Wall clock time and date at job start Fri Apr 10 2020 22:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99710 * 2 1 4 4 O 1.20826 * 120.00193 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99599 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47182 * 299.99686 * 5 3 2 7 7 C 1.52995 * 109.47267 * 59.99685 * 5 3 2 8 8 C 1.53003 * 109.46991 * 184.09396 * 7 5 3 9 9 C 1.52996 * 109.47442 * 65.68225 * 8 7 5 10 10 C 1.52990 * 109.47531 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47099 * 299.99705 * 10 9 8 12 12 C 1.53003 * 109.47136 * 59.99712 * 11 10 9 13 13 C 1.52994 * 109.47396 * 300.00481 * 12 11 10 14 14 N 1.46904 * 109.46963 * 179.97438 * 5 3 2 15 15 C 1.46897 * 111.00091 * 84.99835 * 14 5 3 16 16 C 1.52997 * 109.47266 * 179.97438 * 15 14 5 17 17 H 1.08990 * 109.47260 * 305.00286 * 16 15 14 18 18 C 1.53008 * 109.46827 * 64.99853 * 16 15 14 19 19 C 1.52994 * 109.47239 * 184.99765 * 16 15 14 20 20 C 1.50702 * 109.47135 * 175.00037 * 19 16 15 21 21 H 1.08003 * 120.00293 * 0.02562 * 20 19 16 22 22 C 1.37881 * 120.00078 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99747 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99982 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46923 * 90.00515 * 24 22 20 26 26 H 1.48497 * 109.47174 * 210.00475 * 24 22 20 27 27 H 1.48498 * 109.47332 * 330.00381 * 24 22 20 28 28 H 1.08995 * 109.47027 * 59.99984 * 1 2 3 29 29 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47004 * 300.00194 * 1 2 3 31 31 H 1.08998 * 109.47279 * 64.09495 * 7 5 3 32 32 H 1.08997 * 109.47260 * 304.08994 * 7 5 3 33 33 H 1.09005 * 109.47100 * 305.67882 * 8 7 5 34 34 H 1.08998 * 109.47238 * 59.99317 * 9 8 7 35 35 H 1.09004 * 109.47051 * 300.00116 * 9 8 7 36 36 H 1.08998 * 109.47580 * 59.99326 * 10 9 8 37 37 H 1.08999 * 109.47396 * 180.02562 * 10 9 8 38 38 H 1.08999 * 109.47690 * 180.02562 * 11 10 9 39 39 H 1.09003 * 109.47276 * 300.00414 * 11 10 9 40 40 H 1.09004 * 109.47498 * 180.02562 * 12 11 10 41 41 H 1.09005 * 109.46975 * 60.00301 * 12 11 10 42 42 H 1.09005 * 109.46911 * 299.99859 * 13 12 11 43 43 H 1.08996 * 109.47713 * 179.97438 * 13 12 11 44 44 H 1.00901 * 110.99447 * 321.04293 * 14 5 3 45 45 H 1.09004 * 109.46867 * 300.00011 * 15 14 5 46 46 H 1.09001 * 109.47297 * 59.99491 * 15 14 5 47 47 H 1.09000 * 109.47184 * 299.99989 * 18 16 15 48 48 H 1.09004 * 109.47063 * 60.00263 * 18 16 15 49 49 H 1.09003 * 109.46842 * 180.02562 * 18 16 15 50 50 H 1.09004 * 109.47340 * 294.99871 * 19 16 15 51 51 H 1.08997 * 109.47070 * 55.00464 * 19 16 15 52 52 H 0.97000 * 119.99418 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6421 0.5717 -1.2002 9 6 6.1088 -0.3016 -0.0339 10 6 7.6378 -0.3109 0.0164 11 6 8.1878 -0.8752 -1.2951 12 6 7.7211 -0.0019 -2.4615 13 6 6.1920 0.0075 -2.5118 14 7 3.9829 2.6836 -0.0011 15 6 4.0180 3.2227 1.3649 16 6 4.4556 4.6882 1.3238 17 1 5.4082 4.7683 0.8004 18 6 3.3988 5.5156 0.5891 19 6 4.6126 5.2138 2.7520 20 6 5.1609 6.6170 2.7134 21 1 5.3755 7.0871 1.7651 22 6 5.3876 7.3012 3.8889 23 7 5.1259 6.7290 5.0437 24 14 6.0666 9.0408 3.8410 25 1 4.9424 10.0095 3.7844 26 1 6.8743 9.2906 5.0617 27 1 6.9226 9.2051 2.6388 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7818 1.1195 -2.1384 32 1 3.7441 -0.4435 -1.2875 33 1 6.0076 1.5892 -1.0613 34 1 5.7432 -1.3190 -0.1728 35 1 5.7173 0.1006 0.9005 36 1 8.0031 0.7066 0.1555 37 1 7.9703 -0.9334 0.8470 38 1 9.2772 -0.8822 -1.2592 39 1 7.8226 -1.8927 -1.4343 40 1 8.1126 -0.4041 -3.3959 41 1 8.0863 1.0157 -2.3224 42 1 5.8269 -1.0101 -2.6509 43 1 5.8595 0.6299 -3.3424 44 1 3.3827 3.2378 -0.5933 45 1 3.0250 3.1520 1.8091 46 1 4.7255 2.6492 1.9638 47 1 3.2869 5.1411 -0.4284 48 1 2.4461 5.4354 1.1127 49 1 3.7108 6.5596 0.5595 50 1 3.6415 5.2167 3.2470 51 1 5.2991 4.5706 3.3025 52 1 5.2857 7.2102 5.8706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602634709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:01 Heat of formation + Delta-G solvation = -135.329512 kcal Electronic energy + Delta-G solvation = -27199.768976 eV Core-core repulsion = 23583.272633 eV Total energy + Delta-G solvation = -3616.496343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75947 -38.88125 -37.30628 -36.16591 -34.69204 -32.64185 -31.40685 -30.77086 -29.05672 -27.47685 -26.69691 -25.15237 -24.19780 -22.67965 -22.34240 -21.25863 -20.37333 -19.67462 -18.93191 -17.85380 -17.04851 -16.48840 -16.28811 -15.39328 -15.12732 -14.79940 -14.53195 -14.27243 -14.12169 -14.04408 -13.67912 -13.60168 -13.26115 -12.68805 -12.46917 -12.42802 -12.32961 -12.11548 -12.08922 -11.91586 -11.67086 -11.35402 -11.28014 -11.14739 -10.94141 -10.86121 -10.82123 -10.78179 -10.62656 -10.40468 -10.28732 -10.16409 -10.03688 -9.96851 -9.69315 -9.12319 -8.93584 -8.39106 -8.29744 -5.94643 -3.95483 2.11641 2.64582 3.35317 3.41502 3.44993 4.21120 4.47147 4.51778 4.67024 4.69922 4.80442 4.94565 4.96796 5.00506 5.04735 5.17763 5.29164 5.34017 5.41327 5.42149 5.49651 5.50675 5.52403 5.63666 5.70545 5.76424 5.82644 5.87761 5.91258 5.98512 6.10362 6.11112 6.17484 6.21790 6.25317 6.26404 6.31723 6.37120 6.50120 6.59995 6.62215 6.90052 7.15097 7.19934 7.25232 7.50659 7.67443 7.72831 7.89342 8.05812 8.49611 9.10759 9.67713 11.16968 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.003632 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.023312 B = 7706.611679 C = 9664.229936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.429 3.571 4 O -0.504 6.504 5 C 0.094 3.906 6 H 0.116 0.884 7 C -0.095 4.095 8 C -0.080 4.080 9 C -0.115 4.115 10 C -0.120 4.120 11 C -0.118 4.118 12 C -0.119 4.119 13 C -0.113 4.113 14 N -0.653 5.653 15 C 0.058 3.942 16 C -0.081 4.081 17 H 0.066 0.934 18 C -0.132 4.132 19 C 0.029 3.971 20 C -0.511 4.511 21 H 0.056 0.944 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.889 3.111 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.351 0.649 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.042 0.958 49 H 0.061 0.939 50 H 0.014 0.986 51 H 0.015 0.985 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 -19.277 -14.336 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.270 3.730 4 O -0.390 6.390 5 C -0.019 4.019 6 H 0.134 0.866 7 C -0.133 4.133 8 C -0.099 4.099 9 C -0.152 4.152 10 C -0.158 4.158 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.150 4.150 14 N -0.286 5.286 15 C -0.070 4.070 16 C -0.100 4.100 17 H 0.084 0.916 18 C -0.189 4.189 19 C -0.009 4.009 20 C -0.550 4.550 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.537 5.537 24 Si 0.717 3.283 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.173 0.827 45 H 0.048 0.952 46 H 0.087 0.913 47 H 0.050 0.950 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.032 0.968 51 H 0.033 0.967 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.255 -19.081 -14.164 23.796 hybrid contribution -0.996 1.154 0.416 1.580 sum -2.251 -17.928 -13.747 22.704 Atomic orbital electron populations 1.23237 0.77006 1.03394 1.02492 1.86551 1.23046 1.34008 1.84002 1.25636 0.93973 0.81460 0.71966 1.90694 1.66995 1.36350 1.45007 1.21744 0.83841 0.93864 1.02425 0.86600 1.21560 0.96511 0.99737 0.95506 1.21089 0.93193 1.01259 0.94329 1.21617 0.95530 0.99471 0.98585 1.21520 0.95792 1.01542 0.96917 1.21526 0.99869 0.99054 0.95127 1.21522 0.95884 1.00419 0.97864 1.21568 0.95323 1.00725 0.97407 1.61055 1.54492 0.99866 1.13216 1.22287 0.99521 0.97753 0.87432 1.21186 0.98072 0.90445 1.00270 0.91580 1.21718 0.98684 1.01017 0.97523 1.19102 0.96880 0.95670 0.89243 1.21236 1.42156 0.99338 0.92250 0.92554 1.25014 0.95886 0.97975 0.95649 1.69969 1.49165 1.37327 0.97240 0.86637 0.79024 0.85161 0.77441 1.20794 1.21326 1.19869 0.92082 0.88320 0.91990 0.91505 0.90845 0.88840 0.92437 0.91821 0.91577 0.92363 0.92461 0.92405 0.92524 0.91769 0.92441 0.92186 0.82691 0.95214 0.91264 0.95004 0.93911 0.91997 0.96789 0.96669 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.24 10.39 -39.26 -0.41 -4.65 16 3 C 0.43 5.84 7.09 36.01 0.26 6.10 16 4 O -0.50 -8.40 15.06 -18.75 -0.28 -8.68 16 5 C 0.09 1.15 2.36 -68.86 -0.16 0.98 16 6 H 0.12 1.36 6.07 -51.93 -0.32 1.04 16 7 C -0.09 -0.94 4.32 -26.73 -0.12 -1.05 16 8 C -0.08 -0.78 2.13 -90.62 -0.19 -0.98 16 9 C -0.11 -1.09 4.97 -26.74 -0.13 -1.23 16 10 C -0.12 -1.14 5.92 -26.74 -0.16 -1.30 16 11 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 12 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 13 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 14 N -0.65 -9.46 5.42 -107.95 -0.58 -10.04 16 15 C 0.06 1.03 4.84 -3.83 -0.02 1.01 16 16 C -0.08 -1.68 2.55 -90.62 -0.23 -1.91 16 17 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 18 C -0.13 -2.61 8.77 37.16 0.33 -2.29 16 19 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 20 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 21 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 22 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 23 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 24 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 33 H 0.09 1.11 7.57 -51.93 -0.39 0.72 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.66 6.50 -51.93 -0.34 0.32 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.35 5.37 6.00 -39.29 -0.24 5.14 16 45 H 0.03 0.56 7.62 -51.93 -0.40 0.17 16 46 H 0.07 1.19 8.06 -51.93 -0.42 0.78 16 47 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 48 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 50 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -31.03 401.10 -9.76 -40.79 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -9.91 Total: 1.50 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.33 Total: -15.36 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.15 Total: -36.53 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.69 Total: -13.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.03 -9.76 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602634709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.539 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds