Wall clock time and date at job start Fri Apr 10 2020 22:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47425 * 2 1 4 4 C 1.53000 * 109.47199 * 119.99984 * 2 1 3 5 5 C 1.50697 * 109.47111 * 294.99834 * 4 2 1 6 6 H 1.08001 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00124 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47282 * 89.99717 * 9 7 5 11 11 H 1.48498 * 109.46927 * 209.99841 * 9 7 5 12 12 H 1.48504 * 109.46586 * 329.99732 * 9 7 5 13 13 C 1.53005 * 109.46998 * 239.99683 * 2 1 3 14 14 N 1.46903 * 109.46791 * 65.00232 * 13 2 1 15 15 C 1.46903 * 111.00060 * 176.98378 * 14 13 2 16 16 H 1.09003 * 109.46658 * 12.12095 * 15 14 13 17 17 C 1.52993 * 109.47055 * 252.12410 * 15 14 13 18 18 C 1.53005 * 117.50352 * 130.19226 * 17 15 14 19 19 C 1.52999 * 60.00033 * 252.50843 * 18 17 15 20 20 C 1.52992 * 109.47072 * 132.11791 * 15 14 13 21 21 C 1.53006 * 109.61361 * 179.77844 * 20 15 14 22 22 O 1.42899 * 109.46857 * 58.55338 * 21 20 15 23 23 C 1.53202 * 109.54008 * 59.56496 * 20 15 14 24 24 C 1.53095 * 109.15275 * 183.15295 * 23 20 15 25 25 O 1.42904 * 109.41953 * 57.60412 * 24 23 20 26 26 C 1.42901 * 114.09743 * 298.83361 * 25 24 23 27 27 C 1.53093 * 109.41403 * 61.16445 * 26 25 24 28 28 H 1.09000 * 109.47184 * 60.00329 * 1 2 3 29 29 H 1.08999 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46846 * 299.99914 * 1 2 3 31 31 H 1.09004 * 109.47068 * 55.00112 * 4 2 1 32 32 H 1.09004 * 109.47165 * 174.99584 * 4 2 1 33 33 H 0.97000 * 120.00283 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47476 * 305.00013 * 13 2 1 35 35 H 1.09001 * 109.46710 * 184.99475 * 13 2 1 36 36 H 1.00906 * 110.99926 * 53.02965 * 14 13 2 37 37 H 1.09003 * 115.54897 * 275.89617 * 17 15 14 38 38 H 1.09003 * 117.48912 * 359.97438 * 18 17 15 39 39 H 1.08993 * 117.50092 * 145.01262 * 18 17 15 40 40 H 1.09001 * 117.49751 * 252.50863 * 19 18 17 41 41 H 1.08997 * 117.50043 * 107.48734 * 19 18 17 42 42 H 1.09001 * 109.46632 * 178.55074 * 21 20 15 43 43 H 1.08998 * 109.47114 * 298.55030 * 21 20 15 44 44 H 0.96706 * 113.99544 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.53831 * 63.25095 * 23 20 15 46 46 H 1.08998 * 109.52009 * 303.05018 * 23 20 15 47 47 H 1.08992 * 109.48004 * 297.61956 * 24 23 20 48 48 H 1.08994 * 109.48277 * 177.58991 * 24 23 20 49 49 H 1.09004 * 109.47605 * 181.14253 * 26 25 24 50 50 H 1.08997 * 109.48403 * 301.16445 * 26 25 24 51 51 H 1.08992 * 109.52197 * 62.29531 * 27 26 25 52 52 H 1.08998 * 109.52007 * 182.41917 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 1.6441 0.2767 4.7994 9 14 2.9628 -1.9889 3.9028 10 1 4.4162 -1.6854 3.8792 11 1 2.6145 -2.6430 5.1897 12 1 2.6288 -2.8995 2.7783 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4457 15 6 2.1860 -0.5883 -3.6625 16 1 2.5642 -1.5823 -3.4238 17 6 3.3234 0.2699 -4.2197 18 6 4.6381 -0.4344 -4.5611 19 6 4.5536 0.4745 -3.3333 20 6 1.0745 -0.7030 -4.7075 21 6 1.6292 -1.3493 -5.9786 22 8 2.1588 -2.6390 -5.6650 23 6 0.5341 0.6924 -5.0361 24 6 -0.6294 0.5611 -6.0225 25 8 -1.6405 -0.2748 -5.4559 26 6 -1.2055 -1.6061 -5.1719 27 6 -0.0653 -1.5620 -4.1513 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -1.7198 1.2951 32 1 3.1264 -0.7995 1.2055 33 1 1.8914 -0.0462 5.6800 34 1 1.6054 -1.7199 -1.2952 35 1 3.1263 -0.7995 -1.2056 36 1 1.9456 1.0000 -2.3748 37 1 3.0174 1.1008 -4.8555 38 1 4.6926 -1.5093 -4.3883 39 1 5.1970 -0.0672 -5.4217 40 1 5.0571 1.4398 -3.3862 41 1 4.5526 -0.0023 -2.3532 42 1 0.8296 -1.4534 -6.7120 43 1 2.4200 -0.7220 -6.3898 44 1 2.5282 -3.1081 -6.4257 45 1 1.3253 1.2935 -5.4843 46 1 0.1843 1.1721 -4.1220 47 1 -0.2702 0.1183 -6.9514 48 1 -1.0457 1.5474 -6.2270 49 1 -2.0369 -2.1807 -4.7635 50 1 -0.8541 -2.0773 -6.0898 51 1 -0.4272 -1.1279 -3.2193 52 1 0.2967 -2.5732 -3.9657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602676229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:19 Heat of formation + Delta-G solvation = -109.825778 kcal Electronic energy + Delta-G solvation = -28204.822152 eV Core-core repulsion = 24589.431734 eV Total energy + Delta-G solvation = -3615.390418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42623 -39.14303 -37.70390 -37.22080 -35.45758 -34.60386 -33.17910 -31.96404 -29.61433 -28.43221 -27.20149 -25.65525 -24.77130 -23.95308 -23.54608 -23.14264 -21.51974 -20.66350 -19.29194 -18.91454 -18.18881 -17.38060 -16.99300 -16.84474 -16.42938 -16.07222 -15.94231 -15.66759 -15.39463 -15.35393 -15.07891 -14.68824 -14.34767 -14.24116 -13.82131 -13.60925 -13.34128 -13.26970 -13.07751 -12.99680 -12.84065 -12.58135 -12.41925 -12.28534 -12.17156 -12.04512 -11.96562 -11.78542 -11.50112 -11.46099 -11.21503 -11.13749 -11.09395 -10.96383 -10.86100 -10.74330 -10.70337 -10.17289 -9.11460 -8.26903 -6.28848 1.33247 1.35553 1.47295 2.36260 2.81088 3.06910 3.08230 3.31353 3.40148 3.69774 3.81368 3.98716 4.09023 4.12513 4.13695 4.18101 4.24118 4.30723 4.38748 4.40512 4.43924 4.47471 4.56663 4.65850 4.69272 4.75529 4.78902 4.80351 4.88797 4.90674 4.93013 4.95776 5.06818 5.09905 5.15066 5.20512 5.25037 5.30272 5.31859 5.38621 5.42222 5.49720 5.55916 5.60032 5.72128 5.72703 6.20537 6.35121 6.37696 6.60813 6.78545 7.00703 7.34622 8.89930 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.003635 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.490221 B = 7701.989935 C = 8451.772673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 H 0.050 0.950 4 C -0.005 4.005 5 C -0.517 4.517 6 H 0.035 0.965 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.251 1.251 13 C 0.082 3.918 14 N -0.672 5.672 15 C 0.137 3.863 16 H 0.056 0.944 17 C -0.169 4.169 18 C -0.158 4.158 19 C -0.194 4.194 20 C -0.032 4.032 21 C 0.085 3.915 22 O -0.583 6.583 23 C -0.138 4.138 24 C 0.055 3.945 25 O -0.404 6.404 26 C 0.062 3.938 27 C -0.131 4.131 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.025 0.975 31 H 0.014 0.986 32 H 0.011 0.989 33 H 0.264 0.736 34 H 0.058 0.942 35 H 0.021 0.979 36 H 0.342 0.658 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.089 0.911 50 H 0.059 0.941 51 H 0.064 0.936 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -3.246 -30.266 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.054 0.946 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.174 1.174 13 C -0.047 4.047 14 N -0.302 5.302 15 C 0.027 3.973 16 H 0.074 0.926 17 C -0.188 4.188 18 C -0.196 4.196 19 C -0.231 4.231 20 C -0.033 4.033 21 C 0.007 3.993 22 O -0.390 6.390 23 C -0.176 4.176 24 C -0.022 4.022 25 O -0.324 6.324 26 C -0.014 4.014 27 C -0.169 4.169 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.161 0.839 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.240 0.760 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.119 0.881 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.082 0.918 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.552 -3.328 -29.496 29.724 hybrid contribution 1.703 -0.463 0.646 1.880 sum 3.255 -3.791 -28.850 29.279 Atomic orbital electron populations 1.21458 0.95078 1.00366 1.00011 1.20867 0.96349 0.98353 0.93010 0.93123 1.19551 0.95467 0.95775 0.93537 1.21435 1.34265 1.08608 0.91179 0.94647 1.25961 0.97037 1.00747 0.95551 1.70067 1.49112 1.41559 0.98689 0.85727 0.79255 0.80117 0.77954 1.19269 1.21031 1.17442 1.21906 0.96474 0.97014 0.89296 1.60518 1.62977 1.05906 1.00782 1.20966 0.91108 0.95914 0.89276 0.92598 1.22973 0.89403 1.02607 1.03813 1.22937 0.99457 0.98219 0.98941 1.22959 1.02604 1.02128 0.95399 1.20441 0.94106 0.94947 0.93759 1.22302 0.97049 0.84440 0.95461 1.86479 1.81371 1.31237 1.39952 1.22176 0.98468 0.96033 1.00883 1.22779 0.88927 0.95373 0.95072 1.87911 1.37837 1.23333 1.83284 1.22633 0.97459 0.83593 0.97734 1.21979 0.95554 0.99913 0.99483 0.91569 0.94253 0.95549 0.96812 0.97037 0.92672 0.92360 0.96043 0.83897 0.86172 0.89525 0.87372 0.87996 0.90816 0.93002 0.92247 0.75972 0.89422 0.90919 0.91995 0.88128 0.89303 0.92303 0.91765 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 2 C -0.07 -2.64 2.45 -10.79 -0.03 -2.67 16 3 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 4 C -0.01 -0.26 3.52 29.85 0.10 -0.15 16 5 C -0.52 -30.34 8.96 25.60 0.23 -30.11 16 6 H 0.04 2.28 7.30 -2.91 -0.02 2.26 16 7 C 0.00 0.19 5.47 84.65 0.46 0.66 16 8 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 9 Si 0.95 45.66 27.47 68.60 1.88 47.54 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 13 C 0.08 2.62 4.77 86.30 0.41 3.03 16 14 N -0.67 -17.17 4.13 -491.57 -2.03 -19.20 16 15 C 0.14 2.91 1.48 44.91 0.07 2.98 16 16 H 0.06 1.46 6.87 -2.39 -0.02 1.44 16 17 C -0.17 -2.92 3.46 -10.79 -0.04 -2.95 16 18 C -0.16 -2.57 10.16 30.60 0.31 -2.26 16 19 C -0.19 -3.80 10.09 30.60 0.31 -3.49 16 20 C -0.03 -0.58 0.20 -52.06 -0.01 -0.59 16 21 C 0.09 1.18 5.09 71.98 0.37 1.55 16 22 O -0.58 -8.90 12.30 -148.98 -1.83 -10.73 16 23 C -0.14 -2.29 4.49 30.69 0.14 -2.15 16 24 C 0.05 0.87 6.57 72.01 0.47 1.34 16 25 O -0.40 -9.01 10.77 -148.98 -1.60 -10.61 16 26 C 0.06 1.24 6.57 72.01 0.47 1.71 16 27 C -0.13 -2.96 4.71 30.68 0.14 -2.82 16 28 H 0.07 2.29 7.75 -2.39 -0.02 2.27 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.03 1.17 6.95 -2.39 -0.02 1.15 16 31 H 0.01 0.66 7.20 -2.38 -0.02 0.64 16 32 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 33 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.02 0.69 6.62 -2.39 -0.02 0.67 16 36 H 0.34 8.60 8.07 -89.69 -0.72 7.87 16 37 H 0.12 1.73 6.19 -2.39 -0.01 1.72 16 38 H 0.09 1.58 8.06 -2.39 -0.02 1.57 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.80 6.62 -2.39 -0.02 1.78 16 42 H 0.05 0.63 5.01 -2.39 -0.01 0.62 16 43 H 0.06 0.68 7.26 -2.39 -0.02 0.66 16 44 H 0.39 2.59 9.12 -74.05 -0.68 1.92 16 45 H 0.09 1.10 6.33 -2.39 -0.02 1.08 16 46 H 0.07 1.54 7.51 -2.39 -0.02 1.52 16 47 H 0.06 0.76 6.63 -2.39 -0.02 0.74 16 48 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 50 H 0.06 0.98 6.57 -2.39 -0.02 0.96 16 51 H 0.06 1.79 7.52 -2.39 -0.02 1.77 16 52 H 0.06 1.48 7.66 -2.39 -0.02 1.47 16 Total: -1.00 -69.50 384.34 0.23 -69.28 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.54 Total: 24.17 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.05 Total: -39.67 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.73 Total: -79.98 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -3.44 Total: -21.34 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.54 kcal Total: -69.50 0.23 -69.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.550 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds