Wall clock time and date at job start Fri Apr 10 2020 22:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46891 * 119.99887 * 2 1 3 5 5 C 1.52998 * 109.47414 * 65.00191 * 4 2 1 6 6 O 1.42900 * 109.47234 * 179.97438 * 5 4 2 7 7 C 1.42902 * 113.99956 * 179.97438 * 6 5 4 8 8 H 1.09009 * 110.77230 * 26.77214 * 7 6 5 9 9 C 1.55152 * 110.72431 * 263.52895 * 7 6 5 10 10 C 1.55131 * 101.48311 * 205.96766 * 9 7 6 11 11 N 1.47424 * 104.72243 * 37.29634 * 10 9 7 12 12 C 1.34779 * 125.65066 * 155.81418 * 11 10 9 13 13 O 1.21279 * 120.00410 * 179.69282 * 12 11 10 14 14 C 1.50703 * 119.99541 * 359.69286 * 12 11 10 15 15 C 1.53001 * 109.46913 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47132 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46872 * 180.02562 * 16 15 14 18 18 C 1.50708 * 109.46973 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 C 1.47023 * 108.70530 * 335.55144 * 11 10 9 27 27 H 1.09000 * 109.47712 * 299.99882 * 1 2 3 28 28 H 1.09000 * 109.47222 * 60.00637 * 1 2 3 29 29 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47254 * 239.99844 * 2 1 3 31 31 H 1.09007 * 109.46998 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47436 * 299.99853 * 3 2 1 33 33 H 1.08999 * 109.47346 * 59.99900 * 3 2 1 34 34 H 1.09003 * 109.46887 * 304.99832 * 4 2 1 35 35 H 1.08999 * 109.46840 * 185.00350 * 4 2 1 36 36 H 1.09006 * 109.46680 * 59.99774 * 5 4 2 37 37 H 1.09003 * 109.46950 * 300.00319 * 5 4 2 38 38 H 1.08994 * 111.00314 * 324.20542 * 9 7 6 39 39 H 1.09000 * 111.00485 * 88.02452 * 9 7 6 40 40 H 1.08996 * 110.50148 * 278.45531 * 10 9 7 41 41 H 1.09000 * 110.33699 * 156.05639 * 10 9 7 42 42 H 1.08996 * 109.47057 * 60.00260 * 14 12 11 43 43 H 1.08999 * 109.47501 * 299.99602 * 14 12 11 44 44 H 1.09007 * 109.47231 * 60.00170 * 15 14 12 45 45 H 1.09000 * 109.47476 * 300.00175 * 15 14 12 46 46 H 1.08996 * 109.46845 * 60.00555 * 16 15 14 47 47 H 1.08996 * 109.47077 * 299.99725 * 16 15 14 48 48 H 1.08994 * 109.48028 * 60.00123 * 17 16 15 49 49 H 1.09000 * 109.47206 * 299.99977 * 17 16 15 50 50 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 51 51 H 1.09000 * 109.88519 * 120.70220 * 26 11 10 52 52 H 1.08999 * 109.88225 * 241.71759 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 8 2.1120 -2.8692 2.3546 7 6 1.7852 -4.2597 2.3971 8 1 1.6639 -4.6593 1.3902 9 6 0.5045 -4.4971 3.2401 10 6 0.7152 -5.9581 3.7172 11 7 2.1624 -6.0619 3.9781 12 6 2.7489 -6.9427 4.8129 13 8 3.9543 -6.9415 4.9465 14 6 1.9067 -7.9291 5.5802 15 6 2.8118 -8.8068 6.4470 16 6 1.9568 -9.8078 7.2266 17 6 2.8620 -10.6850 8.0938 18 6 2.0198 -11.6715 8.8612 19 1 0.9465 -11.6729 8.7420 20 6 2.6198 -12.5729 9.7148 21 7 1.8849 -13.4341 10.3841 22 14 4.4764 -12.5710 9.9205 23 1 5.0859 -13.4878 8.9238 24 1 4.8232 -13.0278 11.2903 25 1 4.9963 -11.1958 9.7109 26 6 2.8607 -5.0498 3.1722 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 2.0699 -2.6549 0.3003 37 1 0.5489 -2.2724 1.1421 38 1 0.4595 -3.8094 4.0845 39 1 -0.3903 -4.4140 2.6232 40 1 0.4188 -6.6605 2.9382 41 1 0.1507 -6.1433 4.6310 42 1 1.3544 -8.5567 4.8809 43 1 1.2051 -7.3901 6.2169 44 1 3.3646 -8.1795 7.1464 45 1 3.5132 -9.3459 5.8101 46 1 1.4039 -10.4352 6.5275 47 1 1.2559 -9.2684 7.8635 48 1 3.4147 -10.0575 8.7929 49 1 3.5633 -11.2245 7.4572 50 1 2.3070 -14.0679 10.9848 51 1 3.4176 -4.3765 3.8239 52 1 3.5413 -5.5369 2.4739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598582971.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:37 Heat of formation + Delta-G solvation = -120.086455 kcal Electronic energy + Delta-G solvation = -25108.754384 eV Core-core repulsion = 21492.919029 eV Total energy + Delta-G solvation = -3615.835355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34076 -38.89209 -37.39997 -36.11770 -35.00391 -32.59385 -31.54008 -30.17443 -29.99569 -28.58710 -27.70962 -25.91057 -23.72398 -23.65650 -22.01763 -21.36714 -20.42198 -20.00739 -19.25605 -17.66410 -17.11729 -16.56002 -16.37034 -15.96855 -15.59444 -15.34659 -14.86025 -14.77297 -14.33584 -14.16411 -13.98078 -13.92086 -13.24285 -13.00518 -12.92386 -12.74440 -12.61838 -12.56166 -12.30866 -12.17580 -12.10415 -12.00822 -11.71974 -11.69005 -11.35794 -11.24591 -11.14540 -11.10533 -11.04119 -10.70860 -10.51268 -9.98395 -9.93761 -9.79810 -9.62399 -9.40988 -9.09841 -8.84756 -8.47436 -5.98807 -3.96152 2.60945 2.66077 3.24901 3.37082 3.44043 3.50530 4.04391 4.11171 4.29989 4.33550 4.42079 4.52043 4.54095 4.65433 4.72268 4.82224 4.88179 4.91321 5.00319 5.11856 5.14531 5.19516 5.24551 5.27207 5.29377 5.33054 5.34471 5.36347 5.40324 5.48121 5.51806 5.56444 5.63084 5.67264 5.77992 5.78984 5.84418 6.03375 6.05468 6.19613 6.44035 6.70703 6.76279 6.84301 7.01504 7.33786 7.40718 7.53422 7.86742 8.15604 8.60246 9.06213 9.64773 11.14716 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.045688 B = 0.001641 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.706462 B =17054.560265 C =17448.331819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.060 3.940 6 O -0.374 6.374 7 C 0.079 3.921 8 H 0.079 0.921 9 C -0.155 4.155 10 C 0.100 3.900 11 N -0.625 5.625 12 C 0.529 3.471 13 O -0.534 6.534 14 C -0.133 4.133 15 C -0.107 4.107 16 C -0.102 4.102 17 C -0.016 4.016 18 C -0.519 4.519 19 H 0.071 0.929 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 C 0.109 3.891 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.016 0.984 49 H 0.011 0.989 50 H 0.262 0.738 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 28.789 -24.714 38.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.016 4.016 6 O -0.292 6.292 7 C 0.021 3.979 8 H 0.097 0.903 9 C -0.193 4.193 10 C -0.023 4.023 11 N -0.363 5.363 12 C 0.319 3.681 13 O -0.409 6.409 14 C -0.173 4.173 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.557 4.557 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.546 5.546 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.189 1.189 26 C -0.014 4.014 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.034 0.966 49 H 0.030 0.970 50 H 0.072 0.928 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.259 28.680 -24.302 37.832 hybrid contribution 0.661 -0.233 -0.085 0.706 sum -3.599 28.447 -24.387 37.641 Atomic orbital electron populations 1.21935 0.95085 1.01887 1.02033 1.21054 0.96028 0.96467 0.97774 1.21828 1.01142 0.95548 1.01962 1.21594 1.02045 0.93022 0.98596 1.22665 0.98288 0.93184 0.87481 1.87923 1.78295 1.20366 1.42642 1.23048 0.93994 0.82234 0.98664 0.90316 1.23336 0.98175 0.96551 1.01214 1.22350 0.81781 0.96426 1.01738 1.48500 1.07855 1.35319 1.44578 1.20827 0.88684 0.80358 0.78190 1.90712 1.14991 1.70749 1.64458 1.21759 0.99327 0.96838 0.99328 1.21506 0.97717 0.97210 0.98062 1.21473 0.98196 0.96362 0.97943 1.19580 0.95704 0.95087 0.94941 1.21190 0.95260 1.15393 1.23899 0.91104 1.25033 0.98092 0.95115 0.95307 1.69920 1.35531 1.20598 1.28518 0.86780 0.86346 0.78971 0.77237 1.20326 1.21451 1.18894 1.21760 0.94403 0.90406 0.94818 0.92432 0.92594 0.92533 0.91075 0.92519 0.92520 0.92502 0.90955 0.90986 0.93275 0.92924 0.89357 0.89681 0.90902 0.89670 0.89007 0.88991 0.91747 0.91761 0.92856 0.92826 0.96591 0.97049 0.92835 0.90254 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 8.95 37.16 0.33 -0.27 16 2 C -0.09 -0.41 2.92 -90.62 -0.26 -0.67 16 3 C -0.15 -0.60 9.19 37.16 0.34 -0.26 16 4 C -0.12 -0.63 5.05 -26.73 -0.14 -0.77 16 5 C 0.06 0.36 5.53 37.16 0.21 0.56 16 6 O -0.37 -3.16 10.07 -35.23 -0.35 -3.52 16 7 C 0.08 0.59 3.44 -24.90 -0.09 0.51 16 8 H 0.08 0.47 7.83 -51.92 -0.41 0.06 16 9 C -0.15 -0.98 6.82 -24.46 -0.17 -1.15 16 10 C 0.10 0.74 6.70 -2.41 -0.02 0.73 16 11 N -0.63 -7.02 3.32 -170.38 -0.57 -7.58 16 12 C 0.53 7.71 7.85 -10.98 -0.09 7.62 16 13 O -0.53 -10.00 16.31 5.56 0.09 -9.91 16 14 C -0.13 -1.77 4.70 -27.88 -0.13 -1.90 16 15 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 16 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 17 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 18 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 22 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 26 C 0.11 1.13 6.64 -3.06 -0.02 1.11 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.21 6.57 -51.93 -0.34 -0.13 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.26 8.12 -51.93 -0.42 -0.16 16 37 H 0.05 0.26 6.57 -51.93 -0.34 -0.08 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.57 7.48 -51.93 -0.39 0.18 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.06 7.85 -51.93 -0.41 0.66 16 44 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 45 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 49 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 50 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 51 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 52 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 410.37 15.07 6.18 6.18 Total: -1.00 -34.73 410.37 -9.63 -44.36 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -10.26 Total: -6.79 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.83 Total: -12.86 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.21 Total: -35.37 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.26 Total: -13.43 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.73 -9.63 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598582971.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.725 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds