Wall clock time and date at job start Fri Apr 10 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46759 * 2 1 4 4 C 1.53002 * 109.47690 * 293.90512 * 3 2 1 5 5 C 1.53005 * 109.47061 * 173.90476 * 3 2 1 6 6 N 1.46495 * 109.47179 * 53.90888 * 3 2 1 7 7 C 1.46507 * 120.00238 * 228.63622 * 6 3 2 8 8 C 1.50696 * 109.46847 * 266.40667 * 7 6 3 9 9 H 1.08003 * 120.00528 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99713 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99570 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99899 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47030 * 90.00206 * 12 10 8 14 14 H 1.48500 * 109.46734 * 209.99635 * 12 10 8 15 15 H 1.48492 * 109.46978 * 329.99643 * 12 10 8 16 16 C 1.34773 * 120.00209 * 48.63499 * 6 3 2 17 17 O 1.21282 * 120.00689 * 183.81415 * 16 6 3 18 18 C 1.50709 * 119.99915 * 3.81660 * 16 6 3 19 19 H 1.08998 * 115.54610 * 23.08735 * 18 16 6 20 20 C 1.52998 * 117.49733 * 237.41759 * 18 16 6 21 21 C 1.52994 * 117.51837 * 168.78835 * 18 16 6 22 22 H 1.09000 * 117.50035 * 359.97438 * 21 18 16 23 23 O 1.42899 * 117.50024 * 214.97033 * 21 18 16 24 24 C 1.42896 * 114.00289 * 150.00325 * 23 21 18 25 25 C 1.53000 * 109.47562 * 59.99651 * 24 23 21 26 26 C 1.53003 * 109.47175 * 180.02562 * 24 23 21 27 27 C 1.53006 * 109.46707 * 299.99770 * 24 23 21 28 28 H 1.09003 * 109.47240 * 305.45092 * 1 2 3 29 29 H 1.09003 * 109.47293 * 65.45510 * 1 2 3 30 30 H 1.09004 * 109.46887 * 185.45152 * 1 2 3 31 31 H 1.09004 * 109.46893 * 240.00711 * 2 1 3 32 32 H 1.08995 * 109.47318 * 120.00156 * 2 1 3 33 33 H 1.08993 * 109.47251 * 184.46293 * 4 3 2 34 34 H 1.09002 * 109.46856 * 304.46289 * 4 3 2 35 35 H 1.09005 * 109.46695 * 64.45681 * 4 3 2 36 36 H 1.08992 * 109.47249 * 302.89512 * 5 3 2 37 37 H 1.09003 * 109.46715 * 62.88948 * 5 3 2 38 38 H 1.08998 * 109.47612 * 182.88799 * 5 3 2 39 39 H 1.09003 * 109.46601 * 26.40418 * 7 6 3 40 40 H 1.08992 * 109.46921 * 146.40409 * 7 6 3 41 41 H 0.97006 * 119.99496 * 180.02562 * 11 10 8 42 42 H 1.09004 * 117.50235 * 359.97438 * 20 18 16 43 43 H 1.09000 * 117.50173 * 144.97131 * 20 18 16 44 44 H 1.09008 * 109.46402 * 60.00056 * 25 24 23 45 45 H 1.09000 * 109.47479 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47333 * 300.00475 * 25 24 23 47 47 H 1.09004 * 109.46974 * 60.00010 * 26 24 23 48 48 H 1.09001 * 109.46991 * 179.97438 * 26 24 23 49 49 H 1.08998 * 109.46851 * 299.99778 * 26 24 23 50 50 H 1.08997 * 109.46933 * 60.00293 * 27 24 23 51 51 H 1.09000 * 109.46665 * 180.02562 * 27 24 23 52 52 H 1.08992 * 109.47396 * 299.99871 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6588 2.1183 -1.3187 5 6 3.5623 1.4453 0.1532 6 7 1.4356 2.1741 1.1161 7 6 0.8265 3.4868 0.8874 8 6 1.8421 4.5661 1.1607 9 1 2.8411 4.3009 1.4739 10 6 1.4958 5.8923 1.0110 11 7 2.3820 6.8343 1.2500 12 14 -0.2319 6.3510 0.4687 13 1 -1.0980 6.5171 1.6635 14 1 -0.1897 7.6251 -0.2929 15 1 -0.7813 5.2757 -0.3954 16 6 1.4398 1.6396 2.3533 17 8 0.8792 2.2125 3.2635 18 6 2.1412 0.3298 2.6059 19 1 2.9254 0.0716 1.8942 20 6 1.3105 -0.8156 3.1881 21 6 2.3401 -0.0963 4.0617 22 1 1.9641 0.5709 4.8373 23 8 3.5398 -0.8023 4.3846 24 6 3.9991 -0.5875 5.7205 25 6 2.9254 -1.0464 6.7091 26 6 5.2827 -1.3871 5.9534 27 6 4.2816 0.9017 5.9294 28 1 -0.3634 0.5961 0.8372 29 1 -0.3634 0.4269 -0.9348 30 1 -0.3633 -1.0231 0.0976 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0896 3.1189 -1.3520 34 1 2.0419 1.5299 -2.1525 35 1 0.5734 2.1873 -1.3912 36 1 3.8364 0.9188 1.0672 37 1 4.0145 0.9456 -0.7035 38 1 3.9204 2.4735 0.2047 39 1 0.4917 3.5566 -0.1475 40 1 -0.0262 3.6128 1.5545 41 1 2.1382 7.7673 1.1451 42 1 0.2568 -0.6217 3.3889 43 1 1.5479 -1.8273 2.8592 44 1 2.7242 -2.1074 6.5602 45 1 3.2759 -0.8830 7.7282 46 1 2.0112 -0.4765 6.5431 47 1 6.0475 -1.0596 5.2491 48 1 5.6333 -1.2228 6.9723 49 1 5.0819 -2.4480 5.8044 50 1 3.3674 1.4716 5.7634 51 1 4.6324 1.0655 6.9483 52 1 5.0465 1.2287 5.2252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598833607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:40 Heat of formation + Delta-G solvation = -42.772979 kcal Electronic energy + Delta-G solvation = -28674.226910 eV Core-core repulsion = 25061.744119 eV Total energy + Delta-G solvation = -3612.482791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36576 -38.92682 -36.90547 -35.64502 -33.21559 -32.43336 -31.69175 -30.08303 -28.71582 -27.55883 -27.36823 -26.69658 -24.02481 -23.20702 -22.23286 -21.68666 -20.33389 -19.85934 -18.06813 -16.90075 -16.64136 -16.24658 -15.65615 -14.96975 -14.83401 -14.74782 -14.14572 -14.10380 -13.87009 -13.45263 -13.37892 -13.07843 -12.78684 -12.51809 -12.46188 -12.35796 -12.23713 -12.08937 -11.98596 -11.88589 -11.85366 -11.78074 -11.48393 -11.30340 -11.26118 -11.14682 -10.87198 -10.64599 -10.59690 -10.49993 -10.35154 -10.22657 -10.03326 -9.83383 -9.44905 -9.13958 -8.82557 -8.54901 -7.61798 -6.05408 -4.02690 3.06729 3.29587 3.35313 3.37510 3.40758 3.91016 4.21993 4.41797 4.74403 4.78303 4.91679 4.95174 4.96373 5.06533 5.12983 5.23309 5.28336 5.33264 5.41074 5.45549 5.51365 5.53881 5.56819 5.63963 5.75427 5.78987 5.79419 5.80206 5.88780 5.90690 5.99647 6.00577 6.05856 6.10750 6.15189 6.20002 6.28745 6.31161 6.32989 6.37771 6.49853 6.72153 6.75442 6.84111 7.00876 7.33895 7.45564 7.65562 8.35336 8.51574 8.98198 9.06290 9.55736 11.08052 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.004650 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.704000 B = 6020.517713 C = 6965.625114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.170 3.830 4 C -0.150 4.150 5 C -0.168 4.168 6 N -0.575 5.575 7 C 0.210 3.790 8 C -0.521 4.521 9 H 0.074 0.926 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.872 3.128 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.545 3.455 17 O -0.546 6.546 18 C -0.196 4.196 19 H 0.140 0.860 20 C -0.161 4.161 21 C 0.047 3.953 22 H 0.124 0.876 23 O -0.345 6.345 24 C 0.108 3.892 25 C -0.176 4.176 26 C -0.136 4.136 27 C -0.181 4.181 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.031 0.969 41 H 0.263 0.737 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.064 0.936 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -18.544 2.583 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C 0.084 3.916 4 C -0.208 4.208 5 C -0.226 4.226 6 N -0.306 5.306 7 C 0.090 3.910 8 C -0.559 4.559 9 H 0.092 0.908 10 C -0.130 4.130 11 N -0.538 5.538 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.332 3.668 17 O -0.424 6.424 18 C -0.216 4.216 19 H 0.157 0.843 20 C -0.198 4.198 21 C -0.011 4.011 22 H 0.141 0.859 23 O -0.264 6.264 24 C 0.070 3.930 25 C -0.234 4.234 26 C -0.194 4.194 27 C -0.238 4.238 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.530 -18.125 2.907 18.420 hybrid contribution -0.866 0.678 -0.257 1.129 sum 0.664 -17.447 2.650 17.660 Atomic orbital electron populations 1.21726 0.95663 1.00829 1.02239 1.22492 0.96941 0.96317 1.03383 1.20313 0.92655 0.90969 0.87678 1.22095 1.01909 1.02101 0.94664 1.22468 0.95083 1.03727 1.01279 1.47873 1.56764 1.19670 1.06286 1.19758 0.94666 0.79617 0.96955 1.21329 0.99074 0.89583 1.45930 0.90758 1.24837 0.96833 0.96305 0.94984 1.69902 1.34250 1.00140 1.49464 0.86909 0.85625 0.78191 0.79330 1.20036 1.21163 1.19072 1.19166 0.80134 0.84736 0.82782 1.90645 1.45835 1.62916 1.43035 1.23359 1.03900 0.95526 0.98846 0.84270 1.23425 0.97397 0.96203 1.02813 1.22618 0.87499 0.97707 0.93317 0.85887 1.87853 1.40400 1.68213 1.29940 1.21535 0.94192 0.95098 0.82220 1.22462 0.99381 1.02146 0.99395 1.21756 0.95603 1.00074 1.01933 1.22487 1.03367 0.95607 1.02348 0.92368 0.92904 0.93320 0.91434 0.89465 0.90295 0.92372 0.92111 0.92163 0.92325 0.90739 0.94303 0.95120 0.92688 0.87865 0.87779 0.91864 0.91660 0.91853 0.91740 0.91132 0.91955 0.91463 0.91678 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.38 37.16 0.35 -1.62 16 2 C -0.15 -2.03 4.39 -26.73 -0.12 -2.15 16 3 C 0.17 2.76 0.70 -131.82 -0.09 2.67 16 4 C -0.15 -2.38 6.80 37.16 0.25 -2.12 16 5 C -0.17 -2.63 8.46 37.16 0.31 -2.32 16 6 N -0.58 -11.78 1.61 -160.18 -0.26 -12.03 16 7 C 0.21 5.10 3.64 -5.19 -0.02 5.08 16 8 C -0.52 -14.80 9.92 -34.44 -0.34 -15.14 16 9 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 10 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 11 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 12 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 13 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 16 C 0.54 11.27 6.03 -10.98 -0.07 11.20 16 17 O -0.55 -13.45 15.94 5.56 0.09 -13.36 16 18 C -0.20 -3.14 3.28 -91.77 -0.30 -3.44 16 19 H 0.14 2.10 3.50 -51.93 -0.18 1.92 16 20 C -0.16 -2.14 9.50 -26.73 -0.25 -2.39 16 21 C 0.05 0.71 4.47 -26.74 -0.12 0.59 16 22 H 0.12 2.00 5.20 -51.93 -0.27 1.73 16 23 O -0.35 -4.84 10.24 -35.23 -0.36 -5.20 16 24 C 0.11 1.27 1.11 -90.61 -0.10 1.17 16 25 C -0.18 -1.81 8.38 37.16 0.31 -1.50 16 26 C -0.14 -1.29 8.84 37.16 0.33 -0.97 16 27 C -0.18 -2.28 8.38 37.16 0.31 -1.97 16 28 H 0.06 0.93 6.53 -51.93 -0.34 0.59 16 29 H 0.05 0.68 6.97 -51.93 -0.36 0.32 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.13 3.52 -51.93 -0.18 0.94 16 33 H 0.08 1.45 7.60 -51.93 -0.39 1.05 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.96 6.02 -51.93 -0.31 0.65 16 36 H 0.06 0.92 5.13 -51.93 -0.27 0.66 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.04 0.90 4.49 -51.93 -0.23 0.66 16 40 H 0.03 0.81 6.91 -51.93 -0.36 0.45 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.70 6.71 -51.93 -0.35 0.36 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.98 6.53 -51.93 -0.34 0.64 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -32.70 388.19 -7.32 -40.02 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -9.10 Total: 5.60 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 0.36 Total: -10.90 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.52 Total: -38.94 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.27 Total: -18.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.70 -7.32 -40.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598833607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.754 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds