Wall clock time and date at job start Fri Apr 10 2020 22:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47461 * 2 1 4 4 C 1.53002 * 109.47261 * 120.00611 * 2 1 3 5 5 C 1.50698 * 109.47335 * 182.55510 * 4 2 1 6 6 H 1.08002 * 120.00101 * 5.25814 * 5 4 2 7 7 C 1.37881 * 120.00358 * 185.26146 * 5 4 2 8 8 N 1.31522 * 119.99346 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00080 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47449 * 60.00131 * 9 7 5 11 11 H 1.48504 * 109.46918 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47101 * 299.99943 * 9 7 5 13 13 N 1.46902 * 109.47026 * 240.00051 * 2 1 3 14 14 C 1.46853 * 110.99690 * 70.82785 * 13 2 1 15 15 C 1.53038 * 109.52176 * 174.16063 * 14 13 2 16 16 C 1.53127 * 109.27744 * 59.17924 * 15 14 13 17 17 H 1.09000 * 109.52221 * 62.25218 * 16 15 14 18 18 C 1.50703 * 109.52030 * 182.44175 * 16 15 14 19 19 O 1.20820 * 120.00062 * 120.00525 * 18 16 15 20 20 O 1.34230 * 119.99897 * 299.99885 * 18 16 15 21 21 C 1.45202 * 116.99979 * 180.02562 * 20 18 16 22 22 C 1.52993 * 109.47156 * 59.99617 * 21 20 18 23 23 C 1.52996 * 109.47075 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.46690 * 299.99946 * 21 20 18 25 25 C 1.53121 * 109.15971 * 302.34451 * 16 15 14 26 26 H 1.08991 * 109.50392 * 297.71155 * 25 16 15 27 27 C 1.53002 * 109.50067 * 177.59664 * 25 16 15 28 28 C 1.46853 * 111.00074 * 306.61923 * 13 2 1 29 29 H 1.09008 * 109.46646 * 299.99979 * 1 2 3 30 30 H 1.08998 * 109.47157 * 59.99267 * 1 2 3 31 31 H 1.08996 * 109.47461 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46711 * 302.55020 * 4 2 1 33 33 H 1.09001 * 109.47241 * 62.54989 * 4 2 1 34 34 H 0.97003 * 119.99385 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.45971 * 294.17771 * 14 13 2 36 36 H 1.08996 * 109.46037 * 54.15823 * 14 13 2 37 37 H 1.08995 * 109.50585 * 179.12191 * 15 14 13 38 38 H 1.09001 * 109.50433 * 299.20162 * 15 14 13 39 39 H 1.09004 * 109.47516 * 60.00336 * 22 21 20 40 40 H 1.09005 * 109.47095 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47438 * 300.00382 * 22 21 20 42 42 H 1.08995 * 109.47124 * 59.99564 * 23 21 20 43 43 H 1.09003 * 109.47085 * 179.97438 * 23 21 20 44 44 H 1.08997 * 109.47002 * 299.99640 * 23 21 20 45 45 H 1.08996 * 109.47106 * 60.00031 * 24 21 20 46 46 H 1.09003 * 109.47194 * 180.02562 * 24 21 20 47 47 H 1.08999 * 109.46750 * 299.99732 * 24 21 20 48 48 H 1.08997 * 109.47238 * 59.99687 * 27 25 16 49 49 H 1.08998 * 109.46845 * 180.02562 * 27 25 16 50 50 H 1.09001 * 109.47091 * 299.99928 * 27 25 16 51 51 H 1.08994 * 109.46014 * 305.85509 * 28 13 2 52 52 H 1.09004 * 109.45835 * 65.82087 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5457 -0.6668 1.2813 6 1 4.0814 -0.0960 0.5372 7 6 4.2395 -1.3456 2.2605 8 7 3.5871 -2.0403 3.1669 9 14 6.1058 -1.2784 2.2998 10 1 6.5473 0.1305 2.4586 11 1 6.6063 -2.0861 3.4411 12 1 6.6477 -1.8269 1.0307 13 7 2.0196 -0.6925 -1.1995 14 6 1.7705 0.1059 -2.4066 15 6 2.4202 -0.5752 -3.6133 16 6 1.8332 -1.9799 -3.7776 17 1 0.7636 -1.9070 -3.9745 18 6 2.5120 -2.6779 -4.9279 19 8 3.1131 -3.7088 -4.7391 20 8 2.4486 -2.1543 -6.1623 21 6 3.1251 -2.8807 -7.2220 22 6 2.5281 -4.2844 -7.3396 23 6 2.9444 -2.1363 -8.5464 24 6 4.6163 -2.9864 -6.8962 25 6 2.0634 -2.7746 -2.4892 26 1 3.1338 -2.8807 -2.3134 27 6 1.4271 -4.1596 -2.6228 28 6 1.4241 -2.0298 -1.3151 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6398 -0.2347 2.1386 33 1 1.7145 -1.7614 1.2265 34 1 4.0753 -2.5181 3.8557 35 1 0.6963 0.1894 -2.5714 36 1 2.1968 1.1008 -2.2782 37 1 2.2219 0.0095 -4.5115 38 1 3.4964 -0.6461 -3.4554 39 1 1.4657 -4.2092 -7.5717 40 1 3.0362 -4.8299 -8.1349 41 1 2.6572 -4.8145 -6.3960 42 1 3.3700 -1.1365 -8.4622 43 1 3.4526 -2.6814 -9.3418 44 1 1.8821 -2.0607 -8.7786 45 1 4.7454 -3.5165 -5.9526 46 1 5.1243 -3.5313 -7.6920 47 1 5.0416 -1.9863 -6.8124 48 1 1.8803 -4.6883 -3.4614 49 1 1.5909 -4.7247 -1.7053 50 1 0.3565 -4.0524 -2.7969 51 1 1.5984 -2.5859 -0.3940 52 1 0.3514 -1.9362 -1.4851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599589521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:07 Heat of formation + Delta-G solvation = -119.130712 kcal Electronic energy + Delta-G solvation = -28164.173552 eV Core-core repulsion = 24548.379642 eV Total energy + Delta-G solvation = -3615.793910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10923 -40.35298 -38.20814 -36.46225 -35.04762 -34.60087 -33.20329 -31.36411 -29.14044 -28.37251 -28.27642 -27.86271 -26.34630 -25.04017 -23.45527 -22.61203 -21.23968 -20.48131 -20.13561 -18.35138 -18.24205 -17.51729 -16.97695 -16.65817 -16.48794 -15.81477 -15.66765 -15.41524 -15.20687 -14.95730 -14.60301 -14.47501 -14.37627 -13.84851 -13.65267 -13.60543 -13.24186 -13.20302 -13.10044 -12.94616 -12.88383 -12.84578 -12.81736 -12.64479 -12.52463 -12.42848 -12.40914 -12.28408 -12.00672 -11.78118 -11.76219 -11.48557 -11.38850 -11.31679 -11.07161 -10.91735 -10.62585 -10.45015 -8.82562 -8.08219 -6.11595 1.24412 1.40320 1.43416 1.50157 1.71354 2.47834 3.11844 3.29191 3.50456 3.72925 3.75359 3.78221 3.83274 3.97701 4.10752 4.20143 4.32930 4.39354 4.41994 4.52972 4.56489 4.60044 4.60609 4.63697 4.72548 4.75192 4.76861 4.82979 4.86286 4.88569 4.89428 4.91124 5.01346 5.08664 5.12832 5.19038 5.25032 5.25612 5.27069 5.29862 5.32194 5.33901 5.44661 5.54177 5.65653 5.74504 5.92500 6.35943 6.51940 6.60396 6.88687 7.02037 7.53484 9.03651 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.003750 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.681213 B = 7464.540723 C = 8158.450787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.067 0.933 4 C 0.035 3.965 5 C -0.494 4.494 6 H 0.056 0.944 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.536 5.536 14 C 0.056 3.944 15 C -0.097 4.097 16 C -0.069 4.069 17 H 0.124 0.876 18 C 0.473 3.527 19 O -0.518 6.518 20 O -0.351 6.351 21 C 0.106 3.894 22 C -0.180 4.180 23 C -0.135 4.135 24 C -0.182 4.182 25 C -0.064 4.064 26 H 0.052 0.948 27 C -0.148 4.148 28 C 0.074 3.926 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.050 0.950 32 H -0.011 1.011 33 H -0.002 1.002 34 H 0.257 0.743 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.046 0.954 50 H 0.067 0.933 51 H 0.050 0.950 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 0.687 -24.597 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.002 4.002 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.260 5.260 14 C -0.071 4.071 15 C -0.135 4.135 16 C -0.088 4.088 17 H 0.142 0.858 18 C 0.317 3.683 19 O -0.407 6.407 20 O -0.269 6.269 21 C 0.070 3.930 22 C -0.237 4.237 23 C -0.192 4.192 24 C -0.239 4.239 25 C -0.083 4.083 26 H 0.070 0.930 27 C -0.205 4.205 28 C -0.054 4.054 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.008 0.992 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.069 0.931 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.348 0.230 -24.396 24.977 hybrid contribution 0.448 -0.417 0.822 1.025 sum -4.900 -0.187 -23.574 24.078 Atomic orbital electron populations 1.22385 0.97032 1.01643 1.02165 1.21591 0.92167 0.97121 0.90342 0.91455 1.19063 0.95031 0.94463 0.91653 1.21444 0.93106 1.28349 1.10355 0.92575 1.25789 1.02491 0.95829 0.95861 1.70084 1.36848 1.34206 1.17120 0.85721 0.81220 0.78253 0.77123 1.19281 1.21356 1.20278 1.61884 1.59532 1.02470 1.02150 1.22127 0.98994 0.97010 0.88983 1.21526 1.00101 0.92921 0.98944 1.21210 1.01931 0.96199 0.89507 0.85797 1.23747 0.77539 0.83084 0.83906 1.90540 1.40661 1.24666 1.84832 1.86549 1.69799 1.53320 1.17231 1.22462 0.91719 0.92427 0.86386 1.22456 1.01751 0.95657 1.03823 1.21857 1.03805 1.00946 0.92573 1.22469 0.94879 1.02910 1.03652 1.20906 1.00302 0.94839 0.92295 0.92988 1.21903 1.00751 0.95603 1.02251 1.21956 0.95940 0.90201 0.97335 0.92547 0.91092 0.93118 0.99236 0.98417 0.93403 0.93192 0.90259 0.87991 0.92706 0.91451 0.89331 0.92232 0.91299 0.88493 0.90944 0.92532 0.89239 0.92009 0.91295 0.93499 0.91443 0.93104 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 8.44 71.98 0.61 -4.90 16 2 C 0.10 3.79 2.28 44.92 0.10 3.89 16 3 H 0.07 2.66 7.97 -2.39 -0.02 2.64 16 4 C 0.04 1.82 4.35 29.85 0.13 1.95 16 5 C -0.49 -28.32 8.77 25.60 0.22 -28.10 16 6 H 0.06 3.18 7.75 -2.91 -0.02 3.16 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 9 Si 0.95 46.64 29.54 68.60 2.03 48.67 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 N -0.54 -19.56 4.25 -871.10 -3.70 -23.26 16 14 C 0.06 1.53 5.15 86.33 0.44 1.97 16 15 C -0.10 -2.39 5.31 30.65 0.16 -2.23 16 16 C -0.07 -1.75 2.20 -11.46 -0.03 -1.78 16 17 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 18 C 0.47 12.44 6.29 71.24 0.45 12.89 16 19 O -0.52 -16.03 9.32 21.98 0.20 -15.82 16 20 O -0.35 -7.94 9.82 -51.41 -0.50 -8.44 16 21 C 0.11 1.96 1.13 -10.80 -0.01 1.95 16 22 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 23 C -0.13 -1.63 8.85 71.98 0.64 -1.00 16 24 C -0.18 -3.62 8.37 71.98 0.60 -3.02 16 25 C -0.06 -2.04 2.02 -10.74 -0.02 -2.06 16 26 H 0.05 2.03 8.05 -2.39 -0.02 2.01 16 27 C -0.15 -4.24 8.91 71.98 0.64 -3.60 16 28 C 0.07 2.57 3.81 86.32 0.33 2.90 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.07 1.82 6.84 -2.39 -0.02 1.81 16 31 H 0.05 1.63 6.45 -2.39 -0.02 1.62 16 32 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 33 H 0.00 -0.14 6.35 -2.39 -0.02 -0.15 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.05 1.16 6.90 -2.39 -0.02 1.14 16 36 H 0.08 2.09 8.01 -2.39 -0.02 2.07 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.06 1.40 5.89 -2.38 -0.01 1.39 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 1.48 5.89 -2.39 -0.01 1.47 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 2.04 5.73 -2.39 -0.01 2.03 16 49 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.05 2.20 6.20 -2.39 -0.01 2.19 16 52 H 0.05 1.41 6.57 -2.38 -0.02 1.39 16 Total: -1.00 -68.38 388.13 4.51 -63.87 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.86 Total: 16.84 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 5.33 Total: -23.52 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.41 Total: -81.59 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.30 Total: -24.27 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -68.38 4.51 -63.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599589521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.263 kcal (2) G-P(sol) polarization free energy of solvation -68.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds