Wall clock time and date at job start Fri Apr 10 2020 22:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99920 * 2 1 4 4 O 1.20826 * 119.99917 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99756 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47102 * 299.99198 * 5 3 2 7 7 C 1.52999 * 109.47400 * 59.99561 * 5 3 2 8 8 C 1.53003 * 109.46849 * 179.97438 * 5 3 2 9 9 H 1.09003 * 109.49883 * 179.97438 * 8 5 3 10 10 C 1.53116 * 109.50454 * 59.80413 * 8 5 3 11 11 C 1.53113 * 109.16121 * 182.40316 * 10 8 5 12 12 C 1.53040 * 109.28091 * 57.65099 * 11 10 8 13 13 N 1.46845 * 109.52237 * 300.82550 * 12 11 10 14 14 C 1.46904 * 110.99768 * 185.83798 * 13 12 11 15 15 C 1.53001 * 109.47066 * 52.05992 * 14 13 12 16 16 H 1.09004 * 109.46968 * 302.09088 * 15 14 13 17 17 C 1.52995 * 109.47410 * 62.09414 * 15 14 13 18 18 C 1.53006 * 109.46904 * 182.09643 * 15 14 13 19 19 C 1.50700 * 109.47035 * 174.99929 * 18 15 14 20 20 H 1.07997 * 120.00027 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00057 * 180.02562 * 19 18 15 22 22 N 1.31513 * 119.99676 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46862 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46982 * 119.99993 * 23 21 19 26 26 H 1.48493 * 109.46779 * 239.99610 * 23 21 19 27 27 C 1.46839 * 111.20231 * 61.73581 * 13 12 11 28 28 H 1.09006 * 109.46849 * 60.00572 * 1 2 3 29 29 H 1.08999 * 109.47593 * 300.00474 * 1 2 3 30 30 H 1.09001 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46720 * 60.00465 * 6 5 3 32 32 H 1.09007 * 109.47325 * 179.97438 * 6 5 3 33 33 H 1.08995 * 109.47240 * 300.00206 * 6 5 3 34 34 H 1.08999 * 109.47146 * 59.99742 * 7 5 3 35 35 H 1.09003 * 109.47007 * 180.02562 * 7 5 3 36 36 H 1.08999 * 109.46893 * 300.00190 * 7 5 3 37 37 H 1.08998 * 109.52254 * 302.30962 * 10 8 5 38 38 H 1.09003 * 109.52457 * 62.49724 * 10 8 5 39 39 H 1.09000 * 109.50448 * 297.71036 * 11 10 8 40 40 H 1.09006 * 109.53781 * 177.61432 * 11 10 8 41 41 H 1.09002 * 109.46331 * 180.80367 * 12 11 10 42 42 H 1.09005 * 109.44653 * 60.83490 * 12 11 10 43 43 H 1.08994 * 109.46876 * 172.05664 * 14 13 12 44 44 H 1.08994 * 109.47080 * 292.06049 * 14 13 12 45 45 H 1.09004 * 109.46916 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47431 * 300.00005 * 17 15 14 47 47 H 1.09004 * 109.47322 * 59.99890 * 17 15 14 48 48 H 1.09002 * 109.46736 * 294.99494 * 18 15 14 49 49 H 1.08994 * 109.47136 * 54.99831 * 18 15 14 50 50 H 0.97004 * 119.99980 * 180.02562 * 22 21 19 51 51 H 1.08998 * 109.46419 * 178.23725 * 27 13 12 52 52 H 1.09008 * 109.45286 * 58.27113 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1128 0.5817 1.2503 7 6 4.1139 0.5809 -1.2482 8 6 4.0001 2.7421 -0.0002 9 1 5.0886 2.7997 0.0007 10 6 3.4484 3.4389 1.2466 11 6 3.8361 4.9196 1.2077 12 6 3.2946 5.5502 -0.0773 13 7 3.8523 4.8490 -1.2408 14 6 3.4640 5.5138 -2.4919 15 6 3.8109 7.0016 -2.4079 16 1 3.3024 7.4455 -1.5520 17 6 5.3233 7.1641 -2.2432 18 6 3.3591 7.7038 -3.6900 19 6 3.5887 9.1874 -3.5578 20 1 4.0138 9.5892 -2.6500 21 6 3.2549 10.0318 -4.5953 22 7 2.7367 9.5424 -5.7006 23 14 3.5388 11.8708 -4.4312 24 1 4.1276 12.1638 -3.0998 25 1 4.4695 12.3249 -5.4955 26 1 2.2443 12.5855 -4.5676 27 6 3.4539 3.4357 -1.2502 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.8037 -0.4637 1.2504 32 1 5.2014 0.6383 1.2505 33 1 3.7227 1.0760 2.1399 34 1 3.7245 1.0747 -2.1385 35 1 5.2024 0.6376 -1.2475 36 1 3.8048 -0.4643 -1.2480 37 1 2.3624 3.3471 1.2647 38 1 3.8689 2.9756 2.1391 39 1 4.9219 5.0122 1.2290 40 1 3.4104 5.4307 2.0713 41 1 3.5812 6.6012 -0.1149 42 1 2.2077 5.4695 -0.0911 43 1 4.0016 5.0619 -3.3254 44 1 2.3912 5.3991 -2.6465 45 1 5.5705 8.2241 -2.1838 46 1 5.6452 6.6638 -1.3298 47 1 5.8318 6.7202 -3.0991 48 1 3.9320 7.3214 -4.5348 49 1 2.2985 7.5135 -3.8541 50 1 2.5022 10.1364 -6.4308 51 1 3.8561 2.9509 -2.1397 52 1 2.3662 3.3652 -1.2586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602597086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:47 Heat of formation + Delta-G solvation = -104.288677 kcal Electronic energy + Delta-G solvation = -27832.159413 eV Core-core repulsion = 24217.009102 eV Total energy + Delta-G solvation = -3615.150312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35735 -39.05409 -37.03610 -36.15301 -34.63639 -32.67067 -31.48613 -29.73439 -28.01552 -27.90565 -26.78834 -25.78676 -24.21487 -23.43775 -22.80217 -21.86157 -20.00665 -19.85693 -18.49071 -17.45536 -16.61000 -16.59937 -16.17051 -15.64123 -14.76194 -14.53670 -14.45372 -14.26541 -14.17431 -13.87362 -13.71772 -13.53360 -13.09831 -12.73180 -12.69458 -12.52840 -12.46027 -12.18139 -12.16687 -12.02461 -11.68701 -11.35294 -11.32907 -11.30145 -11.10423 -11.01667 -10.81058 -10.68796 -10.58313 -10.39613 -10.24790 -10.04900 -10.01565 -9.89516 -9.45946 -9.06927 -8.85225 -8.28466 -7.78511 -5.93311 -3.94038 2.01782 2.48489 3.34783 3.42167 3.46473 4.08038 4.39054 4.48880 4.51100 4.54817 4.82473 4.85361 4.92372 5.03656 5.11000 5.22230 5.26340 5.32369 5.40572 5.42569 5.45158 5.50596 5.62858 5.65011 5.72289 5.79475 5.81052 5.87638 5.90550 5.98365 6.04496 6.06140 6.15847 6.20280 6.25200 6.34439 6.37103 6.52425 6.60198 6.66927 6.76418 7.10325 7.23313 7.28545 7.56632 7.59203 7.60775 7.75692 7.92030 8.07601 8.51938 9.12638 9.69062 11.18341 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.002863 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.531541 B = 9777.506214 C =10140.962769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.489 6.489 5 C -0.047 4.047 6 C -0.142 4.142 7 C -0.145 4.145 8 C -0.062 4.062 9 H 0.090 0.910 10 C -0.130 4.130 11 C -0.111 4.111 12 C 0.050 3.950 13 N -0.532 5.532 14 C 0.063 3.937 15 C -0.086 4.086 16 H 0.057 0.943 17 C -0.122 4.122 18 C 0.027 3.973 19 C -0.510 4.510 20 H 0.056 0.944 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.889 3.111 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.045 3.955 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.029 0.971 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.040 0.960 48 H 0.016 0.984 49 H 0.012 0.988 50 H 0.258 0.742 51 H 0.066 0.934 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -22.595 14.676 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.376 6.376 5 C -0.049 4.049 6 C -0.199 4.199 7 C -0.202 4.202 8 C -0.080 4.080 9 H 0.109 0.891 10 C -0.167 4.167 11 C -0.149 4.149 12 C -0.077 4.077 13 N -0.256 5.256 14 C -0.064 4.064 15 C -0.104 4.104 16 H 0.076 0.924 17 C -0.179 4.179 18 C -0.010 4.010 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.083 4.083 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.030 0.970 50 H 0.068 0.932 51 H 0.085 0.915 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.995 -22.225 14.537 26.575 hybrid contribution -1.110 1.066 -0.220 1.554 sum -0.115 -21.159 14.316 25.548 Atomic orbital electron populations 1.23254 0.76589 1.03522 1.02627 1.86501 1.23175 1.33790 1.84134 1.23867 0.91960 0.81174 0.72173 1.90612 1.67110 1.35752 1.44118 1.20639 0.86604 0.98629 0.99026 1.21908 1.02006 1.00500 0.95480 1.21938 1.02147 1.00506 0.95594 1.21108 1.01041 0.89582 0.96298 0.89139 1.21953 1.02662 0.95815 0.96282 1.21524 1.01336 0.95019 0.97040 1.22155 0.96628 0.99066 0.89894 1.61959 1.59604 1.01126 1.02893 1.22256 0.97595 0.96176 0.90420 1.21310 0.96480 0.91700 1.00949 0.92444 1.21579 0.95720 1.00862 0.99741 1.19122 0.96071 0.94672 0.91165 1.21277 1.40641 0.92128 1.00752 0.92558 1.25023 0.95494 0.98609 0.95485 1.69983 1.43657 1.34789 1.05293 0.86585 0.77757 0.85936 0.78034 1.19753 1.21103 1.21161 1.22401 0.99685 0.89556 0.96642 0.91850 0.91989 0.88243 0.91412 0.90762 0.91786 0.91601 0.90628 0.91411 0.90056 0.92509 0.91516 0.92070 0.89725 0.95277 0.91414 0.95708 0.92892 0.93939 0.94128 0.96594 0.97012 0.93213 0.91531 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.54 10.37 -39.25 -0.41 -3.94 16 3 C 0.47 5.23 5.96 36.00 0.21 5.45 16 4 O -0.49 -6.88 11.09 -18.75 -0.21 -7.09 16 5 C -0.05 -0.44 0.53 -155.66 -0.08 -0.52 16 6 C -0.14 -1.02 8.06 37.16 0.30 -0.72 16 7 C -0.14 -1.17 8.05 37.16 0.30 -0.87 16 8 C -0.06 -0.69 1.68 -90.54 -0.15 -0.84 16 9 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 10 C -0.13 -1.51 4.59 -26.61 -0.12 -1.63 16 11 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 12 C 0.05 0.79 4.99 -3.83 -0.02 0.77 16 13 N -0.53 -8.55 4.09 -234.68 -0.96 -9.51 16 14 C 0.06 1.18 4.54 -3.82 -0.02 1.16 16 15 C -0.09 -1.83 1.85 -90.62 -0.17 -1.99 16 16 H 0.06 1.25 6.06 -51.93 -0.31 0.93 16 17 C -0.12 -2.43 8.80 37.15 0.33 -2.11 16 18 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 19 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 20 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 23 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.05 0.63 4.08 -3.84 -0.02 0.62 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.47 6.50 -51.93 -0.34 0.14 16 34 H 0.07 0.60 6.45 -51.93 -0.33 0.27 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.08 1.10 5.46 -51.93 -0.28 0.81 16 38 H 0.06 0.56 6.58 -51.93 -0.34 0.21 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.41 5.72 -51.93 -0.30 1.12 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 46 H 0.04 0.76 7.59 -51.93 -0.39 0.37 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.07 0.90 6.46 -51.93 -0.34 0.56 16 52 H 0.05 0.88 5.50 -51.92 -0.29 0.60 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -31.94 386.62 -8.63 -40.57 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -9.55 Total: -2.42 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 0.96 Total: -13.73 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.22 Total: -36.28 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.62 Total: -11.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.94 -8.63 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602597086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.723 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds