Wall clock time and date at job start Fri Apr 10 2020 22:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47167 * 2 1 4 4 C 1.52992 * 109.47139 * 120.00699 * 2 1 3 5 5 C 1.52992 * 109.47455 * 64.99964 * 4 2 1 6 6 H 1.09008 * 109.46838 * 304.99459 * 5 4 2 7 7 C 1.52997 * 109.47340 * 184.99901 * 5 4 2 8 8 O 1.42904 * 109.47481 * 64.99758 * 5 4 2 9 9 C 1.42895 * 114.00058 * 210.00175 * 8 5 4 10 10 C 1.53001 * 109.47217 * 179.97438 * 9 8 5 11 11 C 1.50700 * 109.47497 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99508 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00217 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.62932 * 359.97291 * 13 11 10 15 15 C 1.53187 * 108.77625 * 126.41524 * 14 13 11 16 16 C 1.53046 * 109.31363 * 54.63376 * 15 14 13 17 17 C 1.53046 * 109.53579 * 298.63645 * 16 15 14 18 18 H 1.08995 * 109.49499 * 301.40973 * 17 16 15 19 19 C 1.50700 * 109.49623 * 181.31259 * 17 16 15 20 20 H 1.08003 * 120.00020 * 0.02562 * 19 17 16 21 21 C 1.37876 * 120.00099 * 179.97438 * 19 17 16 22 22 N 1.31515 * 120.00019 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 119.99904 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47262 * 90.00545 * 23 21 19 25 25 H 1.48503 * 109.47135 * 210.00047 * 23 21 19 26 26 H 1.48500 * 109.47277 * 330.00092 * 23 21 19 27 27 C 1.46921 * 120.63131 * 179.97438 * 13 11 10 28 28 H 1.09002 * 109.47368 * 59.99472 * 1 2 3 29 29 H 1.09004 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46764 * 299.99915 * 1 2 3 31 31 H 1.09005 * 109.46503 * 240.00569 * 2 1 3 32 32 H 1.09000 * 109.46991 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47408 * 300.00504 * 3 2 1 34 34 H 1.09010 * 109.46561 * 60.00613 * 3 2 1 35 35 H 1.08995 * 109.47432 * 304.99408 * 4 2 1 36 36 H 1.09008 * 109.46871 * 184.99586 * 4 2 1 37 37 H 1.09000 * 109.47094 * 299.99658 * 7 5 4 38 38 H 1.09003 * 109.47311 * 60.00138 * 7 5 4 39 39 H 1.09000 * 109.47423 * 179.97438 * 7 5 4 40 40 H 1.09003 * 109.47499 * 60.00014 * 9 8 5 41 41 H 1.08995 * 109.47314 * 300.00185 * 9 8 5 42 42 H 1.09001 * 109.47130 * 60.00052 * 10 9 8 43 43 H 1.09003 * 109.47096 * 300.00131 * 10 9 8 44 44 H 1.09000 * 109.58351 * 246.20638 * 14 13 11 45 45 H 1.09002 * 109.58642 * 6.48295 * 14 13 11 46 46 H 1.09001 * 109.49833 * 294.68424 * 15 14 13 47 47 H 1.08996 * 109.49835 * 174.58430 * 15 14 13 48 48 H 1.08993 * 109.46296 * 178.61734 * 16 15 14 49 49 H 1.09000 * 109.45696 * 58.65290 * 16 15 14 50 50 H 0.96996 * 120.00301 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.58905 * 113.79723 * 27 13 11 52 52 H 1.09008 * 109.58585 * 353.36923 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6353 -2.1955 1.1877 6 1 0.5562 -2.2707 1.0526 7 6 2.0354 -2.8890 2.4915 8 8 2.2980 -2.8262 0.0899 9 6 1.5647 -3.9081 -0.4878 10 6 2.3645 -4.5044 -1.6478 11 6 1.5910 -5.6450 -2.2575 12 8 0.5068 -5.9511 -1.8080 13 7 2.1043 -6.3256 -3.3014 14 6 3.4166 -5.9668 -3.8564 15 6 4.2980 -7.2194 -3.8872 16 6 3.5738 -8.3292 -4.6528 17 6 2.2665 -8.6760 -3.9366 18 1 2.4836 -8.9931 -2.9167 19 6 1.5699 -9.7909 -4.6732 20 1 2.0150 -10.2109 -5.5632 21 6 0.3649 -10.2756 -4.2105 22 7 -0.1768 -9.7645 -3.1266 23 14 -0.4982 -11.6581 -5.1233 24 1 -0.0478 -12.9655 -4.5819 25 1 -1.9667 -11.5280 -4.9448 26 1 -0.1663 -11.5800 -6.5686 27 6 1.3623 -7.4402 -3.9060 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8902 35 1 1.6055 -0.2620 2.1369 36 1 3.1264 -0.6445 1.2949 37 1 3.1144 -2.8138 2.6267 38 1 1.5299 -2.4080 3.3289 39 1 1.7467 -3.9392 2.4479 40 1 0.6072 -3.5415 -0.8578 41 1 1.3928 -4.6748 0.2676 42 1 3.3222 -4.8710 -1.2782 43 1 2.5360 -3.7375 -2.4031 44 1 3.2924 -5.5823 -4.8687 45 1 3.8821 -5.2052 -3.2308 46 1 4.4959 -7.5502 -2.8677 47 1 5.2400 -6.9892 -4.3848 48 1 4.2091 -9.2137 -4.6974 49 1 3.3542 -7.9886 -5.6647 50 1 -1.0247 -10.1052 -2.8012 51 1 1.0704 -7.1762 -4.9224 52 1 0.4735 -7.6526 -3.3118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:34 Heat of formation + Delta-G solvation = -137.644085 kcal Electronic energy + Delta-G solvation = -26845.084457 eV Core-core repulsion = 23228.487746 eV Total energy + Delta-G solvation = -3616.596711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09677 -39.71603 -38.37933 -36.81456 -35.32957 -33.65910 -33.22916 -31.84848 -31.11304 -28.02599 -27.61881 -27.13658 -26.38509 -24.22116 -23.37002 -22.50156 -21.32361 -20.81200 -19.63370 -18.64667 -18.14571 -17.30862 -17.06093 -16.76716 -16.49774 -16.07568 -15.84747 -15.35099 -15.20777 -15.01544 -14.74122 -14.50856 -14.27477 -14.09176 -13.85793 -13.75571 -13.49147 -13.39596 -13.15026 -13.02952 -12.89699 -12.76735 -12.69776 -12.50013 -12.34951 -12.26603 -12.20728 -12.06216 -11.76034 -11.63186 -11.54088 -11.44219 -11.18945 -11.13506 -10.94621 -10.63383 -10.50993 -10.46463 -9.40389 -8.12055 -6.29130 1.39130 1.40175 1.50933 1.71664 2.06232 2.40766 2.81217 3.16525 3.68921 3.75671 3.94375 4.02354 4.05373 4.08971 4.17347 4.19817 4.28862 4.36178 4.36805 4.45994 4.48098 4.61731 4.66829 4.77332 4.78539 4.80979 4.82426 4.83651 4.87347 4.90463 4.94319 4.96318 5.07309 5.10061 5.11101 5.14788 5.26193 5.29375 5.30264 5.36808 5.40088 5.47787 5.54793 5.56679 5.64745 5.89751 5.99815 6.26567 6.32527 6.67664 6.84035 7.31977 7.41382 8.91336 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.002672 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.067587 B =10478.000253 C =10990.848930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.103 4.103 5 C 0.076 3.924 6 H 0.058 0.942 7 C -0.174 4.174 8 O -0.384 6.384 9 C 0.088 3.912 10 C -0.121 4.121 11 C 0.499 3.501 12 O -0.597 6.597 13 N -0.610 5.610 14 C 0.101 3.899 15 C -0.127 4.127 16 C -0.107 4.107 17 C 0.038 3.962 18 H -0.015 1.015 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.008 3.992 22 N -0.916 5.916 23 Si 0.958 3.042 24 H -0.275 1.275 25 H -0.288 1.288 26 H -0.262 1.262 27 C 0.125 3.875 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.037 0.963 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.051 0.949 47 H 0.105 0.895 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.259 0.741 51 H 0.035 0.965 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 21.145 6.221 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.200 4.200 4 C -0.141 4.141 5 C 0.018 3.982 6 H 0.076 0.924 7 C -0.232 4.232 8 O -0.304 6.304 9 C 0.010 3.990 10 C -0.160 4.160 11 C 0.288 3.712 12 O -0.479 6.479 13 N -0.341 5.341 14 C -0.020 4.020 15 C -0.165 4.165 16 C -0.144 4.144 17 C 0.018 3.982 18 H 0.003 0.997 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.555 5.555 23 Si 0.783 3.217 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.186 1.186 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.099 0.901 45 H 0.132 0.868 46 H 0.070 0.930 47 H 0.123 0.877 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.237 21.035 6.480 23.501 hybrid contribution -1.306 -1.519 -0.212 2.015 sum 6.930 19.515 6.268 21.637 Atomic orbital electron populations 1.21916 0.95567 1.01092 1.02187 1.21082 0.95571 0.96704 0.98376 1.21798 1.01085 0.95030 1.02051 1.21734 1.02048 0.91491 0.98783 1.22371 0.96317 0.93498 0.85975 0.92403 1.22291 1.02875 1.00423 0.97590 1.87801 1.46113 1.47640 1.48825 1.21924 0.93885 0.88863 0.94282 1.21417 1.00025 0.95846 0.98732 1.21181 0.86096 0.84090 0.79820 1.90690 1.24461 1.69790 1.62920 1.48530 1.20768 1.32776 1.32039 1.22058 0.81597 0.97915 1.00458 1.21915 0.99032 0.94918 1.00630 1.21528 0.96119 0.97954 0.98819 1.18901 0.92745 0.92165 0.94342 0.99662 1.21534 1.05782 1.18442 1.11653 0.91982 1.25911 0.98330 0.99207 0.95656 1.70092 1.18729 1.42981 1.23656 0.85560 0.77326 0.79404 0.79419 1.20091 1.21372 1.18565 1.21664 0.97325 0.85233 0.95523 0.92677 0.93970 0.91726 0.92046 0.92436 0.92677 0.92021 0.89157 0.90916 0.91517 0.89959 0.93831 0.93807 0.94449 0.86438 0.85734 0.90102 0.86814 0.93031 0.87695 0.93054 0.92460 0.93181 0.94644 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.95 71.98 0.64 -1.78 16 2 C -0.10 -1.58 2.87 -10.80 -0.03 -1.61 16 3 C -0.14 -1.80 9.19 71.98 0.66 -1.14 16 4 C -0.10 -1.59 4.39 30.59 0.13 -1.45 16 5 C 0.08 1.51 2.59 30.59 0.08 1.59 16 6 H 0.06 1.22 5.99 -2.38 -0.01 1.21 16 7 C -0.17 -3.18 9.53 71.98 0.69 -2.50 16 8 O -0.38 -9.33 9.44 -148.98 -1.41 -10.74 16 9 C 0.09 2.50 5.04 71.98 0.36 2.87 16 10 C -0.12 -3.28 4.42 29.85 0.13 -3.15 16 11 C 0.50 19.88 7.70 87.66 0.67 20.56 16 12 O -0.60 -30.33 15.40 -3.06 -0.05 -30.38 16 13 N -0.61 -24.13 2.97 -818.99 -2.43 -26.56 16 14 C 0.10 2.77 6.34 86.36 0.55 3.32 16 15 C -0.13 -3.66 6.08 30.67 0.19 -3.47 16 16 C -0.11 -4.10 5.11 30.63 0.16 -3.94 16 17 C 0.04 1.92 2.25 -11.47 -0.03 1.89 16 18 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 19 C -0.54 -29.78 8.56 25.60 0.22 -29.56 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 21 C 0.01 0.47 5.30 84.65 0.45 0.92 16 22 N -0.92 -56.42 11.40 21.45 0.24 -56.17 16 23 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 C 0.12 6.29 5.40 86.35 0.47 6.76 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 0.79 6.46 -2.38 -0.02 0.77 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 1.20 7.69 -2.38 -0.02 1.18 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.93 7.87 -2.39 -0.02 0.91 16 40 H 0.04 1.34 8.04 -2.39 -0.02 1.32 16 41 H 0.04 1.20 7.83 -2.39 -0.02 1.18 16 42 H 0.12 2.74 7.69 -2.39 -0.02 2.72 16 43 H 0.12 2.68 7.94 -2.39 -0.02 2.66 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.11 2.23 5.93 -2.39 -0.01 2.22 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.10 2.17 8.14 -2.39 -0.02 2.16 16 48 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 51 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.07 4.54 5.13 -2.38 -0.01 4.53 16 Total: -1.00 -72.51 400.69 4.57 -67.94 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.85 Total: 19.88 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.34 Total: -10.70 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.19 Total: -82.74 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.45 Total: -41.12 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -72.51 4.57 -67.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.707 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds