Wall clock time and date at job start Fri Apr 10 2020 22:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.53399 * 2 1 4 4 C 1.53030 * 109.50578 * 120.09834 * 2 1 3 5 5 N 1.46846 * 109.52377 * 60.76568 * 4 2 1 6 6 C 1.46909 * 111.00162 * 185.84294 * 5 4 2 7 7 C 1.53002 * 109.46665 * 301.83101 * 6 5 4 8 8 C 1.52997 * 109.46764 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46941 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00173 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00195 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00074 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99755 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46960 * 90.00204 * 13 11 9 15 15 H 1.48495 * 109.46770 * 210.00112 * 13 11 9 16 16 H 1.48504 * 109.46919 * 329.99858 * 13 11 9 17 17 C 1.46846 * 111.19997 * 61.74000 * 5 4 2 18 18 C 1.53036 * 109.52162 * 298.26076 * 17 5 4 19 19 C 1.53118 * 109.28007 * 59.18140 * 18 17 5 20 20 H 1.08993 * 109.52399 * 62.24659 * 19 18 17 21 21 C 1.50693 * 109.52178 * 182.44186 * 19 18 17 22 22 O 1.20830 * 120.00401 * 120.00106 * 21 19 18 23 23 O 1.34228 * 119.99757 * 299.99372 * 21 19 18 24 24 C 1.45206 * 117.00048 * 180.02562 * 23 21 19 25 25 C 1.52998 * 109.47392 * 60.00006 * 24 23 21 26 26 C 1.53005 * 109.47052 * 180.02562 * 24 23 21 27 27 C 1.53005 * 109.46920 * 300.00069 * 24 23 21 28 28 H 1.09002 * 109.46930 * 180.09999 * 1 2 3 29 29 H 1.09001 * 109.47276 * 300.09503 * 1 2 3 30 30 H 1.09004 * 109.47461 * 60.09999 * 1 2 3 31 31 H 1.08999 * 109.46586 * 300.74594 * 4 2 1 32 32 H 1.08998 * 109.46592 * 180.77942 * 4 2 1 33 33 H 1.09000 * 109.47118 * 61.82904 * 6 5 4 34 34 H 1.08998 * 109.47002 * 181.83489 * 6 5 4 35 35 H 1.09001 * 109.47440 * 300.00246 * 7 6 5 36 36 H 1.09007 * 109.47189 * 60.00239 * 7 6 5 37 37 H 1.09000 * 109.46990 * 299.99785 * 8 7 6 38 38 H 1.08998 * 109.47030 * 60.00310 * 8 7 6 39 39 H 0.97003 * 119.99736 * 179.97438 * 12 11 9 40 40 H 1.08998 * 109.45759 * 58.27846 * 17 5 4 41 41 H 1.09003 * 109.46299 * 178.25316 * 17 5 4 42 42 H 1.09008 * 109.49869 * 179.11730 * 18 17 5 43 43 H 1.09002 * 109.50237 * 299.19577 * 18 17 5 44 44 H 1.08995 * 109.46957 * 59.99579 * 25 24 23 45 45 H 1.08994 * 109.47268 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.46501 * 300.00366 * 25 24 23 47 47 H 1.08999 * 109.47302 * 59.99793 * 26 24 23 48 48 H 1.09002 * 109.46740 * 179.97438 * 26 24 23 49 49 H 1.08993 * 109.46850 * 299.99307 * 26 24 23 50 50 H 1.08999 * 109.46998 * 59.99908 * 27 24 23 51 51 H 1.08996 * 109.46990 * 180.02562 * 27 24 23 52 52 H 1.09003 * 109.46369 * 299.99891 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7234 1.2480 5 7 1.5676 -2.1134 1.2378 6 6 1.9224 -2.7996 2.4874 7 6 3.4400 -2.7604 2.6776 8 6 3.8096 -3.4755 3.9787 9 6 5.3043 -3.4364 4.1663 10 1 5.9283 -2.9498 3.4312 11 6 5.8754 -4.0219 5.2763 12 7 7.1799 -3.9873 5.4402 13 14 4.7961 -4.8630 6.5480 14 1 4.6289 -6.2937 6.1868 15 1 5.4351 -4.7613 7.8846 16 1 3.4665 -4.2026 6.5834 17 6 2.0847 -2.8419 0.0723 18 6 1.5750 -2.1817 -1.2108 19 6 2.0412 -0.7237 -1.2488 20 1 3.1304 -0.6900 -1.2690 21 6 1.4922 -0.0514 -2.4806 22 8 0.7710 0.9120 -2.3726 23 8 1.8046 -0.5228 -3.6980 24 6 1.2404 0.1749 -4.8397 25 6 1.7090 1.6313 -4.8301 26 6 1.7040 -0.5021 -6.1312 27 6 -0.2870 0.1301 -4.7609 28 1 -0.3633 -1.0277 0.0018 29 1 -0.3634 0.5153 0.8891 30 1 -0.3634 0.5123 -0.8909 31 1 1.6670 -0.2189 2.1389 32 1 3.1308 -0.7109 1.2544 33 1 1.4381 -2.2999 3.3264 34 1 1.5888 -3.8362 2.4401 35 1 3.9244 -3.2600 1.8385 36 1 3.7737 -1.7237 2.7249 37 1 3.3252 -2.9763 4.8178 38 1 3.4760 -4.5121 3.9308 39 1 7.5816 -4.3989 6.2214 40 1 3.1744 -2.8195 0.0842 41 1 1.7423 -3.8761 0.1092 42 1 1.9717 -2.7133 -2.0759 43 1 0.4857 -2.2167 -1.2301 44 1 2.7971 1.6632 -4.8862 45 1 1.2852 2.1550 -5.6869 46 1 1.3784 2.1132 -3.9101 47 1 1.3698 -1.5396 -6.1378 48 1 1.2801 0.0213 -6.9882 49 1 2.7920 -0.4705 -6.1875 50 1 -0.6176 0.6120 -3.8409 51 1 -0.7105 0.6533 -5.6182 52 1 -0.6208 -0.9076 -4.7678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599590193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:21 Heat of formation + Delta-G solvation = -104.478277 kcal Electronic energy + Delta-G solvation = -27331.142171 eV Core-core repulsion = 23715.983637 eV Total energy + Delta-G solvation = -3615.158533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31951 -39.40076 -37.27589 -35.16793 -34.32018 -33.05941 -31.72469 -31.02934 -27.73603 -27.72194 -27.55019 -26.91974 -24.93066 -22.87508 -22.75056 -21.46348 -20.35949 -19.76689 -18.45592 -17.34013 -16.85972 -16.64313 -16.22802 -15.67996 -15.04677 -14.79518 -14.55297 -14.42201 -14.19833 -14.01582 -13.89436 -13.62858 -13.29774 -12.90681 -12.71228 -12.59398 -12.45452 -12.23573 -12.23000 -12.17463 -11.86777 -11.73058 -11.62890 -11.47002 -11.36662 -11.23599 -11.00461 -10.95183 -10.71244 -10.66712 -10.53712 -10.34131 -9.90760 -9.81858 -9.74408 -9.65338 -9.22925 -8.54345 -7.91023 -6.04943 -4.02970 2.08335 2.48006 3.30239 3.37759 3.41561 4.11866 4.33385 4.40931 4.43279 4.44750 4.55698 4.60245 4.65622 5.03369 5.12279 5.14819 5.20373 5.28801 5.31108 5.36446 5.37735 5.41375 5.50633 5.50878 5.53140 5.59741 5.63953 5.67052 5.77017 5.82085 5.86054 5.90348 5.92853 5.95849 6.00610 6.09386 6.14047 6.15990 6.26641 6.40859 6.46274 6.59664 6.63723 6.85877 7.26648 7.28128 7.33059 7.43719 7.71078 7.79185 8.53506 8.99651 9.57773 11.08603 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.002518 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.396813 B =11115.419915 C =11441.186992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 H 0.077 0.923 4 C 0.056 3.944 5 N -0.535 5.535 6 C 0.051 3.949 7 C -0.138 4.138 8 C -0.010 4.010 9 C -0.520 4.520 10 H 0.069 0.931 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.265 1.265 17 C 0.053 3.947 18 C -0.106 4.106 19 C -0.079 4.079 20 H 0.104 0.896 21 C 0.472 3.528 22 O -0.498 6.498 23 O -0.350 6.350 24 C 0.115 3.885 25 C -0.183 4.183 26 C -0.141 4.141 27 C -0.182 4.182 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.071 8.222 -21.759 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 H 0.095 0.905 4 C -0.072 4.072 5 N -0.259 5.259 6 C -0.076 4.076 7 C -0.177 4.177 8 C -0.048 4.048 9 C -0.558 4.558 10 H 0.087 0.913 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.076 4.076 18 C -0.144 4.144 19 C -0.099 4.099 20 H 0.122 0.878 21 C 0.316 3.684 22 O -0.386 6.386 23 O -0.268 6.268 24 C 0.079 3.921 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.239 4.239 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.103 0.897 51 H 0.088 0.912 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.678 8.476 -21.691 28.074 hybrid contribution 0.603 -0.411 0.752 1.048 sum -15.075 8.065 -20.939 27.032 Atomic orbital electron populations 1.22034 0.93889 1.02647 1.02360 1.21039 0.97750 0.98320 0.91658 0.90508 1.22132 0.98207 0.89361 0.97477 1.62236 1.59071 1.01849 1.02715 1.22348 0.95952 0.98757 0.90587 1.22077 0.94389 1.00973 1.00236 1.19495 0.97412 0.95036 0.92902 1.21157 0.90508 1.36326 1.07828 0.91284 1.25057 0.94847 0.95800 0.97918 1.69923 1.09875 1.45428 1.29166 0.86757 0.81257 0.80202 0.80942 1.20322 1.21430 1.18963 1.22072 0.98194 0.97816 0.89479 1.21616 1.02204 0.92182 0.98359 1.21253 1.02031 0.96971 0.89607 0.87773 1.23700 0.77927 0.82102 0.84657 1.90493 1.34599 1.26604 1.86869 1.86579 1.68388 1.56925 1.14878 1.22163 0.93584 0.92170 0.84135 1.22484 1.01825 0.95167 1.04520 1.21851 1.02468 1.01372 0.94121 1.22485 0.94016 1.02920 1.04505 0.91737 0.93203 0.90953 0.90238 0.93793 0.91028 0.91110 0.92819 0.92627 0.96667 0.97127 0.92770 0.93777 0.90305 0.90544 0.90510 0.92030 0.91192 0.89741 0.91444 0.90487 0.91458 0.89727 0.91235 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.40 37.16 0.31 -1.47 16 2 C -0.07 -0.80 2.42 -90.54 -0.22 -1.01 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.06 0.73 4.27 -3.84 -0.02 0.71 16 5 N -0.54 -7.22 4.14 -234.67 -0.97 -8.19 16 6 C 0.05 0.79 5.36 -3.82 -0.02 0.77 16 7 C -0.14 -2.63 4.45 -26.73 -0.12 -2.75 16 8 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 9 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 10 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 11 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 13 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 17 C 0.05 0.65 5.05 -3.84 -0.02 0.63 16 18 C -0.11 -1.11 4.95 -26.65 -0.13 -1.24 16 19 C -0.08 -0.86 2.48 -91.65 -0.23 -1.09 16 20 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 21 C 0.47 5.32 6.27 36.00 0.23 5.54 16 22 O -0.50 -6.17 9.03 -18.75 -0.17 -6.34 16 23 O -0.35 -3.73 9.82 -39.25 -0.39 -4.12 16 24 C 0.12 1.01 1.13 -90.62 -0.10 0.90 16 25 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 26 C -0.14 -0.93 8.85 37.16 0.33 -0.60 16 27 C -0.18 -1.52 8.37 37.16 0.31 -1.21 16 28 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.89 5.34 -51.93 -0.28 0.61 16 31 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 32 H 0.04 0.62 6.61 -51.93 -0.34 0.27 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.05 1.04 6.68 -51.93 -0.35 0.69 16 36 H 0.06 1.08 6.51 -51.92 -0.34 0.75 16 37 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 41 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 42 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 43 H 0.08 0.83 6.59 -51.93 -0.34 0.48 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.88 5.89 -51.93 -0.31 0.57 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.86 5.89 -51.93 -0.31 0.56 16 51 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -30.87 383.99 -9.15 -40.02 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -9.61 Total: -1.15 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.20 Total: -35.52 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.55 Total: -10.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.87 -9.15 -40.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599590193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.456 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds