Wall clock time and date at job start Fri Apr 10 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 C 1.52996 * 109.47103 * 171.90328 * 3 2 1 5 5 C 1.53004 * 109.47294 * 184.99992 * 4 3 2 6 6 C 1.53005 * 109.47274 * 291.90521 * 3 2 1 7 7 N 1.46899 * 109.47072 * 66.94270 * 6 3 2 8 8 C 1.46893 * 111.00178 * 86.19884 * 7 6 3 9 9 C 1.50705 * 109.47115 * 285.48304 * 8 7 6 10 10 H 1.08000 * 119.99761 * 358.99121 * 9 8 7 11 11 C 1.37873 * 119.99968 * 178.99370 * 9 8 7 12 12 N 1.31518 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00009 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46990 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47203 * 119.99917 * 13 11 9 16 16 H 1.48497 * 109.47460 * 240.00168 * 13 11 9 17 17 C 1.46906 * 110.99595 * 210.15461 * 7 6 3 18 18 C 1.50692 * 109.47309 * 66.04565 * 17 7 6 19 19 C 1.38237 * 119.99015 * 260.22829 * 18 17 7 20 20 C 1.38176 * 120.05289 * 180.23421 * 19 18 17 21 21 C 1.38499 * 120.02426 * 359.78883 * 20 19 18 22 22 F 1.35107 * 120.01174 * 179.97438 * 21 20 19 23 23 C 1.38396 * 119.97750 * 359.97438 * 21 20 19 24 24 C 1.38442 * 119.94815 * 359.97438 * 23 21 20 25 25 F 1.35097 * 120.01296 * 179.97438 * 24 23 21 26 26 H 1.09004 * 109.46956 * 178.25157 * 1 2 3 27 27 H 1.09005 * 109.47066 * 298.24665 * 1 2 3 28 28 H 1.08997 * 109.47552 * 58.24935 * 1 2 3 29 29 H 1.09010 * 109.46897 * 240.00140 * 2 1 3 30 30 H 1.09000 * 109.47065 * 120.00481 * 2 1 3 31 31 H 1.09003 * 109.47001 * 51.90437 * 3 2 1 32 32 H 1.08994 * 109.47581 * 305.00258 * 4 3 2 33 33 H 1.09000 * 109.47176 * 65.00163 * 4 3 2 34 34 H 1.08993 * 109.47263 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47074 * 300.00060 * 5 4 3 36 36 H 1.09000 * 109.46869 * 59.99983 * 5 4 3 37 37 H 1.09007 * 109.46764 * 306.94334 * 6 3 2 38 38 H 1.08999 * 109.47132 * 186.94269 * 6 3 2 39 39 H 1.09000 * 109.46974 * 45.48130 * 8 7 6 40 40 H 1.08994 * 109.47408 * 165.48236 * 8 7 6 41 41 H 0.97000 * 119.99571 * 179.97438 * 12 11 9 42 42 H 1.09002 * 109.46970 * 306.04329 * 17 7 6 43 43 H 1.09003 * 109.46855 * 186.04618 * 17 7 6 44 44 H 1.08002 * 119.96984 * 359.97438 * 19 18 17 45 45 H 1.08000 * 119.98984 * 179.77239 * 20 19 18 46 46 H 1.07996 * 120.02562 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5564 1.4473 0.2032 5 6 4.0497 2.8902 0.3279 6 6 1.7026 2.1028 -1.3384 7 7 0.2458 2.2485 -1.4590 8 6 -0.2123 3.4950 -0.8312 9 6 -0.1759 3.3453 0.6679 10 1 0.1390 2.4115 1.1098 11 6 -0.5447 4.4003 1.4752 12 7 -0.9278 5.5376 0.9370 13 14 -0.5003 4.2146 3.3334 14 1 -0.0363 2.8480 3.6833 15 1 0.4330 5.2162 3.9089 16 1 -1.8617 4.4320 3.8853 17 6 -0.1752 2.1813 -2.8649 18 6 0.0928 0.7999 -3.4040 19 6 1.2185 0.5638 -4.1708 20 6 1.4630 -0.7013 -4.6699 21 6 0.5825 -1.7354 -4.3987 22 9 0.8215 -2.9721 -4.8873 23 6 -0.5423 -1.5014 -3.6271 24 6 -0.7857 -0.2337 -3.1267 25 9 -1.8836 -0.0037 -2.3737 26 1 -0.3633 -1.0272 -0.0314 27 1 -0.3633 0.4864 0.9053 28 1 -0.3634 0.5408 -0.8738 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.5633 1.9964 0.8088 32 1 3.8029 0.8991 1.1124 33 1 4.0388 0.9709 -0.6503 34 1 5.1301 2.8936 0.4722 35 1 3.8033 3.4383 -0.5814 36 1 3.5673 3.3666 1.1814 37 1 2.0745 1.4820 -2.1537 38 1 2.1713 3.0856 -1.3870 39 1 0.4414 4.3142 -1.1305 40 1 -1.2323 3.7090 -1.1503 41 1 -1.1876 6.2797 1.5051 42 1 0.3843 2.9135 -3.4471 43 1 -1.2410 2.3985 -2.9356 44 1 1.9052 1.3698 -4.3835 45 1 2.3408 -0.8837 -5.2719 46 1 -1.2292 -2.3073 -3.4147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167559010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:51 Heat of formation + Delta-G solvation = -78.727058 kcal Electronic energy + Delta-G solvation = -27806.243429 eV Core-core repulsion = 23945.280942 eV Total energy + Delta-G solvation = -3860.962487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.176 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.95286 -49.89592 -40.47540 -38.96325 -36.22913 -34.68404 -32.71576 -32.32081 -31.65996 -29.18934 -28.42554 -26.36071 -25.27723 -24.12497 -23.07304 -22.59284 -21.83273 -20.75179 -19.11390 -18.38736 -18.11110 -17.29462 -16.86101 -16.64732 -16.59261 -16.30956 -16.17760 -15.62407 -15.55127 -15.32726 -14.73942 -14.65075 -14.52464 -14.36453 -13.97407 -13.72977 -13.30433 -13.23439 -13.14439 -13.05586 -12.89806 -12.68295 -12.52246 -12.37599 -12.32687 -12.21459 -12.11463 -11.94822 -11.53318 -11.32785 -11.18045 -11.00700 -10.59195 -10.40449 -9.97966 -9.56445 -8.67952 -8.10810 -6.15304 -0.00709 0.09462 1.38626 1.41677 1.52359 2.37029 2.46030 2.94884 3.22010 3.38767 3.51967 3.66166 3.70727 3.97985 4.07735 4.15795 4.20581 4.39611 4.47573 4.52434 4.64477 4.71960 4.78039 4.80326 4.88993 4.91289 4.94767 4.99687 5.03496 5.09864 5.10636 5.20267 5.20569 5.28988 5.34643 5.35890 5.39561 5.44076 5.53221 5.63233 5.71208 5.83544 5.99118 6.18974 6.24187 6.46531 6.68250 7.02122 7.51859 8.99597 Molecular weight = 311.18amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.004836 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.941669 B = 5788.515599 C = 6351.206939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.102 4.102 4 C -0.109 4.109 5 C -0.149 4.149 6 C 0.074 3.926 7 N -0.521 5.521 8 C 0.210 3.790 9 C -0.499 4.499 10 H 0.085 0.915 11 C 0.003 3.997 12 N -0.936 5.936 13 Si 0.946 3.054 14 H -0.264 1.264 15 H -0.282 1.282 16 H -0.285 1.285 17 C 0.086 3.914 18 C -0.119 4.119 19 C -0.054 4.054 20 C -0.150 4.150 21 C 0.119 3.881 22 F -0.137 7.137 23 C -0.197 4.197 24 C 0.135 3.865 25 F -0.138 7.138 26 H 0.023 0.977 27 H 0.020 0.980 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.023 0.977 39 H -0.031 1.031 40 H -0.003 1.003 41 H 0.258 0.742 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.163 0.837 45 H 0.170 0.830 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -12.819 -11.152 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.147 4.147 5 C -0.206 4.206 6 C -0.053 4.053 7 N -0.244 5.244 8 C 0.084 3.916 9 C -0.537 4.537 10 H 0.103 0.897 11 C -0.194 4.194 12 N -0.579 5.579 13 Si 0.772 3.228 14 H -0.188 1.188 15 H -0.208 1.208 16 H -0.212 1.212 17 C -0.041 4.041 18 C -0.120 4.120 19 C -0.072 4.072 20 C -0.169 4.169 21 C 0.099 3.901 22 F -0.115 7.115 23 C -0.217 4.217 24 C 0.115 3.885 25 F -0.117 7.117 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.132 0.868 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.041 0.959 39 H -0.013 1.013 40 H 0.015 0.985 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.180 0.820 45 H 0.188 0.812 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.767 -13.064 -10.843 18.670 hybrid contribution -0.496 0.996 0.974 1.479 sum 7.271 -12.069 -9.869 17.202 Atomic orbital electron populations 1.22355 0.96468 0.98844 1.04932 1.21258 0.95900 0.95517 1.00039 1.21538 0.95285 0.96427 0.98790 1.21484 0.94674 0.96673 1.01847 1.21767 1.00695 0.97034 1.01092 1.22135 0.86925 0.98443 0.97845 1.62208 1.13174 1.37043 1.11985 1.19456 0.93095 0.84713 0.94343 1.21817 1.41603 0.98743 0.91524 0.89720 1.25715 0.95845 0.95263 1.02573 1.70086 1.47449 1.03954 1.36368 0.85675 0.77432 0.78330 0.81335 1.18846 1.20845 1.21173 1.20982 1.00940 0.92253 0.89963 1.19991 0.96317 0.95073 1.00647 1.21036 0.94767 0.97524 0.93893 1.21390 1.01058 0.91372 1.03082 1.17363 0.95311 0.80531 0.96883 1.91515 1.94172 1.39964 1.85867 1.21086 1.00492 0.97153 1.02922 1.17284 0.84912 0.93498 0.92802 1.91520 1.51360 1.95147 1.73637 0.95788 0.96057 0.86790 0.92583 0.93634 0.90811 0.92011 0.90912 0.91484 0.93328 0.94810 0.90328 0.95866 1.01313 0.98481 0.93270 0.92889 0.91555 0.81987 0.81233 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.29 8.79 71.98 0.63 -5.66 16 2 C -0.09 -2.89 5.38 30.59 0.16 -2.73 16 3 C -0.10 -3.50 1.87 -10.79 -0.02 -3.52 16 4 C -0.11 -3.03 5.40 30.59 0.17 -2.87 16 5 C -0.15 -4.31 9.68 71.98 0.70 -3.62 16 6 C 0.07 2.52 4.11 86.30 0.35 2.88 16 7 N -0.52 -20.23 1.27 -905.36 -1.15 -21.37 16 8 C 0.21 10.49 4.73 85.56 0.40 10.90 16 9 C -0.50 -26.72 8.01 25.60 0.21 -26.51 16 10 H 0.09 4.45 3.55 -2.91 -0.01 4.44 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.94 -55.64 13.29 21.45 0.28 -55.35 16 13 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 14 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 17 C 0.09 2.81 4.69 85.55 0.40 3.21 16 18 C -0.12 -3.15 4.44 -19.81 -0.09 -3.24 16 19 C -0.05 -1.05 8.11 22.25 0.18 -0.87 16 20 C -0.15 -2.57 10.02 22.32 0.22 -2.35 16 21 C 0.12 2.45 7.30 22.37 0.16 2.61 16 22 F -0.14 -2.84 17.27 44.97 0.78 -2.06 16 23 C -0.20 -4.62 10.01 22.36 0.22 -4.39 16 24 C 0.13 3.78 6.02 22.37 0.13 3.92 16 25 F -0.14 -4.65 15.33 44.97 0.69 -3.96 16 26 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.02 0.88 6.87 -2.38 -0.02 0.87 16 28 H 0.11 4.34 1.86 -2.39 0.00 4.34 16 29 H 0.06 1.62 8.10 -2.38 -0.02 1.60 16 30 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 31 H 0.07 3.18 4.44 -2.39 -0.01 3.17 16 32 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.46 6.42 -2.39 -0.02 1.44 16 36 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 2.20 5.45 -2.38 -0.01 2.18 16 38 H 0.02 0.86 5.67 -2.39 -0.01 0.85 16 39 H -0.03 -1.68 7.67 -2.39 -0.02 -1.69 16 40 H 0.00 -0.16 7.76 -2.39 -0.02 -0.18 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.05 1.57 7.98 -2.39 -0.02 1.55 16 43 H 0.07 2.36 7.64 -2.39 -0.02 2.35 16 44 H 0.16 2.42 7.95 -2.91 -0.02 2.39 16 45 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -61.76 356.66 7.92 -53.84 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.99 Total: 14.01 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 4.31 Total: -31.60 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -0.86 Total: -76.73 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.47 Total: -6.02 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.76 7.92 -53.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167559010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.890 kcal (2) G-P(sol) polarization free energy of solvation -61.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds