1.40205 1.09938 1.19850 0.95257 0.83324 0.94768 1.21449 1.43286 0.98888 0.90360 0.90123 1.24966 0.95681 0.95353 0.98531 1.69965 1.45752 1.03157 1.35020 0.86589 0.77626 0.78185 0.85990 1.19542 1.21236 1.21128 1.21024 1.01774 0.89936 0.91457 1.20166 0.94884 0.96760 0.99165 1.20805 0.95641 0.96369 0.95062 1.21080 1.00775 0.92536 1.04247 1.17246 0.95434 0.80154 0.97251 1.91502 1.94247 1.39942 1.85974 1.20994 0.99886 0.97658 1.03108 1.17058 0.84937 0.92494 0.91845 1.91572 1.50226 1.94942 1.72838 0.96669 0.92968 0.86546 0.94385 0.94422 0.86807 0.92809 0.93385 0.94057 0.92643 0.92240 0.93310 0.94503 0.98681 0.95489 0.93135 0.94189 0.89770 0.84357 0.84492 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.79 37.16 0.33 -2.87 16 2 C -0.10 -1.67 5.38 -26.73 -0.14 -1.81 16 3 C -0.10 -1.81 1.87 -90.62 -0.17 -1.98 16 4 C -0.11 -1.76 5.40 -26.73 -0.14 -1.90 16 5 C -0.15 -2.30 9.68 37.16 0.36 -1.94 16 6 C 0.07 1.24 4.11 -3.82 -0.02 1.22 16 7 N -0.52 -9.94 1.27 -237.52 -0.30 -10.24 16 8 C 0.19 4.59 4.73 -4.98 -0.02 4.57 16 9 C -0.50 -12.96 8.01 -34.44 -0.28 -13.23 16 10 H 0.08 2.05 3.55 -52.49 -0.19 1.87 16 11 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 12 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.09 1.40 4.69 -4.98 -0.02 1.37 16 18 C -0.11 -1.52 4.44 -104.55 -0.46 -1.99 16 19 C -0.06 -0.70 8.11 -39.60 -0.32 -1.02 16 20 C -0.17 -1.82 10.02 -39.51 -0.40 -2.21 16 21 C 0.12 1.43 7.30 -39.43 -0.29 1.14 16 22 F -0.14 -1.67 17.27 2.25 0.04 -1.64 16 23 C -0.20 -2.51 10.01 -39.45 -0.39 -2.90 16 24 C 0.16 2.27 6.02 -39.43 -0.24 2.04 16 25 F -0.12 -1.94 15.33 2.25 0.03 -1.90 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 1.09 6.87 -51.93 -0.36 0.73 16 28 H 0.12 2.21 1.86 -51.93 -0.10 2.12 16 29 H 0.04 0.62 8.10 -51.92 -0.42 0.20 16 30 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.11 2.43 4.44 -51.93 -0.23 2.20 16 32 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.86 6.42 -51.93 -0.33 0.53 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.76 5.45 -51.93 -0.28 0.47 16 38 H 0.04 0.69 5.67 -51.93 -0.29 0.40 16 39 H 0.00 -0.12 7.67 -51.93 -0.40 -0.52 16 40 H 0.03 0.70 7.76 -51.93 -0.40 0.30 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.04 0.60 7.98 -51.93 -0.41 0.19 16 43 H 0.08 1.43 7.64 -51.93 -0.40 1.03 16 44 H 0.14 1.36 7.95 -52.49 -0.42 0.94 16 45 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -27.47 356.66 -8.19 -35.66 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.75 Total: 1.73 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -2.31 Total: -20.09 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.44 Total: -35.23 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.07 Total: -3.54 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.47 -8.19 -35.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167559010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.127 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds