Wall clock time and date at job start Fri Apr 10 2020 22:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 116.99919 * 2 1 4 4 O 1.20823 * 120.00253 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00149 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47349 * 59.99428 * 5 3 2 7 7 C 1.53008 * 109.46805 * 299.99803 * 5 3 2 8 8 C 1.52999 * 109.47359 * 179.97438 * 5 3 2 9 9 H 1.08997 * 109.50176 * 179.91658 * 8 5 3 10 10 C 1.53122 * 109.50256 * 299.99709 * 8 5 3 11 11 C 1.53113 * 109.15786 * 177.59329 * 10 8 5 12 12 C 1.53033 * 109.28497 * 302.34629 * 11 10 8 13 13 N 1.46847 * 109.52213 * 59.17694 * 12 11 10 14 14 C 1.46903 * 111.00182 * 174.16520 * 13 12 11 15 15 C 1.52990 * 109.47268 * 176.21971 * 14 13 12 16 16 H 1.08998 * 109.47281 * 301.96457 * 15 14 13 17 17 C 1.53009 * 109.47138 * 61.96350 * 15 14 13 18 18 C 1.53000 * 109.47332 * 181.96014 * 15 14 13 19 19 C 1.50700 * 109.47353 * 175.00114 * 18 15 14 20 20 H 1.08002 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.37875 * 120.00136 * 180.02562 * 19 18 15 22 22 N 1.31516 * 119.99764 * 0.27723 * 21 19 18 23 23 Si 1.86793 * 120.00235 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47378 * 60.00024 * 23 21 19 25 25 H 1.48503 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47236 * 300.00188 * 23 21 19 27 27 C 1.46850 * 111.20037 * 298.26507 * 13 12 11 28 28 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47306 * 299.99567 * 1 2 3 30 30 H 1.09003 * 109.47194 * 60.00286 * 1 2 3 31 31 H 1.08998 * 109.47355 * 180.02562 * 6 5 3 32 32 H 1.08995 * 109.47116 * 300.00557 * 6 5 3 33 33 H 1.09000 * 109.46816 * 60.00018 * 6 5 3 34 34 H 1.09000 * 109.46690 * 299.99760 * 7 5 3 35 35 H 1.09001 * 109.46788 * 60.00001 * 7 5 3 36 36 H 1.08998 * 109.47063 * 179.97438 * 7 5 3 37 37 H 1.09001 * 109.51676 * 57.69121 * 10 8 5 38 38 H 1.08997 * 109.57440 * 297.53081 * 10 8 5 39 39 H 1.09004 * 109.50351 * 182.40365 * 11 10 8 40 40 H 1.09005 * 109.53751 * 62.31409 * 11 10 8 41 41 H 1.09001 * 109.45699 * 299.17114 * 12 11 10 42 42 H 1.08996 * 109.46638 * 179.19962 * 12 11 10 43 43 H 1.09001 * 109.46913 * 56.21709 * 14 13 12 44 44 H 1.09002 * 109.46587 * 296.22104 * 14 13 12 45 45 H 1.08998 * 109.46978 * 185.03011 * 17 15 14 46 46 H 1.08998 * 109.46658 * 305.02124 * 17 15 14 47 47 H 1.08994 * 109.47328 * 65.02413 * 17 15 14 48 48 H 1.09003 * 109.47204 * 54.99974 * 18 15 14 49 49 H 1.08998 * 109.47384 * 295.00123 * 18 15 14 50 50 H 0.96997 * 120.00406 * 359.72104 * 22 21 19 51 51 H 1.08997 * 109.46083 * 181.75711 * 27 13 12 52 52 H 1.08998 * 109.45970 * 301.72020 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1129 0.5815 -1.2501 7 6 4.1138 0.5811 1.2484 8 6 4.0001 2.7421 -0.0011 9 1 5.0885 2.7997 0.0000 10 6 3.4526 3.4366 -1.2511 11 6 3.8401 4.9174 -1.2136 12 6 3.2943 5.5504 0.0683 13 7 3.8480 4.8515 1.2350 14 6 3.4554 5.5185 2.4836 15 6 3.9701 4.7111 3.6768 16 1 3.5689 3.6987 3.6306 17 6 5.4986 4.6565 3.6345 18 6 3.5195 5.3794 4.9773 19 6 3.9204 4.5202 6.1487 20 1 4.4445 3.5907 5.9823 21 6 3.6180 4.9208 7.4329 22 7 2.9750 6.0501 7.6352 23 14 4.1142 3.8556 8.8848 24 1 5.5902 3.6929 8.8980 25 1 3.6759 4.5037 10.1470 26 1 3.4705 2.5228 8.7639 27 6 3.4496 3.4381 1.2457 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 5.2014 0.6382 -1.2503 32 1 3.8039 -0.4637 -1.2501 33 1 3.7228 1.0757 -2.1398 34 1 3.7244 1.0751 2.1386 35 1 3.8047 -0.4642 1.2483 36 1 5.2023 0.6378 1.2478 37 1 2.3666 3.3447 -1.2726 38 1 3.8752 2.9719 -2.1418 39 1 3.4168 5.4264 -2.0796 40 1 4.9260 5.0106 -1.2318 41 1 2.2073 5.4697 0.0787 42 1 3.5807 6.6015 0.1048 43 1 2.3686 5.5870 2.5328 44 1 3.8842 6.5203 2.5106 45 1 5.8612 4.0080 4.4321 46 1 5.8214 4.2624 2.6709 47 1 5.9019 5.6599 3.7703 48 1 2.4361 5.4987 4.9681 49 1 3.9920 6.3577 5.0658 50 1 2.7170 6.6031 6.8813 51 1 3.8489 2.9550 2.1375 52 1 2.3619 3.3674 1.2507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602597084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:42 Heat of formation + Delta-G solvation = -108.169223 kcal Electronic energy + Delta-G solvation = -28357.684591 eV Core-core repulsion = 24742.366007 eV Total energy + Delta-G solvation = -3615.318585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30927 -39.07810 -36.94554 -36.07578 -34.98518 -32.88631 -31.20593 -29.89279 -27.95500 -27.80732 -26.42646 -25.83800 -24.13276 -23.43600 -22.80945 -21.96957 -19.91686 -19.80470 -18.84758 -17.39027 -16.88515 -16.51442 -16.31308 -15.61073 -14.80521 -14.62247 -14.27222 -14.19109 -13.86253 -13.72527 -13.63412 -13.60444 -13.41786 -12.83155 -12.68871 -12.55074 -12.44679 -12.30257 -12.10052 -11.74876 -11.64776 -11.51978 -11.42116 -11.23796 -11.08467 -11.00925 -10.93916 -10.64925 -10.57873 -10.35137 -10.17095 -10.08054 -10.00371 -9.88540 -9.53032 -9.35475 -8.41499 -8.25437 -7.85286 -6.28225 -3.95913 2.08932 2.56149 3.46795 3.49017 3.67517 4.08684 4.42068 4.55184 4.57843 4.61153 4.85531 4.91350 4.99498 5.03679 5.10139 5.19627 5.32178 5.37484 5.40994 5.48223 5.50593 5.58451 5.60035 5.69259 5.70490 5.75145 5.81255 5.86440 5.91217 5.97381 6.00928 6.05316 6.12052 6.12617 6.18457 6.25784 6.33914 6.43021 6.50845 6.63835 6.64519 6.96422 7.11595 7.15752 7.45099 7.49278 7.52204 7.65778 7.66953 8.31782 8.54616 8.97010 9.75582 11.12239 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.003874 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.003622 B = 7225.125184 C = 8158.831837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.492 6.492 5 C -0.047 4.047 6 C -0.141 4.141 7 C -0.147 4.147 8 C -0.062 4.062 9 H 0.090 0.910 10 C -0.130 4.130 11 C -0.110 4.110 12 C 0.055 3.945 13 N -0.532 5.532 14 C 0.061 3.939 15 C -0.078 4.078 16 H 0.057 0.943 17 C -0.121 4.121 18 C 0.014 3.986 19 C -0.592 4.592 20 H 0.049 0.951 21 C 0.012 3.988 22 N -0.916 5.916 23 Si 1.066 2.934 24 H -0.288 1.288 25 H -0.283 1.283 26 H -0.289 1.289 27 C 0.040 3.960 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.040 0.960 48 H 0.002 0.998 49 H 0.007 0.993 50 H 0.268 0.732 51 H 0.083 0.917 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -11.559 -21.326 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.379 6.379 5 C -0.048 4.048 6 C -0.199 4.199 7 C -0.204 4.204 8 C -0.081 4.081 9 H 0.108 0.892 10 C -0.168 4.168 11 C -0.148 4.148 12 C -0.073 4.073 13 N -0.256 5.256 14 C -0.066 4.066 15 C -0.097 4.097 16 H 0.075 0.925 17 C -0.179 4.179 18 C -0.023 4.023 19 C -0.630 4.630 20 H 0.067 0.933 21 C -0.191 4.191 22 N -0.553 5.553 23 Si 0.895 3.105 24 H -0.215 1.215 25 H -0.209 1.209 26 H -0.216 1.216 27 C -0.087 4.087 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.020 0.980 49 H 0.025 0.975 50 H 0.078 0.922 51 H 0.101 0.899 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.454 -11.334 -19.703 22.735 hybrid contribution -1.166 0.219 -1.578 1.974 sum -0.712 -11.115 -21.281 24.019 Atomic orbital electron populations 1.23254 0.76614 1.03544 1.02574 1.86501 1.23163 1.33742 1.84072 1.23857 0.91960 0.81162 0.72008 1.90587 1.67162 1.35802 1.44351 1.20628 0.86602 0.98515 0.99098 1.21907 1.01994 1.00559 0.95390 1.21958 1.02215 1.00587 0.95634 1.21115 1.01009 0.89801 0.96133 0.89198 1.21953 1.02728 0.95525 0.96544 1.21497 1.01300 0.95373 0.96610 1.22029 0.96772 0.97798 0.90698 1.61948 1.59525 1.01908 1.02202 1.22263 0.97307 0.98222 0.88808 1.21161 0.96137 0.98432 0.93943 0.92501 1.21571 0.95484 1.00934 0.99863 1.19253 0.95224 0.95916 0.91931 1.22015 1.40575 1.07935 0.92467 0.93313 1.25804 0.94823 0.97999 1.00451 1.70771 1.37004 1.12396 1.35147 0.83582 0.76077 0.75007 0.75829 1.21469 1.20866 1.21585 1.22539 0.99781 0.89100 0.97313 0.88230 0.91783 0.92082 0.90774 0.91368 0.91911 0.91299 0.91347 0.90573 0.90055 0.92422 0.92132 0.91477 0.95219 0.91368 0.95777 0.91344 0.92984 0.93611 0.94089 0.97993 0.97493 0.92181 0.89888 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.00 10.37 -39.25 -0.41 -4.41 16 3 C 0.47 5.84 5.96 36.01 0.21 6.06 16 4 O -0.49 -7.39 11.09 -18.75 -0.21 -7.60 16 5 C -0.05 -0.50 0.53 -155.66 -0.08 -0.58 16 6 C -0.14 -1.14 8.05 37.16 0.30 -0.84 16 7 C -0.15 -1.51 8.06 37.16 0.30 -1.21 16 8 C -0.06 -0.75 1.68 -90.54 -0.15 -0.90 16 9 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 10 C -0.13 -1.51 4.58 -26.61 -0.12 -1.63 16 11 C -0.11 -1.29 6.09 -26.66 -0.16 -1.45 16 12 C 0.06 0.79 5.46 -3.84 -0.02 0.77 16 13 N -0.53 -8.57 4.00 -234.68 -0.94 -9.51 16 14 C 0.06 1.15 4.54 -3.83 -0.02 1.13 16 15 C -0.08 -1.67 1.85 -90.62 -0.17 -1.84 16 16 H 0.06 1.25 6.07 -51.93 -0.32 0.93 16 17 C -0.12 -2.42 8.77 37.16 0.33 -2.10 16 18 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 19 C -0.59 -17.03 8.47 -34.44 -0.29 -17.32 16 20 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 21 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 22 N -0.92 -28.74 13.65 55.43 0.76 -27.98 16 23 Si 1.07 25.80 29.90 -169.99 -5.08 20.71 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.04 0.62 3.62 -3.83 -0.01 0.60 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.51 8.11 -51.93 -0.42 0.08 16 33 H 0.06 0.50 6.49 -51.93 -0.34 0.16 16 34 H 0.07 0.84 6.46 -51.93 -0.34 0.51 16 35 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.10 5.48 -51.93 -0.28 0.81 16 38 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 1.10 7.10 -51.93 -0.37 0.73 16 46 H 0.04 0.81 7.47 -51.93 -0.39 0.42 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.00 0.05 8.00 -51.93 -0.42 -0.36 16 49 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 50 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 51 H 0.08 1.37 4.08 -51.93 -0.21 1.16 16 52 H 0.06 0.97 5.48 -51.93 -0.28 0.68 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -32.46 385.32 -8.60 -41.06 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -9.50 Total: -0.67 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 0.97 Total: -17.41 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.18 Total: -37.49 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.61 Total: -12.01 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.46 -8.60 -41.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602597084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.113 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds