Wall clock time and date at job start Fri Apr 10 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46759 * 2 1 4 4 C 1.53002 * 109.47690 * 293.90512 * 3 2 1 5 5 C 1.53005 * 109.47061 * 173.90476 * 3 2 1 6 6 N 1.46495 * 109.47179 * 53.90888 * 3 2 1 7 7 C 1.46507 * 120.00238 * 228.63622 * 6 3 2 8 8 C 1.50696 * 109.46847 * 266.40667 * 7 6 3 9 9 H 1.08003 * 120.00528 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99713 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99570 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99899 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47030 * 90.00206 * 12 10 8 14 14 H 1.48500 * 109.46734 * 209.99635 * 12 10 8 15 15 H 1.48492 * 109.46978 * 329.99643 * 12 10 8 16 16 C 1.34773 * 120.00209 * 48.63499 * 6 3 2 17 17 O 1.21282 * 120.00689 * 183.81415 * 16 6 3 18 18 C 1.50709 * 119.99915 * 3.81660 * 16 6 3 19 19 H 1.08998 * 115.54610 * 23.08735 * 18 16 6 20 20 C 1.52998 * 117.49733 * 237.41759 * 18 16 6 21 21 C 1.52994 * 117.51837 * 168.78835 * 18 16 6 22 22 H 1.09000 * 117.50035 * 359.97438 * 21 18 16 23 23 O 1.42899 * 117.50024 * 214.97033 * 21 18 16 24 24 C 1.42896 * 114.00289 * 150.00325 * 23 21 18 25 25 C 1.53000 * 109.47562 * 59.99651 * 24 23 21 26 26 C 1.53003 * 109.47175 * 180.02562 * 24 23 21 27 27 C 1.53006 * 109.46707 * 299.99770 * 24 23 21 28 28 H 1.09003 * 109.47240 * 305.45092 * 1 2 3 29 29 H 1.09003 * 109.47293 * 65.45510 * 1 2 3 30 30 H 1.09004 * 109.46887 * 185.45152 * 1 2 3 31 31 H 1.09004 * 109.46893 * 240.00711 * 2 1 3 32 32 H 1.08995 * 109.47318 * 120.00156 * 2 1 3 33 33 H 1.08993 * 109.47251 * 184.46293 * 4 3 2 34 34 H 1.09002 * 109.46856 * 304.46289 * 4 3 2 35 35 H 1.09005 * 109.46695 * 64.45681 * 4 3 2 36 36 H 1.08992 * 109.47249 * 302.89512 * 5 3 2 37 37 H 1.09003 * 109.46715 * 62.88948 * 5 3 2 38 38 H 1.08998 * 109.47612 * 182.88799 * 5 3 2 39 39 H 1.09003 * 109.46601 * 26.40418 * 7 6 3 40 40 H 1.08992 * 109.46921 * 146.40409 * 7 6 3 41 41 H 0.97006 * 119.99496 * 180.02562 * 11 10 8 42 42 H 1.09004 * 117.50235 * 359.97438 * 20 18 16 43 43 H 1.09000 * 117.50173 * 144.97131 * 20 18 16 44 44 H 1.09008 * 109.46402 * 60.00056 * 25 24 23 45 45 H 1.09000 * 109.47479 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47333 * 300.00475 * 25 24 23 47 47 H 1.09004 * 109.46974 * 60.00010 * 26 24 23 48 48 H 1.09001 * 109.46991 * 179.97438 * 26 24 23 49 49 H 1.08998 * 109.46851 * 299.99778 * 26 24 23 50 50 H 1.08997 * 109.46933 * 60.00293 * 27 24 23 51 51 H 1.09000 * 109.46665 * 180.02562 * 27 24 23 52 52 H 1.08992 * 109.47396 * 299.99871 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6588 2.1183 -1.3187 5 6 3.5623 1.4453 0.1532 6 7 1.4356 2.1741 1.1161 7 6 0.8265 3.4868 0.8874 8 6 1.8421 4.5661 1.1607 9 1 2.8411 4.3009 1.4739 10 6 1.4958 5.8923 1.0110 11 7 2.3820 6.8343 1.2500 12 14 -0.2319 6.3510 0.4687 13 1 -1.0980 6.5171 1.6635 14 1 -0.1897 7.6251 -0.2929 15 1 -0.7813 5.2757 -0.3954 16 6 1.4398 1.6396 2.3533 17 8 0.8792 2.2125 3.2635 18 6 2.1412 0.3298 2.6059 19 1 2.9254 0.0716 1.8942 20 6 1.3105 -0.8156 3.1881 21 6 2.3401 -0.0963 4.0617 22 1 1.9641 0.5709 4.8373 23 8 3.5398 -0.8023 4.3846 24 6 3.9991 -0.5875 5.7205 25 6 2.9254 -1.0464 6.7091 26 6 5.2827 -1.3871 5.9534 27 6 4.2816 0.9017 5.9294 28 1 -0.3634 0.5961 0.8372 29 1 -0.3634 0.4269 -0.9348 30 1 -0.3633 -1.0231 0.0976 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0896 3.1189 -1.3520 34 1 2.0419 1.5299 -2.1525 35 1 0.5734 2.1873 -1.3912 36 1 3.8364 0.9188 1.0672 37 1 4.0145 0.9456 -0.7035 38 1 3.9204 2.4735 0.2047 39 1 0.4917 3.5566 -0.1475 40 1 -0.0262 3.6128 1.5545 41 1 2.1382 7.7673 1.1451 42 1 0.2568 -0.6217 3.3889 43 1 1.5479 -1.8273 2.8592 44 1 2.7242 -2.1074 6.5602 45 1 3.2759 -0.8830 7.7282 46 1 2.0112 -0.4765 6.5431 47 1 6.0475 -1.0596 5.2491 48 1 5.6333 -1.2228 6.9723 49 1 5.0819 -2.4480 5.8044 50 1 3.3674 1.4716 5.7634 51 1 4.6324 1.0655 6.9483 52 1 5.0465 1.2287 5.2252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598833607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:39 Heat of formation + Delta-G solvation = -62.705406 kcal Electronic energy + Delta-G solvation = -28675.091245 eV Core-core repulsion = 25061.744119 eV Total energy + Delta-G solvation = -3613.347126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79391 -40.04159 -38.38590 -36.92101 -35.14618 -33.67530 -33.33183 -31.28824 -30.44887 -28.42387 -28.32371 -28.22887 -25.56915 -24.38526 -23.51415 -23.31508 -21.67028 -20.94277 -19.47960 -19.11296 -17.84585 -17.58805 -17.06243 -16.52074 -16.28298 -15.83761 -15.64930 -15.41235 -15.36054 -14.81310 -14.54637 -14.46101 -14.12475 -14.03318 -13.75964 -13.60257 -13.51092 -13.29290 -13.08256 -12.94172 -12.89638 -12.86863 -12.80479 -12.69849 -12.65987 -12.44170 -12.35590 -12.11818 -11.93134 -11.86887 -11.80522 -11.56941 -11.51548 -11.37498 -10.98324 -10.82067 -10.69676 -10.06184 -9.34019 -8.33418 -6.36536 1.28919 1.33051 1.41232 1.58766 2.12095 2.29394 2.56847 2.93686 3.00699 3.61725 3.68345 3.82617 3.85709 3.94652 3.97896 4.04288 4.08266 4.12528 4.18943 4.37421 4.47641 4.59469 4.63992 4.65086 4.69681 4.76851 4.77552 4.79779 4.83956 4.86304 4.91055 4.91666 4.93645 4.97181 4.99321 5.04318 5.13944 5.15656 5.19127 5.24887 5.30337 5.35904 5.38467 5.43739 5.49843 5.53349 5.76992 6.26446 6.27583 6.63758 6.76531 7.22548 7.44927 8.83786 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.004650 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.704000 B = 6020.517713 C = 6965.625114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.157 3.843 4 C -0.149 4.149 5 C -0.163 4.163 6 N -0.579 5.579 7 C 0.222 3.778 8 C -0.523 4.523 9 H 0.025 0.975 10 C 0.012 3.988 11 N -0.947 5.947 12 Si 0.941 3.059 13 H -0.278 1.278 14 H -0.274 1.274 15 H -0.238 1.238 16 C 0.536 3.464 17 O -0.600 6.600 18 C -0.205 4.205 19 H 0.154 0.846 20 C -0.127 4.127 21 C 0.044 3.956 22 H 0.102 0.898 23 O -0.349 6.349 24 C 0.100 3.900 25 C -0.172 4.172 26 C -0.132 4.132 27 C -0.180 4.180 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.030 0.970 39 H 0.059 0.941 40 H 0.009 0.991 41 H 0.267 0.733 42 H 0.102 0.898 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.087 0.913 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -22.132 1.337 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.073 3.927 4 C -0.206 4.206 5 C -0.220 4.220 6 N -0.308 5.308 7 C 0.100 3.900 8 C -0.562 4.562 9 H 0.043 0.957 10 C -0.185 4.185 11 N -0.587 5.587 12 Si 0.764 3.236 13 H -0.204 1.204 14 H -0.199 1.199 15 H -0.161 1.161 16 C 0.325 3.675 17 O -0.482 6.482 18 C -0.225 4.225 19 H 0.171 0.829 20 C -0.165 4.165 21 C -0.015 4.015 22 H 0.119 0.881 23 O -0.269 6.269 24 C 0.062 3.938 25 C -0.230 4.230 26 C -0.189 4.189 27 C -0.238 4.238 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.157 0.843 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.110 0.890 49 H 0.091 0.909 50 H 0.056 0.944 51 H 0.105 0.895 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.836 -21.758 1.626 21.835 hybrid contribution -0.512 1.811 0.198 1.893 sum 0.324 -19.947 1.824 20.033 Atomic orbital electron populations 1.21712 0.95647 1.01865 1.01060 1.22448 0.96827 0.93575 1.05339 1.20756 0.92711 0.92855 0.86330 1.22088 1.01833 1.00890 0.95781 1.22418 0.95047 1.01441 1.03109 1.47968 1.56515 1.18509 1.07850 1.19387 0.92836 0.80645 0.97126 1.21502 0.97966 0.91322 1.45394 0.95670 1.25789 1.01622 0.96094 0.95026 1.70058 1.36854 1.00701 1.51101 0.85807 0.79552 0.78985 0.79222 1.20384 1.19935 1.16089 1.19989 0.79412 0.86028 0.82033 1.90603 1.48230 1.64792 1.44587 1.23238 1.05019 0.94091 1.00159 0.82899 1.23518 0.96666 0.96459 0.99810 1.22480 0.88684 0.98192 0.92138 0.88065 1.87836 1.39891 1.67674 1.31454 1.21811 0.95841 0.94502 0.81659 1.22427 0.98162 1.02460 0.99920 1.21770 0.93926 1.00153 1.03058 1.22500 1.01435 0.96516 1.03322 0.95624 0.92486 0.90697 0.87913 0.88949 0.93765 0.88376 0.92072 0.92016 0.88492 0.95065 0.92378 0.97298 0.92424 0.88008 0.84321 0.90674 0.89838 0.93431 0.92357 0.89043 0.90858 0.94426 0.89456 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.38 71.98 0.67 -2.77 16 2 C -0.14 -3.31 4.39 30.59 0.13 -3.17 16 3 C 0.16 4.96 0.70 3.61 0.00 4.96 16 4 C -0.15 -4.46 6.80 71.98 0.49 -3.97 16 5 C -0.16 -5.02 8.46 71.98 0.61 -4.41 16 6 N -0.58 -24.32 1.61 -779.07 -1.25 -25.58 16 7 C 0.22 11.14 3.64 85.63 0.31 11.45 16 8 C -0.52 -31.51 9.92 25.60 0.25 -31.26 16 9 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 10 C 0.01 0.74 5.47 84.66 0.46 1.20 16 11 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 12 Si 0.94 45.49 27.47 68.60 1.88 47.37 16 13 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 16 C 0.54 22.99 6.03 87.66 0.53 23.52 16 17 O -0.60 -31.40 15.94 -3.04 -0.05 -31.45 16 18 C -0.20 -6.48 3.28 -11.54 -0.04 -6.52 16 19 H 0.15 4.38 3.50 -2.39 -0.01 4.37 16 20 C -0.13 -3.12 9.50 30.59 0.29 -2.83 16 21 C 0.04 1.32 4.47 30.59 0.14 1.45 16 22 H 0.10 3.50 5.20 -2.39 -0.01 3.49 16 23 O -0.35 -9.42 10.24 -148.98 -1.53 -10.94 16 24 C 0.10 2.25 1.11 -10.79 -0.01 2.24 16 25 C -0.17 -3.29 8.38 71.98 0.60 -2.68 16 26 C -0.13 -2.21 8.84 71.98 0.64 -1.58 16 27 C -0.18 -4.70 8.38 71.98 0.60 -4.09 16 28 H 0.02 0.77 6.53 -2.39 -0.02 0.75 16 29 H 0.06 1.29 6.97 -2.39 -0.02 1.27 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.09 2.05 3.52 -2.39 -0.01 2.04 16 33 H 0.04 1.62 7.60 -2.39 -0.02 1.60 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.81 6.02 -2.38 -0.01 1.80 16 36 H 0.06 1.86 5.13 -2.39 -0.01 1.85 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 2.68 4.49 -2.39 -0.01 2.67 16 40 H 0.01 0.49 6.91 -2.39 -0.02 0.47 16 41 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 42 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 43 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.05 1.05 6.71 -2.39 -0.02 1.04 16 47 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.04 1.18 6.53 -2.39 -0.02 1.17 16 51 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -78.16 388.19 5.88 -72.29 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.83 Total: 27.53 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.69 Total: -18.46 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -0.95 Total: -86.35 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.57 Total: -42.39 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -78.16 5.88 -72.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598833607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.581 kcal (2) G-P(sol) polarization free energy of solvation -78.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds