Wall clock time and date at job start Fri Apr 10 2020 22:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34237 * 117.00171 * 2 1 4 4 O 1.20820 * 119.99606 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.50644 * 205.08588 * 5 3 2 7 7 C 1.53097 * 109.51141 * 85.00047 * 5 3 2 8 8 O 1.43013 * 109.26446 * 183.17273 * 7 5 3 9 9 C 1.43012 * 113.73886 * 58.66496 * 8 7 5 10 10 C 1.53105 * 109.29655 * 301.31261 * 9 8 7 11 11 N 1.47013 * 109.54617 * 325.19150 * 5 3 2 12 12 C 1.46901 * 111.00352 * 302.35522 * 11 5 3 13 13 C 1.52996 * 109.46987 * 273.20507 * 12 11 5 14 14 C 1.52999 * 109.47448 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46789 * 59.99788 * 14 13 12 16 16 C 1.50702 * 109.47470 * 60.00103 * 15 14 13 17 17 H 1.07996 * 120.00071 * 239.99729 * 16 15 14 18 18 C 1.37877 * 119.99922 * 59.99757 * 16 15 14 19 19 N 1.31520 * 119.99549 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00216 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46972 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46942 * 120.00335 * 20 18 16 23 23 H 1.48494 * 109.47262 * 240.00168 * 20 18 16 24 24 C 1.53005 * 109.47051 * 299.99956 * 15 14 13 25 25 C 1.52992 * 109.47608 * 153.20030 * 12 11 5 26 26 H 1.09000 * 109.47215 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.46995 * 59.99999 * 1 2 3 28 28 H 1.08992 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47297 * 289.14941 * 6 5 3 30 30 H 1.09002 * 109.47177 * 49.14410 * 6 5 3 31 31 H 1.09000 * 109.47319 * 169.14649 * 6 5 3 32 32 H 1.08999 * 109.50608 * 63.22941 * 7 5 3 33 33 H 1.09007 * 109.50091 * 303.10899 * 7 5 3 34 34 H 1.09002 * 109.50634 * 61.27014 * 9 8 7 35 35 H 1.09004 * 109.51036 * 181.35406 * 9 8 7 36 36 H 1.08998 * 109.50344 * 176.80316 * 10 9 8 37 37 H 1.09004 * 109.50385 * 296.93569 * 10 9 8 38 38 H 1.09004 * 109.46995 * 33.19831 * 12 11 5 39 39 H 1.09008 * 109.47177 * 299.99492 * 13 12 11 40 40 H 1.08999 * 109.47546 * 59.99216 * 13 12 11 41 41 H 1.08994 * 109.47052 * 299.99914 * 14 13 12 42 42 H 1.09001 * 109.47426 * 179.97438 * 14 13 12 43 43 H 1.09005 * 109.47022 * 180.02562 * 15 14 13 44 44 H 0.97001 * 119.99610 * 179.97438 * 19 18 16 45 45 H 1.08994 * 109.47331 * 300.00205 * 24 15 14 46 46 H 1.09003 * 109.46741 * 179.97438 * 24 15 14 47 47 H 1.09003 * 109.47078 * 300.00333 * 25 12 11 48 48 H 1.09004 * 109.47105 * 59.99869 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0084 2.6058 0.6110 7 6 4.0830 1.1763 -1.4384 8 8 5.5130 1.1772 -1.4270 9 6 6.0833 0.1085 -0.6667 10 6 5.5880 0.1958 0.7793 11 7 4.1173 0.1645 0.7898 12 6 3.6004 0.1895 2.1646 13 6 4.4822 1.0969 3.0246 14 6 3.9435 1.1235 4.4564 15 6 3.9557 -0.2939 5.0322 16 6 5.3670 -0.8225 5.0362 17 1 5.6105 -1.7162 4.4810 18 6 6.3473 -0.1651 5.7488 19 7 6.0505 0.9230 6.4254 20 14 8.0968 -0.8197 5.7533 21 1 8.1681 -2.0470 4.9204 22 1 9.0117 0.2092 5.1972 23 1 8.5013 -1.1415 7.1454 24 6 3.0737 -1.2014 4.1722 25 6 3.6129 -1.2280 2.7401 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.7689 3.4183 -0.0751 30 1 3.4875 2.7625 1.5556 31 1 5.0837 2.5850 0.7881 32 1 3.7230 2.0292 -2.0137 33 1 3.7231 0.2527 -1.8918 34 1 5.7818 -0.8462 -1.0978 35 1 7.1703 0.1887 -0.6846 36 1 5.9752 -0.6494 1.3483 37 1 5.9352 1.1268 1.2274 38 1 2.5795 0.5715 2.1620 39 1 5.5032 0.7149 3.0273 40 1 4.4733 2.1068 2.6146 41 1 2.9228 1.5057 4.4535 42 1 4.5721 1.7697 5.0692 43 1 3.5715 -0.2751 6.0521 44 1 6.7401 1.3853 6.9270 45 1 2.0530 -0.8191 4.1692 46 1 3.0828 -2.2113 4.5822 47 1 2.9846 -1.8745 2.1274 48 1 4.6338 -1.6101 2.7427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:54 Heat of formation + Delta-G solvation = -117.012151 kcal Electronic energy + Delta-G solvation = -29341.760915 eV Core-core repulsion = 25590.225778 eV Total energy + Delta-G solvation = -3751.535137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30307 -39.51063 -37.76654 -36.50246 -35.21770 -32.63834 -31.91118 -29.76946 -29.35059 -28.00291 -27.35003 -26.02934 -24.70217 -24.34474 -21.82229 -21.28996 -20.77222 -19.24532 -18.52675 -17.61680 -16.90759 -16.82756 -15.84949 -15.77731 -15.56380 -15.35792 -14.67085 -14.39736 -14.25836 -13.99008 -13.64524 -13.35828 -13.18120 -12.89842 -12.79287 -12.30550 -12.07393 -12.00075 -11.98720 -11.60484 -11.47193 -11.29691 -11.19980 -10.95609 -10.77379 -10.73527 -10.70202 -10.53445 -10.41876 -10.13547 -10.06269 -9.70751 -9.67255 -9.09167 -8.90218 -8.64927 -8.30954 -7.95253 -5.97441 -4.01845 2.13767 2.69358 3.26619 3.36264 3.38355 3.76637 3.84443 4.42760 4.61577 4.69134 4.90563 5.04360 5.07918 5.16116 5.21736 5.32824 5.35855 5.46668 5.48734 5.51267 5.65787 5.70438 5.74439 5.79282 5.92800 6.02228 6.08615 6.23481 6.28974 6.39145 6.42246 6.42860 6.53806 6.73887 6.75170 6.87120 6.94938 7.03152 7.07630 7.23183 7.35023 7.41041 7.55749 7.74637 7.79268 7.93669 8.15434 8.48793 9.01186 9.61301 11.08398 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.005509 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.575439 B = 5081.831129 C = 5926.890055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.335 6.335 3 C 0.482 3.518 4 O -0.508 6.508 5 C 0.083 3.917 6 C -0.168 4.168 7 C 0.083 3.917 8 O -0.374 6.374 9 C 0.058 3.942 10 C 0.012 3.988 11 N -0.511 5.511 12 C 0.093 3.907 13 C -0.143 4.143 14 C -0.104 4.104 15 C 0.043 3.957 16 C -0.498 4.498 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.881 3.119 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.107 4.107 25 C -0.087 4.087 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.010 0.990 42 H 0.091 0.909 43 H 0.023 0.977 44 H 0.257 0.743 45 H 0.030 0.970 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 -0.921 -14.631 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.250 6.250 3 C 0.324 3.676 4 O -0.395 6.395 5 C -0.009 4.009 6 C -0.226 4.226 7 C 0.005 3.995 8 O -0.292 6.292 9 C -0.018 4.018 10 C -0.116 4.116 11 N -0.237 5.237 12 C -0.014 4.014 13 C -0.181 4.181 14 C -0.143 4.143 15 C 0.024 3.976 16 C -0.536 4.536 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.710 3.290 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.145 4.145 25 C -0.125 4.125 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.109 0.891 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.658 -0.821 -14.852 15.914 hybrid contribution 0.796 0.349 0.748 1.147 sum -4.862 -0.471 -14.103 14.925 Atomic orbital electron populations 1.23278 0.77091 1.03664 1.02213 1.86667 1.22495 1.32639 1.83161 1.23332 0.91063 0.81458 0.71698 1.90658 1.66688 1.36602 1.45589 1.21640 0.87313 0.93624 0.98276 1.22560 1.02999 0.95094 1.01984 1.22530 0.82084 1.02863 0.92046 1.87998 1.18306 1.51078 1.71850 1.22837 0.98320 0.90262 0.90425 1.22984 0.87727 1.03660 0.97193 1.62767 1.07247 1.39287 1.14357 1.21797 0.97043 0.98000 0.84600 1.22420 1.01203 0.97295 0.97217 1.21462 0.96975 1.01306 0.94525 1.18700 0.94294 0.90792 0.93771 1.21171 0.93329 1.10033 1.29061 0.92622 1.24943 0.98427 0.95063 0.95563 1.69884 1.32989 1.18144 1.32002 0.86704 0.85573 0.78948 0.77813 1.19808 1.21186 1.21197 1.21567 0.97539 1.00055 0.95329 1.21316 1.01809 0.94027 0.95320 0.91979 0.92239 0.88084 0.91501 0.90617 0.89975 0.88248 0.91534 0.92135 0.88231 0.88204 0.92064 0.92514 0.90162 0.93526 0.97139 0.89080 0.95906 0.93250 0.95104 0.93332 0.93581 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.33 -4.79 9.83 -39.28 -0.39 -5.18 16 3 C 0.48 7.40 5.08 36.00 0.18 7.59 16 4 O -0.51 -8.63 16.02 -18.75 -0.30 -8.93 16 5 C 0.08 1.21 0.65 -132.64 -0.09 1.12 16 6 C -0.17 -2.50 5.92 37.16 0.22 -2.28 16 7 C 0.08 1.03 5.66 37.21 0.21 1.24 16 8 O -0.37 -4.93 10.48 -35.23 -0.37 -5.30 16 9 C 0.06 0.71 7.01 37.21 0.26 0.97 16 10 C 0.01 0.17 4.02 -3.66 -0.01 0.16 16 11 N -0.51 -7.88 4.16 -212.05 -0.88 -8.76 16 12 C 0.09 1.64 1.51 -67.72 -0.10 1.54 16 13 C -0.14 -2.84 3.48 -26.73 -0.09 -2.93 16 14 C -0.10 -2.39 5.24 -26.73 -0.14 -2.53 16 15 C 0.04 1.02 2.59 -91.77 -0.24 0.79 16 16 C -0.50 -12.70 6.61 -34.44 -0.23 -12.93 16 17 H 0.06 1.41 6.71 -52.49 -0.35 1.06 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 19 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 20 Si 0.88 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.11 -2.17 5.41 -26.71 -0.14 -2.31 16 25 C -0.09 -1.61 5.18 -26.71 -0.14 -1.75 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.08 1.25 6.00 -51.93 -0.31 0.94 16 31 H 0.08 1.22 5.51 -51.93 -0.29 0.94 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.53 7.19 -51.93 -0.37 1.15 16 37 H 0.06 0.96 4.61 -51.93 -0.24 0.72 16 38 H 0.06 1.07 6.21 -51.93 -0.32 0.74 16 39 H 0.08 1.72 5.52 -51.92 -0.29 1.44 16 40 H 0.05 0.88 4.22 -51.93 -0.22 0.66 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.07 1.38 5.79 -51.93 -0.30 1.08 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -28.60 348.78 -8.05 -36.64 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.63 Total: 3.24 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 0.66 Total: -8.41 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.25 Total: -32.79 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.06 Total: -19.40 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.60 -8.05 -36.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.367 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds