Wall clock time and date at job start Fri Apr 10 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34237 * 117.00171 * 2 1 4 4 O 1.20820 * 119.99606 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.50644 * 205.08588 * 5 3 2 7 7 C 1.53097 * 109.51141 * 85.00047 * 5 3 2 8 8 O 1.43013 * 109.26446 * 183.17273 * 7 5 3 9 9 C 1.43012 * 113.73886 * 58.66496 * 8 7 5 10 10 C 1.53105 * 109.29655 * 301.31261 * 9 8 7 11 11 N 1.47013 * 109.54617 * 325.19150 * 5 3 2 12 12 C 1.46901 * 111.00352 * 302.35522 * 11 5 3 13 13 C 1.52996 * 109.46987 * 273.20507 * 12 11 5 14 14 C 1.52999 * 109.47448 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46789 * 59.99788 * 14 13 12 16 16 C 1.50702 * 109.47470 * 60.00103 * 15 14 13 17 17 H 1.07996 * 120.00071 * 239.99729 * 16 15 14 18 18 C 1.37877 * 119.99922 * 59.99757 * 16 15 14 19 19 N 1.31520 * 119.99549 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00216 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46972 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46942 * 120.00335 * 20 18 16 23 23 H 1.48494 * 109.47262 * 240.00168 * 20 18 16 24 24 C 1.53005 * 109.47051 * 299.99956 * 15 14 13 25 25 C 1.52992 * 109.47608 * 153.20030 * 12 11 5 26 26 H 1.09000 * 109.47215 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.46995 * 59.99999 * 1 2 3 28 28 H 1.08992 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47297 * 289.14941 * 6 5 3 30 30 H 1.09002 * 109.47177 * 49.14410 * 6 5 3 31 31 H 1.09000 * 109.47319 * 169.14649 * 6 5 3 32 32 H 1.08999 * 109.50608 * 63.22941 * 7 5 3 33 33 H 1.09007 * 109.50091 * 303.10899 * 7 5 3 34 34 H 1.09002 * 109.50634 * 61.27014 * 9 8 7 35 35 H 1.09004 * 109.51036 * 181.35406 * 9 8 7 36 36 H 1.08998 * 109.50344 * 176.80316 * 10 9 8 37 37 H 1.09004 * 109.50385 * 296.93569 * 10 9 8 38 38 H 1.09004 * 109.46995 * 33.19831 * 12 11 5 39 39 H 1.09008 * 109.47177 * 299.99492 * 13 12 11 40 40 H 1.08999 * 109.47546 * 59.99216 * 13 12 11 41 41 H 1.08994 * 109.47052 * 299.99914 * 14 13 12 42 42 H 1.09001 * 109.47426 * 179.97438 * 14 13 12 43 43 H 1.09005 * 109.47022 * 180.02562 * 15 14 13 44 44 H 0.97001 * 119.99610 * 179.97438 * 19 18 16 45 45 H 1.08994 * 109.47331 * 300.00205 * 24 15 14 46 46 H 1.09003 * 109.46741 * 179.97438 * 24 15 14 47 47 H 1.09003 * 109.47078 * 300.00333 * 25 12 11 48 48 H 1.09004 * 109.47105 * 59.99869 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0084 2.6058 0.6110 7 6 4.0830 1.1763 -1.4384 8 8 5.5130 1.1772 -1.4270 9 6 6.0833 0.1085 -0.6667 10 6 5.5880 0.1958 0.7793 11 7 4.1173 0.1645 0.7898 12 6 3.6004 0.1895 2.1646 13 6 4.4822 1.0969 3.0246 14 6 3.9435 1.1235 4.4564 15 6 3.9557 -0.2939 5.0322 16 6 5.3670 -0.8225 5.0362 17 1 5.6105 -1.7162 4.4810 18 6 6.3473 -0.1651 5.7488 19 7 6.0505 0.9230 6.4254 20 14 8.0968 -0.8197 5.7533 21 1 8.1681 -2.0470 4.9204 22 1 9.0117 0.2092 5.1972 23 1 8.5013 -1.1415 7.1454 24 6 3.0737 -1.2014 4.1722 25 6 3.6129 -1.2280 2.7401 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.7689 3.4183 -0.0751 30 1 3.4875 2.7625 1.5556 31 1 5.0837 2.5850 0.7881 32 1 3.7230 2.0292 -2.0137 33 1 3.7231 0.2527 -1.8918 34 1 5.7818 -0.8462 -1.0978 35 1 7.1703 0.1887 -0.6846 36 1 5.9752 -0.6494 1.3483 37 1 5.9352 1.1268 1.2274 38 1 2.5795 0.5715 2.1620 39 1 5.5032 0.7149 3.0273 40 1 4.4733 2.1068 2.6146 41 1 2.9228 1.5057 4.4535 42 1 4.5721 1.7697 5.0692 43 1 3.5715 -0.2751 6.0521 44 1 6.7401 1.3853 6.9270 45 1 2.0530 -0.8191 4.1692 46 1 3.0828 -2.2113 4.5822 47 1 2.9846 -1.8745 2.1274 48 1 4.6338 -1.6101 2.7427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:53 Heat of formation + Delta-G solvation = -134.141694 kcal Electronic energy + Delta-G solvation = -29342.503708 eV Core-core repulsion = 25590.225778 eV Total energy + Delta-G solvation = -3752.277930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.49380 -40.70088 -39.19588 -37.62683 -36.61079 -34.29029 -33.31675 -31.42993 -30.84275 -29.06418 -28.54132 -27.37493 -26.38981 -25.54094 -23.23560 -22.67558 -22.30027 -20.59452 -20.08430 -18.79854 -18.13288 -17.99815 -17.51128 -16.96810 -16.71431 -16.66235 -16.39219 -15.68094 -15.50571 -15.18796 -15.10930 -14.79059 -14.64449 -14.33460 -14.03428 -13.58356 -13.51749 -13.35118 -13.07481 -13.00045 -12.94136 -12.79865 -12.76108 -12.60186 -12.33125 -12.19142 -12.02251 -11.91473 -11.77229 -11.72098 -11.45460 -11.36115 -11.00059 -10.77352 -10.64283 -10.40002 -10.26969 -9.31372 -8.00976 -6.11240 0.97041 1.40900 1.45226 1.54144 1.64565 2.47251 2.58346 2.83219 3.27660 3.53001 3.58518 3.82094 3.86430 4.02591 4.19019 4.27644 4.30670 4.32827 4.33457 4.37804 4.49714 4.53420 4.58629 4.65174 4.68704 4.69851 4.72178 4.77838 4.84034 4.92328 4.98043 5.00344 5.10519 5.14025 5.25549 5.29351 5.41201 5.49170 5.57016 5.64816 5.70734 5.88182 5.95709 6.03008 6.07112 6.21029 6.47259 6.65265 6.98982 7.54956 9.04174 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.005509 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.575439 B = 5081.831129 C = 5926.890055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.342 6.342 3 C 0.483 3.517 4 O -0.530 6.530 5 C 0.081 3.919 6 C -0.164 4.164 7 C 0.085 3.915 8 O -0.380 6.380 9 C 0.063 3.937 10 C 0.010 3.990 11 N -0.504 5.504 12 C 0.105 3.895 13 C -0.130 4.130 14 C -0.100 4.100 15 C 0.039 3.961 16 C -0.497 4.497 17 H 0.058 0.942 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.940 3.060 21 H -0.261 1.261 22 H -0.284 1.284 23 H -0.290 1.290 24 C -0.101 4.101 25 C -0.078 4.078 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.057 0.943 43 H -0.016 1.016 44 H 0.255 0.745 45 H 0.040 0.960 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 -2.163 -17.103 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C 0.326 3.674 4 O -0.419 6.419 5 C -0.011 4.011 6 C -0.222 4.222 7 C 0.008 3.992 8 O -0.298 6.298 9 C -0.013 4.013 10 C -0.117 4.117 11 N -0.229 5.229 12 C -0.002 4.002 13 C -0.169 4.169 14 C -0.139 4.139 15 C 0.020 3.980 16 C -0.536 4.536 17 H 0.076 0.924 18 C -0.184 4.184 19 N -0.563 5.563 20 Si 0.767 3.233 21 H -0.185 1.185 22 H -0.210 1.210 23 H -0.216 1.216 24 C -0.140 4.140 25 C -0.116 4.116 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.002 0.998 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.474 -2.087 -17.341 18.304 hybrid contribution 0.655 0.743 1.563 1.850 sum -4.819 -1.344 -15.778 16.553 Atomic orbital electron populations 1.23579 0.75203 1.05717 1.02367 1.86640 1.24403 1.31931 1.82708 1.23420 0.91286 0.81514 0.71160 1.90649 1.67194 1.37322 1.46746 1.21757 0.87177 0.92738 0.99447 1.22483 1.02510 0.96039 1.01203 1.22623 0.81801 1.04287 0.90501 1.88004 1.18575 1.51537 1.71704 1.22900 0.99359 0.90670 0.88376 1.23030 0.86980 1.02624 0.99099 1.62743 1.07848 1.39797 1.12485 1.21532 0.96132 0.96838 0.85734 1.22276 1.00513 0.98420 0.95645 1.21325 0.96472 1.00036 0.96033 1.18692 0.94447 0.92242 0.92607 1.21386 0.93994 1.09752 1.28425 0.92367 1.25632 1.02010 0.95288 0.95493 1.70040 1.33918 1.19373 1.32941 0.85768 0.81293 0.78723 0.77522 1.18539 1.21008 1.21643 1.21472 0.97320 0.99234 0.95932 1.21210 1.01392 0.94720 0.94242 0.92788 0.91187 0.85131 0.90401 0.92814 0.90171 0.86711 0.90260 0.90788 0.86288 0.88932 0.93472 0.93232 0.91741 0.92775 0.96959 0.92455 0.99755 0.93550 0.94119 0.93032 0.91547 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.56 113.37 1.20 1.67 16 2 O -0.34 -8.99 9.83 -51.49 -0.51 -9.50 16 3 C 0.48 14.00 5.08 71.23 0.36 14.36 16 4 O -0.53 -17.38 16.02 21.98 0.35 -17.03 16 5 C 0.08 2.19 0.65 2.79 0.00 2.19 16 6 C -0.16 -4.73 5.92 71.98 0.43 -4.31 16 7 C 0.09 1.89 5.66 72.01 0.41 2.30 16 8 O -0.38 -8.88 10.48 -148.98 -1.56 -10.44 16 9 C 0.06 1.36 7.01 72.02 0.50 1.86 16 10 C 0.01 0.28 4.02 86.30 0.35 0.63 16 11 N -0.50 -14.63 4.16 -824.80 -3.43 -18.06 16 12 C 0.11 3.65 1.51 44.91 0.07 3.71 16 13 C -0.13 -5.21 3.48 30.59 0.11 -5.11 16 14 C -0.10 -4.73 5.24 30.59 0.16 -4.57 16 15 C 0.04 1.89 2.59 -11.54 -0.03 1.86 16 16 C -0.50 -25.64 6.61 25.60 0.17 -25.47 16 17 H 0.06 2.93 6.71 -2.91 -0.02 2.91 16 18 C 0.01 0.71 5.30 84.65 0.45 1.16 16 19 N -0.92 -52.59 11.32 21.45 0.24 -52.35 16 20 Si 0.94 42.21 29.54 68.60 2.03 44.24 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 C -0.10 -4.07 5.41 30.61 0.17 -3.91 16 25 C -0.08 -2.76 5.18 30.60 0.16 -2.61 16 26 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 27 H 0.07 1.20 8.13 -2.39 -0.02 1.19 16 28 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.04 8.10 -2.39 -0.02 2.03 16 30 H 0.05 1.77 6.00 -2.39 -0.01 1.76 16 31 H 0.08 2.33 5.51 -2.39 -0.01 2.31 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 2.69 7.19 -2.39 -0.02 2.68 16 37 H 0.05 1.44 4.61 -2.39 -0.01 1.43 16 38 H 0.05 1.81 6.21 -2.39 -0.01 1.80 16 39 H 0.06 2.79 5.52 -2.38 -0.01 2.78 16 40 H 0.05 2.07 4.22 -2.39 -0.01 2.06 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 43 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 44 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.06 2.28 5.79 -2.39 -0.01 2.26 16 Total: -1.00 -61.92 348.78 2.57 -59.34 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.96 Total: 20.02 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.49 Total: -16.23 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -3.19 Total: -70.41 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.71 Total: -36.97 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -61.92 2.57 -59.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.798 kcal (2) G-P(sol) polarization free energy of solvation -61.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds