Wall clock time and date at job start Fri Apr 10 2020 22:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47461 * 2 1 4 4 C 1.53002 * 109.47261 * 120.00611 * 2 1 3 5 5 C 1.50698 * 109.47335 * 182.55510 * 4 2 1 6 6 H 1.08002 * 120.00101 * 5.25814 * 5 4 2 7 7 C 1.37881 * 120.00358 * 185.26146 * 5 4 2 8 8 N 1.31522 * 119.99346 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00080 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47449 * 60.00131 * 9 7 5 11 11 H 1.48504 * 109.46918 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47101 * 299.99943 * 9 7 5 13 13 N 1.46902 * 109.47026 * 240.00051 * 2 1 3 14 14 C 1.46853 * 110.99690 * 70.82785 * 13 2 1 15 15 C 1.53038 * 109.52176 * 174.16063 * 14 13 2 16 16 C 1.53127 * 109.27744 * 59.17924 * 15 14 13 17 17 H 1.09000 * 109.52221 * 62.25218 * 16 15 14 18 18 C 1.50703 * 109.52030 * 182.44175 * 16 15 14 19 19 O 1.20820 * 120.00062 * 120.00525 * 18 16 15 20 20 O 1.34230 * 119.99897 * 299.99885 * 18 16 15 21 21 C 1.45202 * 116.99979 * 180.02562 * 20 18 16 22 22 C 1.52993 * 109.47156 * 59.99617 * 21 20 18 23 23 C 1.52996 * 109.47075 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.46690 * 299.99946 * 21 20 18 25 25 C 1.53121 * 109.15971 * 302.34451 * 16 15 14 26 26 H 1.08991 * 109.50392 * 297.71155 * 25 16 15 27 27 C 1.53002 * 109.50067 * 177.59664 * 25 16 15 28 28 C 1.46853 * 111.00074 * 306.61923 * 13 2 1 29 29 H 1.09008 * 109.46646 * 299.99979 * 1 2 3 30 30 H 1.08998 * 109.47157 * 59.99267 * 1 2 3 31 31 H 1.08996 * 109.47461 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46711 * 302.55020 * 4 2 1 33 33 H 1.09001 * 109.47241 * 62.54989 * 4 2 1 34 34 H 0.97003 * 119.99385 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.45971 * 294.17771 * 14 13 2 36 36 H 1.08996 * 109.46037 * 54.15823 * 14 13 2 37 37 H 1.08995 * 109.50585 * 179.12191 * 15 14 13 38 38 H 1.09001 * 109.50433 * 299.20162 * 15 14 13 39 39 H 1.09004 * 109.47516 * 60.00336 * 22 21 20 40 40 H 1.09005 * 109.47095 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47438 * 300.00382 * 22 21 20 42 42 H 1.08995 * 109.47124 * 59.99564 * 23 21 20 43 43 H 1.09003 * 109.47085 * 179.97438 * 23 21 20 44 44 H 1.08997 * 109.47002 * 299.99640 * 23 21 20 45 45 H 1.08996 * 109.47106 * 60.00031 * 24 21 20 46 46 H 1.09003 * 109.47194 * 180.02562 * 24 21 20 47 47 H 1.08999 * 109.46750 * 299.99732 * 24 21 20 48 48 H 1.08997 * 109.47238 * 59.99687 * 27 25 16 49 49 H 1.08998 * 109.46845 * 180.02562 * 27 25 16 50 50 H 1.09001 * 109.47091 * 299.99928 * 27 25 16 51 51 H 1.08994 * 109.46014 * 305.85509 * 28 13 2 52 52 H 1.09004 * 109.45835 * 65.82087 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5457 -0.6668 1.2813 6 1 4.0814 -0.0960 0.5372 7 6 4.2395 -1.3456 2.2605 8 7 3.5871 -2.0403 3.1669 9 14 6.1058 -1.2784 2.2998 10 1 6.5473 0.1305 2.4586 11 1 6.6063 -2.0861 3.4411 12 1 6.6477 -1.8269 1.0307 13 7 2.0196 -0.6925 -1.1995 14 6 1.7705 0.1059 -2.4066 15 6 2.4202 -0.5752 -3.6133 16 6 1.8332 -1.9799 -3.7776 17 1 0.7636 -1.9070 -3.9745 18 6 2.5120 -2.6779 -4.9279 19 8 3.1131 -3.7088 -4.7391 20 8 2.4486 -2.1543 -6.1623 21 6 3.1251 -2.8807 -7.2220 22 6 2.5281 -4.2844 -7.3396 23 6 2.9444 -2.1363 -8.5464 24 6 4.6163 -2.9864 -6.8962 25 6 2.0634 -2.7746 -2.4892 26 1 3.1338 -2.8807 -2.3134 27 6 1.4271 -4.1596 -2.6228 28 6 1.4241 -2.0298 -1.3151 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6398 -0.2347 2.1386 33 1 1.7145 -1.7614 1.2265 34 1 4.0753 -2.5181 3.8557 35 1 0.6963 0.1894 -2.5714 36 1 2.1968 1.1008 -2.2782 37 1 2.2219 0.0095 -4.5115 38 1 3.4964 -0.6461 -3.4554 39 1 1.4657 -4.2092 -7.5717 40 1 3.0362 -4.8299 -8.1349 41 1 2.6572 -4.8145 -6.3960 42 1 3.3700 -1.1365 -8.4622 43 1 3.4526 -2.6814 -9.3418 44 1 1.8821 -2.0607 -8.7786 45 1 4.7454 -3.5165 -5.9526 46 1 5.1243 -3.5313 -7.6920 47 1 5.0416 -1.9863 -6.8124 48 1 1.8803 -4.6883 -3.4614 49 1 1.5909 -4.7247 -1.7053 50 1 0.3565 -4.0524 -2.7969 51 1 1.5984 -2.5859 -0.3940 52 1 0.3514 -1.9362 -1.4851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599589521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:07 Heat of formation + Delta-G solvation = -102.880767 kcal Electronic energy + Delta-G solvation = -28163.468902 eV Core-core repulsion = 24548.379642 eV Total energy + Delta-G solvation = -3615.089260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07256 -39.08631 -37.13032 -35.04966 -34.15649 -32.63781 -31.87119 -29.85666 -27.62608 -27.57406 -27.30357 -26.64446 -25.03551 -23.11574 -22.36684 -21.32870 -19.99752 -19.42314 -18.70430 -17.21271 -16.60371 -16.12266 -15.95966 -15.26783 -14.65889 -14.56422 -14.50399 -14.28768 -14.10065 -13.72093 -13.54615 -13.26935 -12.86034 -12.71293 -12.49137 -12.26532 -12.15376 -12.10409 -11.98867 -11.84642 -11.77722 -11.64293 -11.52900 -11.40615 -11.26196 -11.00210 -10.87221 -10.64105 -10.54744 -10.44375 -10.40517 -10.27871 -10.12459 -9.88214 -9.55698 -9.12396 -8.94079 -8.21517 -7.43262 -5.84951 -3.82172 2.29206 2.65587 3.44081 3.47738 3.51750 4.47319 4.51755 4.55496 4.59600 4.60942 4.71101 4.85649 4.90313 5.24794 5.26846 5.32374 5.39136 5.46561 5.52091 5.52546 5.59468 5.64373 5.65350 5.70586 5.76654 5.77832 5.80763 5.87068 5.90046 5.94874 6.01949 6.05531 6.06630 6.12559 6.15458 6.26885 6.32027 6.40531 6.49838 6.61216 6.66906 6.70212 6.80608 7.01257 7.56443 7.71402 7.90385 7.94949 8.05305 8.16236 8.61661 9.22875 9.79174 11.27075 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.003750 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.681213 B = 7464.540723 C = 8158.450787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.510 5.510 14 C 0.055 3.945 15 C -0.105 4.105 16 C -0.075 4.075 17 H 0.099 0.901 18 C 0.471 3.529 19 O -0.496 6.496 20 O -0.352 6.352 21 C 0.115 3.885 22 C -0.182 4.182 23 C -0.140 4.140 24 C -0.183 4.183 25 C -0.070 4.070 26 H 0.090 0.910 27 C -0.155 4.155 28 C 0.065 3.935 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.014 0.986 33 H 0.023 0.977 34 H 0.257 0.743 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.044 0.956 51 H 0.093 0.907 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -0.480 -21.540 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.234 5.234 14 C -0.074 4.074 15 C -0.143 4.143 16 C -0.094 4.094 17 H 0.117 0.883 18 C 0.314 3.686 19 O -0.384 6.384 20 O -0.270 6.270 21 C 0.079 3.921 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.241 4.241 25 C -0.089 4.089 26 H 0.108 0.892 27 C -0.212 4.212 28 C -0.063 4.063 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.063 0.937 51 H 0.112 0.888 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.671 -0.959 -21.319 21.845 hybrid contribution 0.218 -0.034 -0.094 0.240 sum -4.453 -0.993 -21.412 21.893 Atomic orbital electron populations 1.22527 0.99799 1.01358 1.00614 1.21901 0.89997 0.98228 0.91909 0.91326 1.19196 0.96371 0.95493 0.89651 1.21098 0.91443 1.29112 1.10945 0.92292 1.24981 0.97904 0.95911 0.95992 1.69954 1.35164 1.33118 1.16329 0.86717 0.86583 0.77756 0.77251 1.20560 1.21703 1.20368 1.62032 1.58456 1.01740 1.01132 1.22056 0.97414 0.97398 0.90492 1.21570 1.01618 0.92739 0.98332 1.21293 1.00437 0.96785 0.90878 0.88341 1.23798 0.77963 0.83468 0.83329 1.90525 1.39801 1.23620 1.84412 1.86568 1.69755 1.53189 1.17500 1.22128 0.92249 0.91786 0.85902 1.22487 1.01009 0.95967 1.04502 1.21839 1.02992 1.00955 0.93917 1.22491 0.94079 1.03086 1.04402 1.21069 1.02749 0.93778 0.91304 0.89197 1.21975 0.99513 0.96638 1.03089 1.22132 0.94678 0.90850 0.98675 0.92593 0.94198 0.92801 0.96755 0.95925 0.93318 0.95514 0.90737 0.90974 0.90513 0.92171 0.91274 0.89667 0.91482 0.90572 0.91610 0.89582 0.91320 0.91977 0.90995 0.92148 0.93708 0.88834 0.95703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.44 37.16 0.31 -2.76 16 2 C 0.09 1.73 2.28 -67.71 -0.15 1.58 16 3 H 0.07 1.38 7.97 -51.93 -0.41 0.96 16 4 C 0.03 0.75 4.35 -27.88 -0.12 0.63 16 5 C -0.49 -13.57 8.77 -34.44 -0.30 -13.88 16 6 H 0.06 1.64 7.75 -52.49 -0.41 1.23 16 7 C 0.05 1.48 5.46 -17.81 -0.10 1.38 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.51 -9.39 4.25 -226.68 -0.96 -10.36 16 14 C 0.05 0.81 5.15 -3.83 -0.02 0.79 16 15 C -0.10 -1.40 5.31 -26.65 -0.14 -1.54 16 16 C -0.07 -1.01 2.20 -91.64 -0.20 -1.21 16 17 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 18 C 0.47 6.45 6.29 36.01 0.23 6.67 16 19 O -0.50 -7.61 9.32 -18.75 -0.17 -7.78 16 20 O -0.35 -4.35 9.82 -39.26 -0.39 -4.74 16 21 C 0.12 1.19 1.13 -90.62 -0.10 1.09 16 22 C -0.18 -1.80 8.37 37.15 0.31 -1.49 16 23 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 24 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 25 C -0.07 -1.10 2.02 -90.54 -0.18 -1.29 16 26 H 0.09 1.66 8.05 -51.93 -0.42 1.24 16 27 C -0.15 -2.22 8.91 37.16 0.33 -1.88 16 28 C 0.06 1.12 3.81 -3.83 -0.01 1.11 16 29 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.04 0.58 6.84 -51.93 -0.36 0.23 16 31 H 0.05 0.90 6.45 -51.93 -0.34 0.56 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.60 6.35 -51.93 -0.33 0.27 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.03 0.37 6.90 -51.93 -0.36 0.01 16 36 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.02 5.89 -51.93 -0.31 0.72 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 1.12 5.89 -51.93 -0.31 0.81 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 1.05 5.73 -51.93 -0.30 0.76 16 49 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.09 1.92 6.20 -51.93 -0.32 1.59 16 52 H 0.02 0.40 6.57 -51.93 -0.34 0.06 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -30.27 388.13 -9.13 -39.40 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -9.66 Total: 0.09 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 0.48 Total: -13.17 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.23 Total: -36.91 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.56 Total: -12.52 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.27 -9.13 -39.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599589521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.481 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds