Wall clock time and date at job start Fri Apr 10 2020 22:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46891 * 119.99887 * 2 1 3 5 5 C 1.52998 * 109.47414 * 65.00191 * 4 2 1 6 6 O 1.42900 * 109.47234 * 179.97438 * 5 4 2 7 7 C 1.42902 * 113.99956 * 179.97438 * 6 5 4 8 8 H 1.09009 * 110.77230 * 26.77214 * 7 6 5 9 9 C 1.55152 * 110.72431 * 263.52895 * 7 6 5 10 10 C 1.55131 * 101.48311 * 205.96766 * 9 7 6 11 11 N 1.47424 * 104.72243 * 37.29634 * 10 9 7 12 12 C 1.34779 * 125.65066 * 155.81418 * 11 10 9 13 13 O 1.21279 * 120.00410 * 179.69282 * 12 11 10 14 14 C 1.50703 * 119.99541 * 359.69286 * 12 11 10 15 15 C 1.53001 * 109.46913 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47132 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46872 * 180.02562 * 16 15 14 18 18 C 1.50708 * 109.46973 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 C 1.47023 * 108.70530 * 335.55144 * 11 10 9 27 27 H 1.09000 * 109.47712 * 299.99882 * 1 2 3 28 28 H 1.09000 * 109.47222 * 60.00637 * 1 2 3 29 29 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47254 * 239.99844 * 2 1 3 31 31 H 1.09007 * 109.46998 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47436 * 299.99853 * 3 2 1 33 33 H 1.08999 * 109.47346 * 59.99900 * 3 2 1 34 34 H 1.09003 * 109.46887 * 304.99832 * 4 2 1 35 35 H 1.08999 * 109.46840 * 185.00350 * 4 2 1 36 36 H 1.09006 * 109.46680 * 59.99774 * 5 4 2 37 37 H 1.09003 * 109.46950 * 300.00319 * 5 4 2 38 38 H 1.08994 * 111.00314 * 324.20542 * 9 7 6 39 39 H 1.09000 * 111.00485 * 88.02452 * 9 7 6 40 40 H 1.08996 * 110.50148 * 278.45531 * 10 9 7 41 41 H 1.09000 * 110.33699 * 156.05639 * 10 9 7 42 42 H 1.08996 * 109.47057 * 60.00260 * 14 12 11 43 43 H 1.08999 * 109.47501 * 299.99602 * 14 12 11 44 44 H 1.09007 * 109.47231 * 60.00170 * 15 14 12 45 45 H 1.09000 * 109.47476 * 300.00175 * 15 14 12 46 46 H 1.08996 * 109.46845 * 60.00555 * 16 15 14 47 47 H 1.08996 * 109.47077 * 299.99725 * 16 15 14 48 48 H 1.08994 * 109.48028 * 60.00123 * 17 16 15 49 49 H 1.09000 * 109.47206 * 299.99977 * 17 16 15 50 50 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 51 51 H 1.09000 * 109.88519 * 120.70220 * 26 11 10 52 52 H 1.08999 * 109.88225 * 241.71759 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 8 2.1120 -2.8692 2.3546 7 6 1.7852 -4.2597 2.3971 8 1 1.6639 -4.6593 1.3902 9 6 0.5045 -4.4971 3.2401 10 6 0.7152 -5.9581 3.7172 11 7 2.1624 -6.0619 3.9781 12 6 2.7489 -6.9427 4.8129 13 8 3.9543 -6.9415 4.9465 14 6 1.9067 -7.9291 5.5802 15 6 2.8118 -8.8068 6.4470 16 6 1.9568 -9.8078 7.2266 17 6 2.8620 -10.6850 8.0938 18 6 2.0198 -11.6715 8.8612 19 1 0.9465 -11.6729 8.7420 20 6 2.6198 -12.5729 9.7148 21 7 1.8849 -13.4341 10.3841 22 14 4.4764 -12.5710 9.9205 23 1 5.0859 -13.4878 8.9238 24 1 4.8232 -13.0278 11.2903 25 1 4.9963 -11.1958 9.7109 26 6 2.8607 -5.0498 3.1722 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 2.0699 -2.6549 0.3003 37 1 0.5489 -2.2724 1.1421 38 1 0.4595 -3.8094 4.0845 39 1 -0.3903 -4.4140 2.6232 40 1 0.4188 -6.6605 2.9382 41 1 0.1507 -6.1433 4.6310 42 1 1.3544 -8.5567 4.8809 43 1 1.2051 -7.3901 6.2169 44 1 3.3646 -8.1795 7.1464 45 1 3.5132 -9.3459 5.8101 46 1 1.4039 -10.4352 6.5275 47 1 1.2559 -9.2684 7.8635 48 1 3.4147 -10.0575 8.7929 49 1 3.5633 -11.2245 7.4572 50 1 2.3070 -14.0679 10.9848 51 1 3.4176 -4.3765 3.8239 52 1 3.5413 -5.5369 2.4739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598582971.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:37 Heat of formation + Delta-G solvation = -140.601017 kcal Electronic energy + Delta-G solvation = -25109.643962 eV Core-core repulsion = 21492.919029 eV Total energy + Delta-G solvation = -3616.724933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22872 -39.64241 -38.03514 -36.75298 -36.59833 -34.61409 -32.54454 -31.57494 -30.54214 -29.41585 -28.01577 -27.48928 -24.78523 -24.08980 -23.33149 -22.16694 -21.69947 -20.79951 -20.21075 -18.86103 -18.30222 -18.01036 -17.05494 -16.77722 -16.55531 -16.23549 -15.97646 -15.89109 -15.32046 -15.07063 -14.79839 -14.65294 -14.50494 -14.18495 -13.90043 -13.65386 -13.61751 -13.45610 -13.35367 -13.15693 -12.97921 -12.85707 -12.81611 -12.46034 -12.33830 -12.15331 -12.09236 -11.80477 -11.75714 -11.66540 -11.52351 -11.50120 -11.48017 -11.35256 -11.26487 -10.87595 -10.75758 -10.48378 -9.75215 -8.29594 -6.32466 1.34532 1.36176 1.49005 1.57242 1.78674 2.35971 2.67439 3.05988 3.36689 3.54404 3.78841 3.91859 3.93984 3.99568 4.02562 4.05503 4.12263 4.26675 4.30381 4.38459 4.46476 4.54237 4.56023 4.61463 4.64261 4.69487 4.73275 4.78869 4.79341 4.82706 4.84015 4.92506 4.96245 5.02110 5.07987 5.12945 5.13384 5.15634 5.18703 5.26299 5.29313 5.32636 5.45490 5.50463 5.59715 5.65479 5.68573 6.25522 6.29749 6.40727 6.75363 7.09837 7.32494 8.86960 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.045688 B = 0.001641 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.706462 B =17054.560265 C =17448.331819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.113 4.113 5 C 0.058 3.942 6 O -0.397 6.397 7 C 0.086 3.914 8 H 0.101 0.899 9 C -0.146 4.146 10 C 0.092 3.908 11 N -0.621 5.621 12 C 0.524 3.476 13 O -0.588 6.588 14 C -0.123 4.123 15 C -0.098 4.098 16 C -0.093 4.093 17 C -0.018 4.018 18 C -0.531 4.531 19 H 0.039 0.961 20 C 0.006 3.994 21 N -0.950 5.950 22 Si 0.946 3.054 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.254 1.254 26 C 0.103 3.897 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.013 0.987 49 H 0.012 0.988 50 H 0.266 0.734 51 H 0.054 0.946 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 29.882 -26.575 40.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.151 4.151 5 C -0.018 4.018 6 O -0.316 6.316 7 C 0.027 3.973 8 H 0.119 0.881 9 C -0.184 4.184 10 C -0.029 4.029 11 N -0.356 5.356 12 C 0.315 3.685 13 O -0.469 6.469 14 C -0.162 4.162 15 C -0.136 4.136 16 C -0.130 4.130 17 C -0.055 4.055 18 C -0.569 4.569 19 H 0.057 0.943 20 C -0.191 4.191 21 N -0.591 5.591 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.178 1.178 26 C -0.020 4.020 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.031 0.969 49 H 0.031 0.969 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.119 29.806 -26.196 40.011 hybrid contribution 0.829 -0.531 0.468 1.090 sum -4.290 29.275 -25.729 39.209 Atomic orbital electron populations 1.21931 0.94570 1.02257 1.02108 1.21033 0.96409 0.96325 0.97219 1.21841 1.01016 0.95599 1.02140 1.21579 1.01356 0.93229 0.98924 1.22804 0.99179 0.92917 0.86904 1.87902 1.78893 1.20870 1.43922 1.23040 0.93124 0.81668 0.99446 0.88079 1.23323 0.98627 0.95392 1.01018 1.22710 0.79211 0.97772 1.03213 1.48518 1.09828 1.34076 1.43160 1.20994 0.88057 0.80921 0.78523 1.90688 1.17198 1.72501 1.66488 1.21654 0.98566 0.96538 0.99479 1.21300 0.97651 0.96805 0.97875 1.21330 0.97688 0.96334 0.97662 1.19580 0.95930 0.94805 0.95180 1.21547 0.94448 1.16460 1.24428 0.94312 1.25954 1.03358 0.94722 0.95020 1.70055 1.37816 1.21653 1.29552 0.85722 0.80034 0.79618 0.77674 1.19202 1.20663 1.17798 1.21832 0.95494 0.90214 0.94445 0.92781 0.92120 0.92000 0.90625 0.92779 0.91891 0.92778 0.91760 0.92049 0.92417 0.91444 0.90479 0.86658 0.88573 0.88466 0.86383 0.86696 0.93218 0.92922 0.92184 0.92359 0.96904 0.96916 0.92514 0.92745 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.95 71.98 0.64 -0.27 16 2 C -0.09 -0.66 2.92 -10.79 -0.03 -0.70 16 3 C -0.15 -1.09 9.19 71.98 0.66 -0.43 16 4 C -0.11 -1.15 5.05 30.59 0.15 -0.99 16 5 C 0.06 0.57 5.53 71.98 0.40 0.97 16 6 O -0.40 -6.21 10.07 -148.98 -1.50 -7.71 16 7 C 0.09 1.10 3.44 31.78 0.11 1.21 16 8 H 0.10 0.86 7.83 -2.38 -0.02 0.84 16 9 C -0.15 -1.39 6.82 32.06 0.22 -1.17 16 10 C 0.09 1.06 6.70 86.93 0.58 1.64 16 11 N -0.62 -12.96 3.32 -811.34 -2.70 -15.66 16 12 C 0.52 14.78 7.85 87.66 0.69 15.47 16 13 O -0.59 -22.42 16.31 -3.02 -0.05 -22.46 16 14 C -0.12 -3.00 4.70 29.85 0.14 -2.86 16 15 C -0.10 -3.30 4.50 30.59 0.14 -3.16 16 16 C -0.09 -3.59 5.15 30.59 0.16 -3.44 16 17 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 18 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 19 H 0.04 2.47 7.99 -2.92 -0.02 2.45 16 20 C 0.01 0.37 5.47 84.65 0.46 0.84 16 21 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 22 Si 0.95 46.39 27.47 68.60 1.88 48.27 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.25 -11.94 6.54 99.48 0.65 -11.29 16 26 C 0.10 2.09 6.64 86.73 0.58 2.66 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.31 6.57 -2.39 -0.02 0.29 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.47 8.12 -2.38 -0.02 0.45 16 37 H 0.07 0.47 6.57 -2.39 -0.02 0.46 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.93 7.48 -2.39 -0.02 0.91 16 42 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.11 2.30 7.85 -2.39 -0.02 2.28 16 44 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 45 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 49 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 50 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 51 H 0.05 1.36 8.06 -2.39 -0.02 1.34 16 52 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -77.16 410.37 3.99 -73.18 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.78 Total: 6.97 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 5.27 Total: -22.20 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.40 Total: -76.05 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.55 Total: -30.17 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.88 Total: 48.27 kcal Total: -77.16 3.99 -73.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598582971.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.425 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds