Wall clock time and date at job start Fri Apr 10 2020 22:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47427 * 2 1 4 4 C 1.52998 * 109.47246 * 120.00441 * 2 1 3 5 5 C 1.50701 * 109.47053 * 294.99636 * 4 2 1 6 6 H 1.08004 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00267 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99999 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47223 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47165 * 120.00027 * 9 7 5 12 12 H 1.48503 * 109.47441 * 240.00203 * 9 7 5 13 13 C 1.53000 * 109.47138 * 239.99862 * 2 1 3 14 14 N 1.46904 * 109.47049 * 65.00239 * 13 2 1 15 15 C 1.46895 * 111.00252 * 183.65971 * 14 13 2 16 16 H 1.08997 * 109.47024 * 340.65490 * 15 14 13 17 17 C 1.53000 * 109.47156 * 100.65391 * 15 14 13 18 18 C 1.53002 * 117.49862 * 10.36279 * 17 15 14 19 19 C 1.53005 * 117.49895 * 301.73908 * 17 15 14 20 20 C 1.53005 * 109.47314 * 220.65121 * 15 14 13 21 21 C 1.52997 * 109.54420 * 300.00222 * 20 15 14 22 22 O 1.42902 * 109.47091 * 65.79555 * 21 20 15 23 23 C 1.53178 * 109.54245 * 179.82286 * 20 15 14 24 24 C 1.53102 * 109.15248 * 183.24302 * 23 20 15 25 25 O 1.42902 * 109.49147 * 57.47311 * 24 23 20 26 26 C 1.42894 * 114.09765 * 298.89137 * 25 24 23 27 27 C 1.53096 * 109.42028 * 61.15437 * 26 25 24 28 28 H 1.09008 * 109.46887 * 299.99995 * 1 2 3 29 29 H 1.08999 * 109.46744 * 59.99442 * 1 2 3 30 30 H 1.08999 * 109.47427 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47484 * 54.99540 * 4 2 1 32 32 H 1.09000 * 109.47457 * 175.00073 * 4 2 1 33 33 H 0.97001 * 119.99685 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47164 * 305.00297 * 13 2 1 35 35 H 1.08999 * 109.47508 * 184.99904 * 13 2 1 36 36 H 1.00908 * 111.00211 * 59.70147 * 14 13 2 37 37 H 1.08995 * 115.55328 * 156.07070 * 17 15 14 38 38 H 1.08995 * 117.50105 * 359.97438 * 18 17 15 39 39 H 1.09000 * 117.50212 * 145.02282 * 18 17 15 40 40 H 1.08997 * 117.50164 * 214.97583 * 19 17 15 41 41 H 1.09004 * 117.49666 * 359.97438 * 19 17 15 42 42 H 1.09000 * 109.47610 * 185.79739 * 21 20 15 43 43 H 1.09003 * 109.47083 * 305.80245 * 21 20 15 44 44 H 0.96701 * 113.99844 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.52474 * 303.05909 * 23 20 15 46 46 H 1.09000 * 109.51936 * 63.25176 * 23 20 15 47 47 H 1.09004 * 109.40947 * 297.49274 * 24 23 20 48 48 H 1.09005 * 109.49107 * 177.50813 * 24 23 20 49 49 H 1.09007 * 109.48302 * 301.16834 * 26 25 24 50 50 H 1.09008 * 109.49004 * 181.14408 * 26 25 24 51 51 H 1.08994 * 109.52733 * 182.48634 * 27 26 25 52 52 H 1.08998 * 109.57137 * 62.32779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6755 -1.5195 3.8511 9 14 1.4989 0.5627 5.2496 10 1 0.7425 1.7744 4.8434 11 1 0.6442 -0.2857 6.1184 12 1 2.7173 0.9665 5.9965 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.0492 -0.6701 -3.6700 16 1 2.8231 -1.4000 -3.4326 17 6 0.8346 -1.3886 -4.2613 18 6 -0.5374 -1.0616 -3.6684 19 6 0.1197 -2.4122 -3.3769 20 6 2.5916 0.3360 -4.6871 21 6 1.5064 1.3614 -5.0215 22 8 1.2153 2.1425 -3.8608 23 6 3.0110 -0.4008 -5.9629 24 6 3.6267 0.6018 -6.9426 25 8 4.7355 1.2556 -6.3218 26 6 4.3932 1.9998 -5.1510 27 6 3.8103 1.0532 -4.0984 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -1.7199 1.2951 32 1 3.1263 -0.7996 1.2055 33 1 2.9221 -1.8428 4.7318 34 1 1.6053 -1.7198 -1.2951 35 1 3.1263 -0.7995 -1.2056 36 1 2.0383 0.9692 -2.4245 37 1 0.8850 -1.5952 -5.3303 38 1 -0.5748 -0.3349 -2.8569 39 1 -1.3900 -1.0528 -4.3475 40 1 -0.3006 -3.2920 -3.8642 41 1 0.5149 -2.5741 -2.3740 42 1 1.8574 2.0146 -5.8203 43 1 0.6042 0.8429 -5.3460 44 1 0.5345 2.8150 -3.9999 45 1 3.7469 -1.1661 -5.7164 46 1 2.1373 -0.8673 -6.4180 47 1 2.8774 1.3429 -7.2212 48 1 3.9675 0.0763 -7.8347 49 1 3.6539 2.7592 -5.4062 50 1 5.2861 2.4814 -4.7522 51 1 3.5078 1.6254 -3.2215 52 1 4.5625 0.3181 -3.8121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602676232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:26 Heat of formation + Delta-G solvation = -101.470921 kcal Electronic energy + Delta-G solvation = -28379.713443 eV Core-core repulsion = 24764.685319 eV Total energy + Delta-G solvation = -3615.028124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59725 -39.16612 -37.45424 -37.07471 -35.32351 -34.68674 -33.08650 -31.99673 -29.21226 -28.29917 -26.98518 -26.23606 -24.86758 -24.30478 -23.55090 -22.88874 -21.14815 -20.62585 -19.32558 -18.53668 -18.18272 -17.55800 -16.94362 -16.86473 -16.57120 -16.04711 -15.74693 -15.62242 -15.52540 -15.27205 -14.92390 -14.53003 -14.31194 -14.18735 -13.93536 -13.37033 -13.29497 -13.19772 -13.07664 -13.00059 -12.76149 -12.64560 -12.60536 -12.32792 -12.22267 -11.95715 -11.91650 -11.83706 -11.48264 -11.43279 -11.08734 -11.04673 -10.90047 -10.82784 -10.76574 -10.54747 -10.54317 -10.17936 -9.05658 -8.17766 -6.27075 1.39202 1.39379 1.52916 2.41635 2.95187 3.04605 3.15467 3.21259 3.51733 3.65204 3.85584 3.90683 4.06114 4.12930 4.19684 4.25827 4.28733 4.32841 4.35931 4.39694 4.50434 4.53072 4.62049 4.67850 4.72988 4.74734 4.79583 4.83296 4.87996 4.91367 5.01639 5.03279 5.05621 5.07917 5.16350 5.22817 5.25792 5.29286 5.35190 5.47033 5.48612 5.51541 5.59896 5.75808 5.85175 5.89428 6.23507 6.27643 6.36416 6.78615 6.89181 7.17972 7.41271 8.94671 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.003389 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.403232 B = 8258.912953 C = 8868.273407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.067 4.067 3 H 0.047 0.953 4 C 0.033 3.967 5 C -0.525 4.525 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.075 3.925 14 N -0.654 5.654 15 C 0.128 3.872 16 H 0.027 0.973 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.199 4.199 20 C -0.056 4.056 21 C 0.096 3.904 22 O -0.571 6.571 23 C -0.140 4.140 24 C 0.055 3.945 25 O -0.403 6.403 26 C 0.067 3.933 27 C -0.145 4.145 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.030 0.970 31 H -0.014 1.014 32 H -0.020 1.020 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.000 1.000 36 H 0.354 0.646 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.390 0.610 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.093 0.907 51 H 0.072 0.928 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 6.058 -25.990 26.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.005 4.005 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.054 4.054 14 N -0.290 5.290 15 C 0.018 3.982 16 H 0.045 0.955 17 C -0.157 4.157 18 C -0.187 4.187 19 C -0.236 4.236 20 C -0.057 4.057 21 C 0.018 3.982 22 O -0.379 6.379 23 C -0.178 4.178 24 C -0.021 4.021 25 O -0.323 6.323 26 C -0.009 4.009 27 C -0.183 4.183 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.005 0.995 32 H -0.002 1.002 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.179 0.821 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.239 0.761 45 H 0.083 0.917 46 H 0.116 0.884 47 H 0.084 0.916 48 H 0.126 0.874 49 H 0.083 0.917 50 H 0.111 0.889 51 H 0.090 0.910 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.318 5.347 -25.685 26.445 hybrid contribution 0.550 0.192 1.398 1.515 sum -2.768 5.540 -24.287 25.064 Atomic orbital electron populations 1.21427 0.94415 0.99974 1.00435 1.20916 0.96828 0.97922 0.92907 0.93430 1.19014 0.93703 0.94613 0.93125 1.21656 1.34240 1.08459 0.92002 0.92075 1.25981 0.95268 0.96122 1.02732 1.70123 1.40453 1.23053 1.24167 0.85434 0.78066 0.78909 0.78872 1.18448 1.20506 1.20535 1.21993 0.95272 0.97461 0.90717 1.60497 1.63624 1.05777 0.99086 1.20940 0.93734 0.93748 0.89764 0.95468 1.22394 0.93357 1.01993 0.97909 1.22879 0.94301 0.97960 1.03567 1.22938 1.06264 0.94065 1.00358 1.20809 0.94337 0.94991 0.95562 1.22112 0.96610 0.92101 0.87381 1.86391 1.62866 1.52524 1.36085 1.22233 1.02031 0.98637 0.94929 1.22810 0.89127 0.94754 0.95408 1.87911 1.34824 1.67587 1.41948 1.22557 1.00847 0.92825 0.84710 1.22166 0.96993 0.99483 0.99620 0.94726 0.91031 0.95067 0.99517 1.00182 0.92993 0.92434 0.98210 0.82150 0.86314 0.87925 0.88886 0.88704 0.91342 0.93126 0.92393 0.76087 0.91667 0.88386 0.91597 0.87399 0.91714 0.88852 0.90965 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.89 71.98 0.64 -3.49 16 2 C -0.07 -2.86 2.51 -10.80 -0.03 -2.88 16 3 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.03 1.81 4.45 29.85 0.13 1.95 16 5 C -0.53 -30.59 8.41 25.60 0.22 -30.37 16 6 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 9 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 C 0.07 2.75 4.67 86.30 0.40 3.15 16 14 N -0.65 -18.34 3.17 -491.57 -1.56 -19.90 16 15 C 0.13 3.04 1.78 44.92 0.08 3.12 16 16 H 0.03 0.78 7.65 -2.39 -0.02 0.76 16 17 C -0.14 -2.86 4.22 -10.79 -0.05 -2.90 16 18 C -0.15 -3.32 9.60 30.60 0.29 -3.02 16 19 C -0.20 -4.89 10.05 30.60 0.31 -4.58 16 20 C -0.06 -1.03 0.29 -52.06 -0.01 -1.05 16 21 C 0.10 1.42 5.20 71.98 0.37 1.79 16 22 O -0.57 -9.73 10.02 -148.98 -1.49 -11.22 16 23 C -0.14 -2.09 4.60 30.69 0.14 -1.95 16 24 C 0.06 0.76 6.57 72.02 0.47 1.23 16 25 O -0.40 -8.01 10.77 -148.98 -1.60 -9.62 16 26 C 0.07 1.23 6.57 72.01 0.47 1.70 16 27 C -0.14 -3.10 4.54 30.69 0.14 -2.96 16 28 H 0.03 1.45 6.95 -2.38 -0.02 1.43 16 29 H 0.07 2.41 6.82 -2.39 -0.02 2.39 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.06 2.20 5.74 -2.39 -0.01 2.18 16 35 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.35 10.13 4.40 -89.69 -0.39 9.73 16 37 H 0.12 1.91 6.17 -2.39 -0.01 1.90 16 38 H 0.10 2.72 6.04 -2.39 -0.01 2.71 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 2.09 5.74 -2.39 -0.01 2.08 16 42 H 0.05 0.61 5.05 -2.39 -0.01 0.60 16 43 H 0.06 0.81 6.80 -2.39 -0.02 0.79 16 44 H 0.39 3.80 9.12 -74.06 -0.68 3.12 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.10 1.09 6.32 -2.39 -0.02 1.08 16 47 H 0.07 0.71 6.48 -2.39 -0.02 0.69 16 48 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.06 1.02 6.74 -2.38 -0.02 1.01 16 50 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 51 H 0.07 1.75 5.95 -2.39 -0.01 1.73 16 52 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -68.50 376.80 1.55 -66.95 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.15 Total: 24.83 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 4.05 Total: -40.05 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.28 Total: -78.38 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -3.10 Total: -20.84 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.50 1.55 -66.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.518 kcal (2) G-P(sol) polarization free energy of solvation -68.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds