Wall clock time and date at job start Fri Apr 10 2020 22:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46865 * 2 1 4 4 C 1.52999 * 109.46940 * 240.00479 * 2 1 3 5 5 C 1.50693 * 109.47562 * 65.00140 * 4 2 1 6 6 H 1.08007 * 120.00140 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00251 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00020 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46884 * 60.00019 * 9 7 5 11 11 H 1.48492 * 109.47024 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47349 * 299.99961 * 9 7 5 13 13 C 1.53001 * 109.46931 * 120.00434 * 2 1 3 14 14 N 1.46901 * 109.46808 * 295.00128 * 13 2 1 15 15 C 1.46904 * 110.99604 * 185.52098 * 14 13 2 16 16 H 1.08995 * 109.47384 * 341.17392 * 15 14 13 17 17 C 1.53007 * 109.47166 * 101.17517 * 15 14 13 18 18 C 1.52994 * 117.49676 * 10.69464 * 17 15 14 19 19 C 1.52997 * 60.00482 * 252.51480 * 18 17 15 20 20 C 1.53000 * 109.47050 * 221.17145 * 15 14 13 21 21 C 1.53005 * 109.54486 * 300.00433 * 20 15 14 22 22 O 1.42897 * 109.47240 * 65.86351 * 21 20 15 23 23 C 1.53171 * 109.54564 * 179.82255 * 20 15 14 24 24 C 1.53106 * 109.16071 * 183.24247 * 23 20 15 25 25 O 1.42906 * 109.48313 * 57.47321 * 24 23 20 26 26 C 1.42895 * 114.09660 * 298.88616 * 25 24 23 27 27 C 1.53091 * 109.41322 * 61.16550 * 26 25 24 28 28 H 1.08997 * 109.47168 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47299 * 299.99994 * 1 2 3 30 30 H 1.08999 * 109.47257 * 59.99932 * 1 2 3 31 31 H 1.09005 * 109.46764 * 185.00490 * 4 2 1 32 32 H 1.09001 * 109.47211 * 304.99728 * 4 2 1 33 33 H 0.97009 * 119.99777 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46564 * 175.00138 * 13 2 1 35 35 H 1.08995 * 109.47106 * 55.00200 * 13 2 1 36 36 H 1.00891 * 111.00271 * 61.56867 * 14 13 2 37 37 H 1.08997 * 115.55016 * 156.40650 * 17 15 14 38 38 H 1.09001 * 117.50086 * 0.02562 * 18 17 15 39 39 H 1.09005 * 117.49831 * 145.02106 * 18 17 15 40 40 H 1.08998 * 117.49950 * 252.52083 * 19 18 17 41 41 H 1.09001 * 117.51680 * 107.47823 * 19 18 17 42 42 H 1.08997 * 109.47013 * 185.86979 * 21 20 15 43 43 H 1.09007 * 109.46421 * 305.86636 * 21 20 15 44 44 H 0.96703 * 113.99682 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.52665 * 303.06159 * 23 20 15 46 46 H 1.09003 * 109.52379 * 63.24698 * 23 20 15 47 47 H 1.08997 * 109.40464 * 297.49486 * 24 23 20 48 48 H 1.08994 * 109.49653 * 177.50915 * 24 23 20 49 49 H 1.08998 * 109.48987 * 301.17688 * 26 25 24 50 50 H 1.09003 * 109.48735 * 181.14634 * 26 25 24 51 51 H 1.09003 * 109.52514 * 182.47927 * 27 26 25 52 52 H 1.09002 * 109.57664 * 62.32690 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9933 -0.4015 -3.7283 8 7 2.6764 -1.5185 -3.8512 9 14 1.4985 0.5630 -5.2496 10 1 2.0897 1.9239 -5.1869 11 1 1.9947 -0.1363 -6.4620 12 1 0.0185 0.6685 -5.3093 13 6 2.0400 -0.7214 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.2350 -0.5545 3.6568 16 1 2.5357 -1.5817 3.4508 17 6 3.4586 0.2592 4.0833 18 6 3.6914 1.6019 3.3879 19 6 4.5953 0.4091 3.0701 20 6 1.1975 -0.5426 4.7813 21 6 0.7743 0.8988 5.0719 22 8 0.0836 1.4300 3.9394 23 6 1.8030 -1.1634 6.0438 24 6 0.7336 -1.2210 7.1380 25 8 -0.3893 -1.9697 6.6680 26 6 -1.0245 -1.4084 5.5177 27 6 -0.0265 -1.3604 4.3578 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1264 -0.7994 -1.2056 32 1 1.6054 -1.7197 -1.2953 33 1 2.9243 -1.8410 -4.7318 34 1 3.1263 -0.7995 1.2055 35 1 1.6054 -1.7199 1.2950 36 1 0.6474 0.1019 2.5225 37 1 3.7297 0.1837 5.1363 38 1 2.9726 1.9059 2.6269 39 1 4.1155 2.4103 3.9835 40 1 5.6141 0.4327 3.4568 41 1 4.4716 -0.0722 2.1000 42 1 0.1156 0.9159 5.9402 43 1 1.6586 1.5031 5.2746 44 1 -0.2150 2.3427 4.0534 45 1 2.1510 -2.1724 5.8228 46 1 2.6409 -0.5544 6.3833 47 1 0.4165 -0.2086 7.3881 48 1 1.1460 -1.7023 8.0247 49 1 -1.3647 -0.3985 5.7466 50 1 -1.8786 -2.0248 5.2369 51 1 -0.4958 -0.8923 3.4925 52 1 0.2834 -2.3733 4.1005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602676230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:21 Heat of formation + Delta-G solvation = -101.691922 kcal Electronic energy + Delta-G solvation = -28382.992689 eV Core-core repulsion = 24767.954981 eV Total energy + Delta-G solvation = -3615.037708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.60809 -39.16260 -37.49551 -37.13442 -35.32710 -34.69433 -33.04343 -31.99619 -29.21215 -28.32750 -27.06211 -26.32313 -24.84835 -24.30121 -23.55590 -22.92295 -20.94328 -20.66352 -19.43681 -18.59811 -18.19400 -17.61038 -16.94061 -16.80593 -16.59480 -16.09973 -15.84580 -15.70773 -15.41574 -15.14470 -14.91900 -14.56386 -14.36150 -14.17974 -13.93390 -13.36944 -13.33732 -13.22587 -13.16261 -13.06204 -12.77772 -12.68790 -12.58022 -12.28162 -12.23699 -12.11241 -11.91803 -11.79413 -11.49505 -11.42891 -11.09095 -11.05943 -10.91208 -10.83594 -10.81857 -10.56043 -10.53197 -10.18158 -9.07226 -8.17158 -6.26666 1.39295 1.42656 1.50236 2.42001 2.95106 3.03081 3.15889 3.20576 3.50680 3.64713 3.84476 3.90089 4.06079 4.13325 4.22864 4.24031 4.27281 4.29759 4.32604 4.38615 4.46740 4.50833 4.61317 4.66546 4.71963 4.72973 4.74193 4.84646 4.85777 4.90049 4.92238 4.98524 5.06073 5.08234 5.15942 5.20300 5.23268 5.26644 5.34384 5.40699 5.43945 5.49103 5.58894 5.70129 5.81865 5.89894 6.23805 6.27959 6.36385 6.81188 6.89120 7.17482 7.41517 8.94871 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.003335 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.999985 B = 8392.705543 C = 8919.091120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.067 4.067 3 H 0.055 0.945 4 C 0.035 3.965 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.075 3.925 14 N -0.660 5.660 15 C 0.127 3.873 16 H 0.029 0.971 17 C -0.136 4.136 18 C -0.150 4.150 19 C -0.201 4.201 20 C -0.057 4.057 21 C 0.095 3.905 22 O -0.572 6.572 23 C -0.141 4.141 24 C 0.055 3.945 25 O -0.403 6.403 26 C 0.067 3.933 27 C -0.145 4.145 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.043 0.957 31 H -0.018 1.018 32 H -0.016 1.016 33 H 0.262 0.738 34 H 0.052 0.948 35 H 0.006 0.994 36 H 0.357 0.643 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.390 0.610 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.072 0.928 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 5.550 26.021 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.054 4.054 14 N -0.297 5.297 15 C 0.017 3.983 16 H 0.047 0.953 17 C -0.155 4.155 18 C -0.187 4.187 19 C -0.238 4.238 20 C -0.058 4.058 21 C 0.017 3.983 22 O -0.380 6.380 23 C -0.179 4.179 24 C -0.021 4.021 25 O -0.322 6.322 26 C -0.010 4.010 27 C -0.183 4.183 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.000 1.000 32 H 0.003 0.997 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.184 0.816 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.240 0.760 45 H 0.084 0.916 46 H 0.116 0.884 47 H 0.084 0.916 48 H 0.126 0.874 49 H 0.083 0.917 50 H 0.113 0.887 51 H 0.091 0.909 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.504 5.149 25.674 26.419 hybrid contribution -0.269 -0.251 -1.349 1.398 sum -3.773 4.898 24.325 25.098 Atomic orbital electron populations 1.21593 0.95177 1.00131 1.00984 1.20920 0.95970 0.98719 0.92963 0.92652 1.18989 0.93884 0.94398 0.93020 1.21601 1.34445 1.08550 0.92020 0.92059 1.25977 0.95242 0.96102 1.02710 1.70108 1.40318 1.23025 1.24300 0.85546 0.78979 0.78765 0.78045 1.19210 1.21023 1.19104 1.21971 0.98968 0.93605 0.90901 1.60516 1.17791 1.51668 0.99756 1.20954 0.93178 0.94543 0.89628 0.95294 1.22421 0.95617 1.00289 0.97171 1.22808 1.01808 0.90660 1.03393 1.22938 0.95711 1.05084 1.00022 1.20820 0.94340 0.95265 0.95356 1.22128 0.95820 0.92409 0.87945 1.86371 1.77180 1.34057 1.40362 1.22236 0.99471 1.01773 0.94389 1.22805 0.85728 0.97056 0.96487 1.87913 1.45703 1.52639 1.45965 1.22562 0.94550 0.99419 0.84422 1.22173 0.96982 0.99477 0.99645 0.94769 0.91505 0.93739 0.99951 0.99728 0.92976 0.92999 0.97605 0.81610 0.86130 0.88529 0.88722 0.88575 0.91514 0.92954 0.92491 0.76032 0.91580 0.88447 0.91605 0.87378 0.91723 0.88714 0.90911 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 8.77 71.98 0.63 -4.07 16 2 C -0.07 -2.87 2.55 -10.79 -0.03 -2.90 16 3 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.03 1.91 4.45 29.85 0.13 2.04 16 5 C -0.53 -30.75 8.41 25.60 0.22 -30.54 16 6 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 9 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.07 2.78 4.74 86.30 0.41 3.19 16 14 N -0.66 -18.92 3.70 -491.56 -1.82 -20.74 16 15 C 0.13 3.07 1.77 44.92 0.08 3.15 16 16 H 0.03 0.83 7.64 -2.39 -0.02 0.81 16 17 C -0.14 -2.94 4.23 -10.79 -0.05 -2.99 16 18 C -0.15 -3.53 9.57 30.59 0.29 -3.23 16 19 C -0.20 -5.21 10.05 30.60 0.31 -4.90 16 20 C -0.06 -1.05 0.29 -52.06 -0.01 -1.06 16 21 C 0.09 1.41 5.20 71.98 0.37 1.79 16 22 O -0.57 -9.78 10.01 -148.98 -1.49 -11.27 16 23 C -0.14 -2.08 4.60 30.69 0.14 -1.94 16 24 C 0.06 0.74 6.57 72.02 0.47 1.22 16 25 O -0.40 -7.81 10.77 -148.98 -1.60 -9.41 16 26 C 0.07 1.19 6.57 72.01 0.47 1.66 16 27 C -0.14 -3.03 4.54 30.68 0.14 -2.89 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.17 6.81 -2.39 -0.02 2.15 16 30 H 0.04 1.84 6.95 -2.39 -0.02 1.82 16 31 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 32 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 34 H 0.05 2.05 5.79 -2.39 -0.01 2.04 16 35 H 0.01 0.22 8.14 -2.39 -0.02 0.21 16 36 H 0.36 10.05 2.79 -89.70 -0.25 9.80 16 37 H 0.12 2.01 6.18 -2.39 -0.01 1.99 16 38 H 0.10 2.78 6.97 -2.39 -0.02 2.76 16 39 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 2.17 5.79 -2.39 -0.01 2.15 16 42 H 0.05 0.62 5.05 -2.39 -0.01 0.61 16 43 H 0.06 0.82 6.78 -2.38 -0.02 0.80 16 44 H 0.39 3.83 9.12 -74.06 -0.68 3.15 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.10 1.09 6.33 -2.39 -0.02 1.08 16 47 H 0.07 0.69 6.48 -2.39 -0.02 0.68 16 48 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 0.98 6.74 -2.39 -0.02 0.97 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 51 H 0.07 1.70 5.96 -2.39 -0.01 1.69 16 52 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -68.82 376.68 1.43 -67.39 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.01 Total: 26.31 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 4.04 Total: -41.22 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.53 Total: -79.24 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -3.10 Total: -20.68 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.82 1.43 -67.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.299 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds