Wall clock time and date at job start Fri Apr 10 2020 22:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47427 * 2 1 4 4 C 1.52998 * 109.47246 * 120.00441 * 2 1 3 5 5 C 1.50701 * 109.47053 * 294.99636 * 4 2 1 6 6 H 1.08004 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00267 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99999 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47223 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47165 * 120.00027 * 9 7 5 12 12 H 1.48503 * 109.47441 * 240.00203 * 9 7 5 13 13 C 1.53000 * 109.47138 * 239.99862 * 2 1 3 14 14 N 1.46904 * 109.47049 * 65.00239 * 13 2 1 15 15 C 1.46895 * 111.00252 * 183.65971 * 14 13 2 16 16 H 1.08997 * 109.47024 * 340.65490 * 15 14 13 17 17 C 1.53000 * 109.47156 * 100.65391 * 15 14 13 18 18 C 1.53002 * 117.49862 * 10.36279 * 17 15 14 19 19 C 1.53005 * 117.49895 * 301.73908 * 17 15 14 20 20 C 1.53005 * 109.47314 * 220.65121 * 15 14 13 21 21 C 1.52997 * 109.54420 * 300.00222 * 20 15 14 22 22 O 1.42902 * 109.47091 * 65.79555 * 21 20 15 23 23 C 1.53178 * 109.54245 * 179.82286 * 20 15 14 24 24 C 1.53102 * 109.15248 * 183.24302 * 23 20 15 25 25 O 1.42902 * 109.49147 * 57.47311 * 24 23 20 26 26 C 1.42894 * 114.09765 * 298.89137 * 25 24 23 27 27 C 1.53096 * 109.42028 * 61.15437 * 26 25 24 28 28 H 1.09008 * 109.46887 * 299.99995 * 1 2 3 29 29 H 1.08999 * 109.46744 * 59.99442 * 1 2 3 30 30 H 1.08999 * 109.47427 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47484 * 54.99540 * 4 2 1 32 32 H 1.09000 * 109.47457 * 175.00073 * 4 2 1 33 33 H 0.97001 * 119.99685 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47164 * 305.00297 * 13 2 1 35 35 H 1.08999 * 109.47508 * 184.99904 * 13 2 1 36 36 H 1.00908 * 111.00211 * 59.70147 * 14 13 2 37 37 H 1.08995 * 115.55328 * 156.07070 * 17 15 14 38 38 H 1.08995 * 117.50105 * 359.97438 * 18 17 15 39 39 H 1.09000 * 117.50212 * 145.02282 * 18 17 15 40 40 H 1.08997 * 117.50164 * 214.97583 * 19 17 15 41 41 H 1.09004 * 117.49666 * 359.97438 * 19 17 15 42 42 H 1.09000 * 109.47610 * 185.79739 * 21 20 15 43 43 H 1.09003 * 109.47083 * 305.80245 * 21 20 15 44 44 H 0.96701 * 113.99844 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.52474 * 303.05909 * 23 20 15 46 46 H 1.09000 * 109.51936 * 63.25176 * 23 20 15 47 47 H 1.09004 * 109.40947 * 297.49274 * 24 23 20 48 48 H 1.09005 * 109.49107 * 177.50813 * 24 23 20 49 49 H 1.09007 * 109.48302 * 301.16834 * 26 25 24 50 50 H 1.09008 * 109.49004 * 181.14408 * 26 25 24 51 51 H 1.08994 * 109.52733 * 182.48634 * 27 26 25 52 52 H 1.08998 * 109.57137 * 62.32779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6755 -1.5195 3.8511 9 14 1.4989 0.5627 5.2496 10 1 0.7425 1.7744 4.8434 11 1 0.6442 -0.2857 6.1184 12 1 2.7173 0.9665 5.9965 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.0492 -0.6701 -3.6700 16 1 2.8231 -1.4000 -3.4326 17 6 0.8346 -1.3886 -4.2613 18 6 -0.5374 -1.0616 -3.6684 19 6 0.1197 -2.4122 -3.3769 20 6 2.5916 0.3360 -4.6871 21 6 1.5064 1.3614 -5.0215 22 8 1.2153 2.1425 -3.8608 23 6 3.0110 -0.4008 -5.9629 24 6 3.6267 0.6018 -6.9426 25 8 4.7355 1.2556 -6.3218 26 6 4.3932 1.9998 -5.1510 27 6 3.8103 1.0532 -4.0984 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -1.7199 1.2951 32 1 3.1263 -0.7996 1.2055 33 1 2.9221 -1.8428 4.7318 34 1 1.6053 -1.7198 -1.2951 35 1 3.1263 -0.7995 -1.2056 36 1 2.0383 0.9692 -2.4245 37 1 0.8850 -1.5952 -5.3303 38 1 -0.5748 -0.3349 -2.8569 39 1 -1.3900 -1.0528 -4.3475 40 1 -0.3006 -3.2920 -3.8642 41 1 0.5149 -2.5741 -2.3740 42 1 1.8574 2.0146 -5.8203 43 1 0.6042 0.8429 -5.3460 44 1 0.5345 2.8150 -3.9999 45 1 3.7469 -1.1661 -5.7164 46 1 2.1373 -0.8673 -6.4180 47 1 2.8774 1.3429 -7.2212 48 1 3.9675 0.0763 -7.8347 49 1 3.6539 2.7592 -5.4062 50 1 5.2861 2.4814 -4.7522 51 1 3.5078 1.6254 -3.2215 52 1 4.5625 0.3181 -3.8121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:26 Heat of formation + Delta-G solvation = -81.700459 kcal Electronic energy + Delta-G solvation = -28378.856132 eV Core-core repulsion = 24764.685319 eV Total energy + Delta-G solvation = -3614.170813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75635 -38.18621 -36.46536 -35.69191 -34.36713 -32.92565 -31.61385 -31.09533 -27.81862 -26.69676 -26.03122 -24.79482 -23.93899 -23.05682 -22.33602 -21.73899 -20.03720 -19.23240 -18.32932 -17.47913 -16.72645 -16.27668 -16.19645 -15.85372 -15.28509 -14.84347 -14.64576 -14.38323 -14.27182 -14.13993 -13.82172 -13.42444 -13.03847 -12.68808 -12.52540 -12.46786 -12.32144 -11.92355 -11.79616 -11.54451 -11.34454 -11.30876 -11.12744 -10.96981 -10.81815 -10.71663 -10.68282 -10.31091 -10.19023 -10.06351 -10.00962 -9.97304 -9.69122 -9.59074 -9.39696 -9.03406 -8.85311 -8.28523 -7.80778 -5.93162 -3.93746 3.34666 3.42142 3.46410 3.66266 3.96553 4.04384 4.41374 4.48903 4.52075 4.67379 4.74951 4.83581 4.98430 5.00326 5.08623 5.17784 5.26650 5.29326 5.34705 5.39980 5.42714 5.46249 5.50768 5.59676 5.69490 5.76779 5.81216 5.85836 5.92808 5.98253 6.05046 6.06374 6.11325 6.22311 6.26617 6.36018 6.63009 6.66108 6.72864 6.86029 6.98003 7.13717 7.28753 7.30980 7.59590 7.61198 7.75989 7.92009 8.07848 8.09836 8.52718 9.13142 9.69398 11.18451 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.003389 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.403232 B = 8258.912953 C = 8868.273407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 H 0.051 0.949 4 C 0.027 3.973 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.060 3.940 14 N -0.667 5.667 15 C 0.130 3.870 16 H 0.049 0.951 17 C -0.151 4.151 18 C -0.157 4.157 19 C -0.184 4.184 20 C -0.060 4.060 21 C 0.091 3.909 22 O -0.552 6.552 23 C -0.144 4.144 24 C 0.059 3.941 25 O -0.384 6.384 26 C 0.063 3.937 27 C -0.147 4.147 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.014 0.986 32 H 0.011 0.989 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.353 0.647 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.034 0.966 43 H 0.051 0.949 44 H 0.374 0.626 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.092 0.908 51 H 0.086 0.914 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 4.556 -23.990 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.011 4.011 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.069 4.069 14 N -0.304 5.304 15 C 0.020 3.980 16 H 0.067 0.933 17 C -0.170 4.170 18 C -0.194 4.194 19 C -0.221 4.221 20 C -0.061 4.061 21 C 0.013 3.987 22 O -0.357 6.357 23 C -0.183 4.183 24 C -0.018 4.018 25 O -0.303 6.303 26 C -0.013 4.013 27 C -0.184 4.184 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.178 0.822 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.221 0.779 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.070 0.930 50 H 0.111 0.889 51 H 0.105 0.895 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.803 3.829 -23.663 24.038 hybrid contribution 0.048 0.704 0.790 1.059 sum -1.755 4.533 -22.873 23.384 Atomic orbital electron populations 1.21571 0.95837 1.00267 0.99997 1.21123 0.95861 0.98776 0.93907 0.93049 1.19126 0.95795 0.95517 0.90643 1.21287 1.34277 1.08166 0.90994 0.92562 1.25023 0.95422 0.95108 0.99071 1.69983 1.39323 1.21305 1.23149 0.86593 0.78208 0.80159 0.83382 1.19761 1.21145 1.21164 1.22314 0.96615 0.97728 0.90254 1.60521 1.64083 1.06094 0.99680 1.20877 0.93571 0.93540 0.90022 0.93319 1.22364 0.94318 1.03347 0.97008 1.22939 0.93330 0.99290 1.03811 1.22959 1.05041 0.92861 1.01227 1.20843 0.94385 0.95164 0.95711 1.22141 0.97028 0.92223 0.87290 1.86441 1.61992 1.51813 1.35409 1.22252 1.01566 0.98861 0.95576 1.22619 0.89300 0.94539 0.95359 1.87929 1.33293 1.67259 1.41835 1.22580 1.00488 0.93064 0.85217 1.22225 0.96918 0.99760 0.99537 0.93116 0.93742 0.94433 0.96732 0.97115 0.93239 0.91789 0.96473 0.82214 0.88845 0.85988 0.90983 0.90179 0.88470 0.94760 0.93050 0.77921 0.90384 0.90311 0.93239 0.88991 0.93017 0.88948 0.89542 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.08 -1.61 2.51 -90.62 -0.23 -1.84 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.06 1.04 4.67 -3.82 -0.02 1.03 16 14 N -0.67 -9.36 3.17 -106.72 -0.34 -9.70 16 15 C 0.13 1.58 1.78 -67.71 -0.12 1.46 16 16 H 0.05 0.67 7.65 -51.93 -0.40 0.28 16 17 C -0.15 -1.72 4.22 -90.62 -0.38 -2.10 16 18 C -0.16 -1.90 9.60 -26.73 -0.26 -2.16 16 19 C -0.18 -2.34 10.05 -26.73 -0.27 -2.61 16 20 C -0.06 -0.60 0.29 -154.32 -0.04 -0.64 16 21 C 0.09 0.81 5.20 37.16 0.19 1.00 16 22 O -0.55 -5.32 10.02 -35.23 -0.35 -5.67 16 23 C -0.14 -1.24 4.60 -26.59 -0.12 -1.36 16 24 C 0.06 0.48 6.57 37.21 0.24 0.73 16 25 O -0.38 -4.15 10.77 -35.23 -0.38 -4.53 16 26 C 0.06 0.62 6.57 37.21 0.24 0.86 16 27 C -0.15 -1.59 4.54 -26.59 -0.12 -1.71 16 28 H 0.05 1.07 6.95 -51.92 -0.36 0.71 16 29 H 0.04 0.77 6.82 -51.93 -0.35 0.42 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.06 1.16 5.74 -51.93 -0.30 0.86 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.35 5.09 4.40 -39.29 -0.17 4.92 16 37 H 0.09 0.93 6.17 -51.93 -0.32 0.61 16 38 H 0.12 1.73 6.04 -51.93 -0.31 1.42 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.44 5.74 -51.93 -0.30 1.15 16 42 H 0.03 0.27 5.05 -51.93 -0.26 0.01 16 43 H 0.05 0.46 6.80 -51.93 -0.35 0.11 16 44 H 0.37 2.33 9.12 45.56 0.42 2.74 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.59 6.32 -51.93 -0.33 0.26 16 47 H 0.05 0.36 6.48 -51.93 -0.34 0.03 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.47 6.74 -51.93 -0.35 0.12 16 50 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 51 H 0.09 1.04 5.95 -51.93 -0.31 0.73 16 52 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -30.87 376.80 -8.93 -39.80 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.19 Total: 6.16 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -1.06 Total: -22.05 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.40 Total: -36.36 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.73 Total: -10.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.87 -8.93 -39.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.900 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds