Wall clock time and date at job start Fri Apr 10 2020 22:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46865 * 2 1 4 4 C 1.52999 * 109.46940 * 240.00479 * 2 1 3 5 5 C 1.50693 * 109.47562 * 65.00140 * 4 2 1 6 6 H 1.08007 * 120.00140 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00251 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00020 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46884 * 60.00019 * 9 7 5 11 11 H 1.48492 * 109.47024 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47349 * 299.99961 * 9 7 5 13 13 C 1.53001 * 109.46931 * 120.00434 * 2 1 3 14 14 N 1.46901 * 109.46808 * 295.00128 * 13 2 1 15 15 C 1.46904 * 110.99604 * 185.52098 * 14 13 2 16 16 H 1.08995 * 109.47384 * 341.17392 * 15 14 13 17 17 C 1.53007 * 109.47166 * 101.17517 * 15 14 13 18 18 C 1.52994 * 117.49676 * 10.69464 * 17 15 14 19 19 C 1.52997 * 60.00482 * 252.51480 * 18 17 15 20 20 C 1.53000 * 109.47050 * 221.17145 * 15 14 13 21 21 C 1.53005 * 109.54486 * 300.00433 * 20 15 14 22 22 O 1.42897 * 109.47240 * 65.86351 * 21 20 15 23 23 C 1.53171 * 109.54564 * 179.82255 * 20 15 14 24 24 C 1.53106 * 109.16071 * 183.24247 * 23 20 15 25 25 O 1.42906 * 109.48313 * 57.47321 * 24 23 20 26 26 C 1.42895 * 114.09660 * 298.88616 * 25 24 23 27 27 C 1.53091 * 109.41322 * 61.16550 * 26 25 24 28 28 H 1.08997 * 109.47168 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47299 * 299.99994 * 1 2 3 30 30 H 1.08999 * 109.47257 * 59.99932 * 1 2 3 31 31 H 1.09005 * 109.46764 * 185.00490 * 4 2 1 32 32 H 1.09001 * 109.47211 * 304.99728 * 4 2 1 33 33 H 0.97009 * 119.99777 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46564 * 175.00138 * 13 2 1 35 35 H 1.08995 * 109.47106 * 55.00200 * 13 2 1 36 36 H 1.00891 * 111.00271 * 61.56867 * 14 13 2 37 37 H 1.08997 * 115.55016 * 156.40650 * 17 15 14 38 38 H 1.09001 * 117.50086 * 0.02562 * 18 17 15 39 39 H 1.09005 * 117.49831 * 145.02106 * 18 17 15 40 40 H 1.08998 * 117.49950 * 252.52083 * 19 18 17 41 41 H 1.09001 * 117.51680 * 107.47823 * 19 18 17 42 42 H 1.08997 * 109.47013 * 185.86979 * 21 20 15 43 43 H 1.09007 * 109.46421 * 305.86636 * 21 20 15 44 44 H 0.96703 * 113.99682 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.52665 * 303.06159 * 23 20 15 46 46 H 1.09003 * 109.52379 * 63.24698 * 23 20 15 47 47 H 1.08997 * 109.40464 * 297.49486 * 24 23 20 48 48 H 1.08994 * 109.49653 * 177.50915 * 24 23 20 49 49 H 1.08998 * 109.48987 * 301.17688 * 26 25 24 50 50 H 1.09003 * 109.48735 * 181.14634 * 26 25 24 51 51 H 1.09003 * 109.52514 * 182.47927 * 27 26 25 52 52 H 1.09002 * 109.57664 * 62.32690 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9933 -0.4015 -3.7283 8 7 2.6764 -1.5185 -3.8512 9 14 1.4985 0.5630 -5.2496 10 1 2.0897 1.9239 -5.1869 11 1 1.9947 -0.1363 -6.4620 12 1 0.0185 0.6685 -5.3093 13 6 2.0400 -0.7214 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.2350 -0.5545 3.6568 16 1 2.5357 -1.5817 3.4508 17 6 3.4586 0.2592 4.0833 18 6 3.6914 1.6019 3.3879 19 6 4.5953 0.4091 3.0701 20 6 1.1975 -0.5426 4.7813 21 6 0.7743 0.8988 5.0719 22 8 0.0836 1.4300 3.9394 23 6 1.8030 -1.1634 6.0438 24 6 0.7336 -1.2210 7.1380 25 8 -0.3893 -1.9697 6.6680 26 6 -1.0245 -1.4084 5.5177 27 6 -0.0265 -1.3604 4.3578 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1264 -0.7994 -1.2056 32 1 1.6054 -1.7197 -1.2953 33 1 2.9243 -1.8410 -4.7318 34 1 3.1263 -0.7995 1.2055 35 1 1.6054 -1.7199 1.2950 36 1 0.6474 0.1019 2.5225 37 1 3.7297 0.1837 5.1363 38 1 2.9726 1.9059 2.6269 39 1 4.1155 2.4103 3.9835 40 1 5.6141 0.4327 3.4568 41 1 4.4716 -0.0722 2.1000 42 1 0.1156 0.9159 5.9402 43 1 1.6586 1.5031 5.2746 44 1 -0.2150 2.3427 4.0534 45 1 2.1510 -2.1724 5.8228 46 1 2.6409 -0.5544 6.3833 47 1 0.4165 -0.2086 7.3881 48 1 1.1460 -1.7023 8.0247 49 1 -1.3647 -0.3985 5.7466 50 1 -1.8786 -2.0248 5.2369 51 1 -0.4958 -0.8923 3.4925 52 1 0.2834 -2.3733 4.1005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:22 Heat of formation + Delta-G solvation = -81.756787 kcal Electronic energy + Delta-G solvation = -28382.128237 eV Core-core repulsion = 24767.954981 eV Total energy + Delta-G solvation = -3614.173255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76532 -38.17785 -36.45762 -35.80059 -34.34782 -32.92389 -31.58869 -31.08874 -27.81932 -26.71570 -26.09300 -24.90902 -23.93786 -23.06327 -22.31096 -21.72680 -19.96524 -19.06753 -18.44446 -17.55191 -16.81689 -16.23598 -16.19301 -15.85879 -15.30542 -14.84239 -14.67089 -14.46140 -14.30487 -14.12528 -13.73840 -13.31749 -13.14949 -12.68354 -12.50273 -12.44000 -12.34710 -12.02020 -11.70741 -11.65705 -11.46478 -11.31882 -11.13693 -11.02677 -10.82516 -10.72165 -10.64671 -10.29300 -10.27616 -10.07874 -9.98857 -9.92860 -9.69996 -9.59989 -9.41271 -9.03499 -8.88239 -8.27700 -7.82139 -5.92614 -3.93377 3.37418 3.41582 3.44191 3.65254 3.96265 4.05054 4.41364 4.48375 4.52190 4.66898 4.74383 4.83271 4.97729 4.99985 5.08240 5.18137 5.27257 5.29999 5.34227 5.40114 5.43058 5.45513 5.50218 5.59556 5.68823 5.78480 5.82863 5.85210 5.92102 5.98349 6.02642 6.04867 6.11144 6.19155 6.22899 6.35090 6.48115 6.63280 6.73019 6.76058 6.96880 7.09820 7.21355 7.28269 7.59538 7.60731 7.76221 7.92808 8.08466 8.11762 8.52886 9.12990 9.69590 11.18916 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.003335 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.999985 B = 8392.705543 C = 8919.091120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 H 0.063 0.937 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.060 3.940 14 N -0.670 5.670 15 C 0.130 3.870 16 H 0.049 0.951 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.183 4.183 20 C -0.061 4.061 21 C 0.091 3.909 22 O -0.553 6.553 23 C -0.144 4.144 24 C 0.059 3.941 25 O -0.384 6.384 26 C 0.063 3.937 27 C -0.147 4.147 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.013 0.987 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.064 0.936 35 H 0.016 0.984 36 H 0.355 0.645 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.035 0.965 43 H 0.052 0.948 44 H 0.374 0.626 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.092 0.908 51 H 0.085 0.915 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 3.637 24.019 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 H 0.081 0.919 4 C -0.009 4.009 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.069 4.069 14 N -0.308 5.308 15 C 0.019 3.981 16 H 0.067 0.933 17 C -0.171 4.171 18 C -0.192 4.192 19 C -0.220 4.220 20 C -0.062 4.062 21 C 0.013 3.987 22 O -0.357 6.357 23 C -0.183 4.183 24 C -0.018 4.018 25 O -0.303 6.303 26 C -0.013 4.013 27 C -0.185 4.185 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.181 0.819 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.221 0.779 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.070 0.930 50 H 0.110 0.890 51 H 0.104 0.896 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.653 3.216 23.650 24.015 hybrid contribution -0.568 0.383 -0.741 1.009 sum -3.221 3.598 22.909 23.413 Atomic orbital electron populations 1.21715 0.96805 1.00151 1.00299 1.21146 0.94771 0.99850 0.93971 0.91865 1.19105 0.95970 0.95311 0.90551 1.21211 1.34473 1.08211 0.91025 0.92672 1.25016 0.95404 0.95092 0.99040 1.69960 1.39158 1.21261 1.23377 0.86707 0.78841 0.80155 0.82573 1.20307 1.21431 1.20337 1.22294 0.99937 0.94205 0.90416 1.60557 1.17541 1.52512 1.00182 1.20881 0.91939 0.95604 0.89633 0.93281 1.22371 0.97077 1.01369 0.96320 1.22881 1.02623 0.90050 1.03670 1.22959 0.94219 1.04149 1.00685 1.20853 0.95539 0.94018 0.95759 1.22150 0.95249 0.93662 0.87666 1.86431 1.77003 1.32598 1.39714 1.22252 0.98729 1.02256 0.95023 1.22621 0.86637 0.96154 0.96412 1.87929 1.44844 1.51626 1.45904 1.22575 0.94974 0.98668 0.85128 1.22227 0.96220 1.00578 0.99425 0.94410 0.94538 0.92238 0.96875 0.96952 0.93117 0.91780 0.96528 0.81893 0.88813 0.86251 0.90906 0.90116 0.88395 0.94721 0.92983 0.77879 0.90370 0.90274 0.93223 0.88962 0.93004 0.88958 0.89618 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.63 2.55 -90.62 -0.23 -1.86 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.06 4.74 -3.82 -0.02 1.05 16 14 N -0.67 -9.61 3.70 -106.72 -0.40 -10.00 16 15 C 0.13 1.60 1.77 -67.71 -0.12 1.48 16 16 H 0.05 0.68 7.64 -51.93 -0.40 0.29 16 17 C -0.15 -1.77 4.23 -90.62 -0.38 -2.15 16 18 C -0.16 -1.95 9.57 -26.74 -0.26 -2.20 16 19 C -0.18 -2.41 10.05 -26.73 -0.27 -2.68 16 20 C -0.06 -0.61 0.29 -154.33 -0.04 -0.65 16 21 C 0.09 0.81 5.20 37.16 0.19 1.01 16 22 O -0.55 -5.39 10.01 -35.23 -0.35 -5.74 16 23 C -0.14 -1.25 4.60 -26.59 -0.12 -1.37 16 24 C 0.06 0.48 6.57 37.21 0.24 0.73 16 25 O -0.38 -4.11 10.77 -35.23 -0.38 -4.49 16 26 C 0.06 0.61 6.57 37.20 0.24 0.86 16 27 C -0.15 -1.59 4.54 -26.59 -0.12 -1.71 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.61 6.81 -51.93 -0.35 0.26 16 30 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.06 1.18 5.79 -51.93 -0.30 0.88 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.36 5.10 2.79 -39.30 -0.11 4.99 16 37 H 0.09 0.95 6.18 -51.93 -0.32 0.63 16 38 H 0.12 1.76 6.97 -51.93 -0.36 1.40 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.51 5.79 -51.93 -0.30 1.21 16 42 H 0.03 0.28 5.05 -51.93 -0.26 0.01 16 43 H 0.05 0.47 6.78 -51.93 -0.35 0.12 16 44 H 0.37 2.35 9.12 45.56 0.42 2.77 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.59 6.33 -51.93 -0.33 0.26 16 47 H 0.05 0.36 6.48 -51.93 -0.34 0.03 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.47 6.74 -51.93 -0.35 0.12 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 1.03 5.96 -51.93 -0.31 0.72 16 52 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -30.93 376.68 -8.99 -39.92 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.18 Total: 6.74 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.07 Total: -22.43 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.34 Total: -36.65 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.73 Total: -10.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.93 -8.99 -39.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.840 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds