Wall clock time and date at job start Fri Apr 10 2020 22:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47252 * 2 1 4 4 O 1.45193 * 109.47386 * 120.00302 * 2 1 3 5 5 C 1.34228 * 117.00091 * 90.00104 * 4 2 1 6 6 O 1.20820 * 120.00087 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99926 * 180.02562 * 5 4 2 8 8 C 1.53007 * 109.46913 * 179.97438 * 7 5 4 9 9 H 1.08992 * 109.50451 * 305.08313 * 8 7 5 10 10 C 1.53124 * 109.52900 * 65.18130 * 8 7 5 11 11 C 1.53117 * 109.15539 * 177.61371 * 10 8 7 12 12 C 1.53043 * 109.27983 * 302.34344 * 11 10 8 13 13 N 1.46846 * 109.52403 * 59.18188 * 12 11 10 14 14 C 1.46892 * 111.00198 * 174.16177 * 13 12 11 15 15 C 1.52997 * 109.47324 * 199.97951 * 14 13 12 16 16 H 1.09002 * 109.47308 * 305.06443 * 15 14 13 17 17 C 1.53002 * 109.47161 * 65.06518 * 15 14 13 18 18 C 1.53000 * 109.47439 * 185.06457 * 15 14 13 19 19 C 1.50702 * 109.47237 * 174.99928 * 18 15 14 20 20 H 1.07991 * 119.99706 * 0.02562 * 19 18 15 21 21 C 1.37873 * 119.99965 * 179.97438 * 19 18 15 22 22 N 1.31523 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00288 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47306 * 89.99692 * 23 21 19 25 25 H 1.48500 * 109.47459 * 210.00175 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00317 * 23 21 19 27 27 C 1.46845 * 111.19641 * 298.25983 * 13 12 11 28 28 H 1.09001 * 109.46990 * 59.99595 * 1 2 3 29 29 H 1.08993 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47095 * 299.99666 * 1 2 3 31 31 H 1.09006 * 109.47344 * 240.00414 * 2 1 3 32 32 H 1.08994 * 109.47350 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47073 * 300.00604 * 3 2 1 34 34 H 1.09006 * 109.46608 * 59.99963 * 3 2 1 35 35 H 1.09002 * 109.47281 * 60.00338 * 7 5 4 36 36 H 1.08993 * 109.47258 * 300.00090 * 7 5 4 37 37 H 1.08995 * 109.52243 * 297.51590 * 10 8 7 38 38 H 1.08996 * 109.52348 * 57.64651 * 10 8 7 39 39 H 1.09003 * 109.50587 * 62.28485 * 11 10 8 40 40 H 1.08998 * 109.50390 * 182.36642 * 11 10 8 41 41 H 1.08997 * 109.45950 * 299.16364 * 12 11 10 42 42 H 1.09005 * 109.46305 * 179.20059 * 12 11 10 43 43 H 1.09004 * 109.47296 * 79.97922 * 14 13 12 44 44 H 1.09001 * 109.46875 * 319.98001 * 14 13 12 45 45 H 1.08998 * 109.47287 * 185.01300 * 17 15 14 46 46 H 1.09008 * 109.47040 * 305.01224 * 17 15 14 47 47 H 1.09000 * 109.47223 * 65.00747 * 17 15 14 48 48 H 1.09004 * 109.46673 * 54.99839 * 18 15 14 49 49 H 1.09002 * 109.46824 * 295.00167 * 18 15 14 50 50 H 0.96996 * 119.99621 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.46660 * 181.75713 * 27 13 12 52 52 H 1.08998 * 109.46485 * 301.72560 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6845 1.1854 5 6 2.2172 -2.0075 1.0849 6 8 1.9974 -2.5749 0.0411 7 6 2.7184 -2.7854 2.2744 8 6 2.8625 -4.2606 1.8951 9 1 1.9155 -4.6293 1.5013 10 6 3.9524 -4.4111 0.8300 11 6 4.1309 -5.8956 0.5001 12 6 4.4827 -6.6588 1.7792 13 7 3.4093 -6.4839 2.7660 14 6 3.6466 -7.3138 3.9545 15 6 2.3322 -7.5046 4.7140 16 1 1.8997 -6.5304 4.9423 17 6 1.3560 -8.3062 3.8506 18 6 2.6008 -8.2612 6.0164 19 6 1.3297 -8.3418 6.8219 20 1 0.4211 -7.8982 6.4426 21 6 1.3265 -8.9828 8.0426 22 7 2.4328 -9.5244 8.5038 23 14 -0.2491 -9.0834 9.0408 24 1 -0.9914 -10.3155 8.6714 25 1 0.0829 -9.1206 10.4877 26 1 -1.0918 -7.8941 8.7567 27 6 3.2511 -5.0711 3.1337 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8901 35 1 2.0088 -2.6896 3.0963 36 1 3.6871 -2.3929 2.5832 37 1 3.6592 -3.8707 -0.0700 38 1 4.8905 -4.0058 1.2090 39 1 3.2037 -6.2902 0.0844 40 1 4.9345 -6.0128 -0.2268 41 1 5.4171 -6.2730 2.1868 42 1 4.5966 -7.7184 1.5503 43 1 4.3723 -6.8220 4.6022 44 1 4.0333 -8.2857 3.6478 45 1 0.3908 -8.3660 4.3535 46 1 1.2334 -7.8123 2.8867 47 1 1.7483 -9.3114 3.6964 48 1 3.3628 -7.7351 6.5916 49 1 2.9497 -9.2680 5.7864 50 1 2.4306 -9.9751 9.3627 51 1 2.4705 -4.9774 3.8886 52 1 4.1913 -4.6927 3.5350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602617792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:59 Heat of formation + Delta-G solvation = -122.449216 kcal Electronic energy + Delta-G solvation = -26650.453901 eV Core-core repulsion = 23034.516089 eV Total energy + Delta-G solvation = -3615.937812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88887 -39.11172 -37.16777 -35.58743 -33.67734 -33.29748 -32.27033 -31.24009 -27.98216 -27.68168 -26.89950 -25.90460 -23.70686 -23.27640 -22.15657 -21.42918 -20.52520 -19.63960 -18.80507 -17.92560 -16.51772 -16.44247 -16.36760 -15.56193 -14.99081 -14.66292 -14.42816 -14.35574 -14.30415 -14.06245 -13.54630 -13.51420 -13.09335 -12.96862 -12.69852 -12.61337 -12.45296 -12.25032 -12.11176 -12.07164 -11.83499 -11.37422 -11.29010 -11.19889 -11.03376 -10.88568 -10.85859 -10.79671 -10.75136 -10.61001 -10.38707 -10.26907 -10.20755 -10.00720 -9.54802 -9.06473 -8.91514 -8.29748 -7.94450 -5.94771 -3.95528 2.05893 2.43512 3.34935 3.41137 3.44450 4.12160 4.39916 4.42063 4.50649 4.52748 4.71085 4.73665 4.76161 4.96995 5.12987 5.14394 5.25837 5.30276 5.33871 5.36975 5.40252 5.41218 5.49750 5.52439 5.63895 5.67266 5.71320 5.73419 5.76968 5.85062 5.96207 6.00450 6.10945 6.16301 6.22685 6.26117 6.38759 6.44125 6.45267 6.61669 6.77743 7.07890 7.21667 7.25823 7.45697 7.50793 7.61424 7.73304 7.89988 8.06048 8.50581 9.11065 9.67704 11.16794 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.002649 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.790267 B =10566.321007 C =11820.570041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.356 6.356 5 C 0.463 3.537 6 O -0.503 6.503 7 C -0.111 4.111 8 C -0.072 4.072 9 H 0.089 0.911 10 C -0.121 4.121 11 C -0.113 4.113 12 C 0.054 3.946 13 N -0.533 5.533 14 C 0.061 3.939 15 C -0.078 4.078 16 H 0.054 0.946 17 C -0.122 4.122 18 C 0.026 3.974 19 C -0.510 4.510 20 H 0.056 0.944 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.274 1.274 27 C 0.061 3.939 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.038 0.962 48 H 0.012 0.988 49 H 0.015 0.985 50 H 0.259 0.741 51 H 0.082 0.918 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 18.894 -18.221 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.274 6.274 5 C 0.307 3.693 6 O -0.390 6.390 7 C -0.149 4.149 8 C -0.091 4.091 9 H 0.108 0.892 10 C -0.158 4.158 11 C -0.150 4.150 12 C -0.074 4.074 13 N -0.257 5.257 14 C -0.066 4.066 15 C -0.096 4.096 16 H 0.073 0.927 17 C -0.180 4.180 18 C -0.011 4.011 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.717 3.283 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.199 1.199 27 C -0.067 4.067 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.033 0.967 50 H 0.068 0.932 51 H 0.100 0.900 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.119 18.491 -18.625 26.330 hybrid contribution -0.078 0.132 0.993 1.004 sum 2.041 18.623 -17.632 25.727 Atomic orbital electron populations 1.22209 0.94291 1.03233 1.03044 1.22710 0.94656 0.93009 0.87170 1.21892 1.02053 0.93583 1.03158 1.86585 1.77073 1.22648 1.41108 1.23834 0.74126 0.80971 0.90405 1.90631 1.47655 1.69752 1.30950 1.21496 1.03832 0.94827 0.94784 1.21033 1.01114 0.90816 0.96143 0.89242 1.21757 0.97565 0.97112 0.99402 1.21530 1.01889 0.94897 0.96719 1.22107 0.92203 1.00266 0.92811 1.61870 1.44007 1.06630 1.13208 1.22314 0.98592 0.96128 0.89547 1.21173 0.92958 0.99361 0.96155 0.92732 1.21574 0.99374 0.98728 0.98282 1.19143 0.96800 0.95015 0.90154 1.21236 0.95887 1.34844 1.02854 0.92604 1.25024 0.96011 0.95780 0.97809 1.69971 1.26522 1.37478 1.19791 0.86640 0.83869 0.78413 0.79350 1.20748 1.21359 1.19922 1.22087 1.00425 0.88104 0.96054 0.90791 0.91825 0.91480 0.89793 0.91730 0.90452 0.91334 0.87288 0.87810 0.90551 0.92900 0.91077 0.92034 0.95497 0.90969 0.95176 0.91457 0.93118 0.93707 0.94288 0.97013 0.96660 0.93157 0.89962 0.95112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.55 37.16 0.35 -0.93 16 2 C 0.08 0.66 3.18 -26.73 -0.09 0.58 16 3 C -0.15 -0.88 9.57 37.16 0.36 -0.53 16 4 O -0.36 -3.63 9.88 -39.25 -0.39 -4.02 16 5 C 0.46 5.10 7.67 36.01 0.28 5.38 16 6 O -0.50 -6.66 13.21 -18.75 -0.25 -6.91 16 7 C -0.11 -1.06 5.29 -27.88 -0.15 -1.21 16 8 C -0.07 -0.83 1.99 -90.53 -0.18 -1.02 16 9 H 0.09 1.20 7.95 -51.93 -0.41 0.79 16 10 C -0.12 -1.35 5.00 -26.61 -0.13 -1.49 16 11 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 12 C 0.05 0.70 5.43 -3.83 -0.02 0.68 16 13 N -0.53 -7.93 3.96 -234.67 -0.93 -8.86 16 14 C 0.06 1.07 4.39 -3.83 -0.02 1.05 16 15 C -0.08 -1.59 2.39 -90.62 -0.22 -1.81 16 16 H 0.05 1.13 6.70 -51.93 -0.35 0.78 16 17 C -0.12 -2.42 8.87 37.16 0.33 -2.09 16 18 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 19 C -0.51 -14.33 8.47 -34.44 -0.29 -14.62 16 20 H 0.06 1.54 7.06 -52.49 -0.37 1.16 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 23 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.06 0.81 4.57 -3.83 -0.02 0.80 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.77 7.16 -51.93 -0.37 0.39 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.92 6.04 -51.93 -0.31 0.60 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 43 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 44 H 0.07 1.17 7.79 -51.93 -0.40 0.77 16 45 H 0.05 1.06 7.10 -51.93 -0.37 0.69 16 46 H 0.04 0.81 7.62 -51.92 -0.40 0.41 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.08 1.16 6.65 -51.93 -0.35 0.82 16 52 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -31.18 402.14 -10.02 -41.21 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -10.06 Total: -3.27 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.18 Total: -14.64 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.19 Total: -35.23 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.64 Total: -10.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.18 -10.02 -41.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.242 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds