Wall clock time and date at job start Fri Apr 10 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.53003 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46780 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47298 * 304.99579 * 5 4 3 7 7 C 1.53003 * 109.47341 * 65.00066 * 5 4 3 8 8 C 1.52996 * 109.47025 * 186.41761 * 7 5 4 9 9 C 1.53004 * 109.46624 * 184.99835 * 5 4 3 10 10 O 1.45204 * 109.46902 * 173.49408 * 9 5 4 11 11 C 1.34641 * 116.99960 * 180.02562 * 10 9 5 12 12 O 1.21510 * 119.99633 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00117 * 179.97438 * 11 10 9 14 14 C 1.46935 * 120.62995 * 359.97438 * 13 11 10 15 15 C 1.53188 * 108.77194 * 233.63284 * 14 13 11 16 16 C 1.53044 * 109.31226 * 305.36261 * 15 14 13 17 17 C 1.53037 * 109.54009 * 61.36825 * 16 15 14 18 18 H 1.09005 * 109.49873 * 58.58606 * 17 16 15 19 19 C 1.50694 * 109.50116 * 178.68490 * 17 16 15 20 20 H 1.08007 * 119.99755 * 359.97438 * 19 17 16 21 21 C 1.37875 * 120.00335 * 180.02562 * 19 17 16 22 22 N 1.31515 * 120.00011 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00058 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47003 * 60.00328 * 23 21 19 25 25 H 1.48504 * 109.47017 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47331 * 299.99914 * 23 21 19 27 27 C 1.46920 * 120.63217 * 180.02562 * 13 11 10 28 28 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46982 * 300.00301 * 1 2 3 30 30 H 1.08994 * 109.46971 * 59.99981 * 1 2 3 31 31 H 1.08994 * 109.47036 * 239.99471 * 2 1 3 32 32 H 1.09000 * 109.46729 * 119.99703 * 2 1 3 33 33 H 1.09004 * 109.47074 * 59.99466 * 3 2 1 34 34 H 1.09010 * 109.47028 * 300.00089 * 3 2 1 35 35 H 1.08989 * 109.47027 * 59.99979 * 4 3 2 36 36 H 1.09000 * 109.46729 * 299.99703 * 4 3 2 37 37 H 1.09000 * 109.46753 * 306.42171 * 7 5 4 38 38 H 1.09005 * 109.46909 * 66.41969 * 7 5 4 39 39 H 1.09001 * 109.47671 * 291.61187 * 8 7 5 40 40 H 1.09005 * 109.46970 * 51.61022 * 8 7 5 41 41 H 1.09000 * 109.47375 * 171.60696 * 8 7 5 42 42 H 1.08997 * 109.47199 * 53.49509 * 9 5 4 43 43 H 1.09002 * 109.47048 * 293.49053 * 9 5 4 44 44 H 1.08999 * 109.58598 * 113.84238 * 14 13 11 45 45 H 1.08999 * 109.70034 * 353.48335 * 14 13 11 46 46 H 1.09004 * 109.50042 * 185.41463 * 15 14 13 47 47 H 1.08999 * 109.52661 * 65.32987 * 15 14 13 48 48 H 1.09003 * 109.46115 * 181.39117 * 16 15 14 49 49 H 1.08997 * 109.45788 * 301.34678 * 16 15 14 50 50 H 0.96992 * 120.00236 * 179.97438 * 22 21 19 51 51 H 1.09003 * 109.58768 * 246.15433 * 27 13 11 52 52 H 1.09005 * 109.58566 * 6.58275 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6451 3.4237 -0.8431 7 6 3.6758 3.5694 1.3060 8 6 4.0439 5.0530 1.2400 9 6 5.6048 2.8867 -0.1276 10 8 6.0760 4.2514 -0.2830 11 6 7.4047 4.4287 -0.4086 12 8 8.1502 3.4693 -0.3885 13 7 7.9079 5.6701 -0.5567 14 6 7.0191 6.8399 -0.5836 15 6 7.3062 7.6481 -1.8528 16 6 8.7969 7.9900 -1.9088 17 6 9.6165 6.6987 -1.9628 18 1 9.3235 6.1182 -2.8377 19 6 11.0825 7.0366 -2.0505 20 1 11.3986 8.0693 -2.0666 21 6 12.0201 6.0276 -2.1113 22 7 11.6352 4.7702 -2.0923 23 14 13.8372 6.4466 -2.2207 24 1 14.2360 7.2355 -1.0274 25 1 14.6319 5.1932 -2.2730 26 1 14.0884 7.2441 -3.4479 27 6 9.3555 5.8795 -0.6955 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 2.6003 3.4680 1.4518 38 1 4.2011 3.1015 2.1387 39 1 5.1287 5.1588 1.2441 40 1 3.6400 5.4871 0.3253 41 1 3.6251 5.5701 2.1033 42 1 5.8979 2.2998 -0.9980 43 1 6.0442 2.4506 0.7695 44 1 7.2040 7.4594 0.2939 45 1 5.9797 6.5116 -0.5867 46 1 6.7223 8.5684 -1.8380 47 1 7.0349 7.0592 -2.7289 48 1 8.9996 8.5863 -2.7985 49 1 9.0727 8.5582 -1.0205 50 1 12.2948 4.0604 -2.1354 51 1 9.7314 6.4207 0.1728 52 1 9.8583 4.9155 -0.7738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193964465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:36 Heat of formation + Delta-G solvation = -126.045598 kcal Electronic energy + Delta-G solvation = -27096.509095 eV Core-core repulsion = 23480.415332 eV Total energy + Delta-G solvation = -3616.093762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02661 -38.15105 -37.07860 -35.56284 -34.22759 -33.31972 -31.77709 -30.76464 -29.76732 -28.32383 -25.25134 -24.99691 -23.84685 -23.00045 -21.80144 -21.35518 -20.46277 -20.14215 -18.79826 -17.39524 -16.60521 -16.17002 -16.07758 -15.75032 -14.89351 -14.50546 -14.29453 -14.20219 -13.83688 -13.74511 -13.58103 -13.31845 -13.14435 -12.76661 -12.59193 -12.45174 -12.37800 -12.19274 -11.94972 -11.84438 -11.47904 -11.39396 -11.29226 -10.97901 -10.91339 -10.90588 -10.75095 -10.62461 -10.51448 -10.45267 -10.38309 -10.22130 -9.94357 -9.87187 -9.65979 -9.11199 -8.99867 -8.43892 -7.79115 -5.99975 -4.09118 2.76949 3.32507 3.38200 3.39503 3.56391 4.28596 4.43025 4.56691 4.67324 4.70201 4.77102 4.94826 5.07337 5.16647 5.29858 5.34313 5.39672 5.43657 5.49134 5.51491 5.55592 5.57920 5.59835 5.60334 5.73315 5.73838 5.78110 5.82297 5.91916 5.94911 6.04752 6.07829 6.10102 6.16942 6.23995 6.29260 6.35158 6.47844 6.57601 6.66250 6.77795 6.90684 6.98116 7.17741 7.27464 7.64942 7.86430 8.00492 8.25007 8.38140 8.93918 9.06336 9.56511 11.05302 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.002714 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.616202 B =10315.065995 C =11053.375338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.088 4.088 6 H 0.081 0.919 7 C -0.117 4.117 8 C -0.154 4.154 9 C 0.092 3.908 10 O -0.369 6.369 11 C 0.636 3.364 12 O -0.571 6.571 13 N -0.587 5.587 14 C 0.114 3.886 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.126 3.874 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.265 0.735 51 H 0.046 0.954 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.566 -3.737 5.631 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.106 4.106 6 H 0.099 0.901 7 C -0.154 4.154 8 C -0.211 4.211 9 C 0.016 3.984 10 O -0.284 6.284 11 C 0.390 3.610 12 O -0.459 6.459 13 N -0.327 5.327 14 C -0.009 4.009 15 C -0.172 4.172 16 C -0.149 4.149 17 C 0.020 3.980 18 H 0.048 0.952 19 C -0.559 4.559 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.007 3.993 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.064 0.936 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.293 -4.286 5.648 21.496 hybrid contribution 1.077 0.101 -0.094 1.086 sum -19.216 -4.185 5.554 20.436 Atomic orbital electron populations 1.21776 0.96014 1.01466 1.01766 1.21545 0.95730 0.97056 1.02061 1.21653 0.94960 0.96669 1.02344 1.21554 0.95654 0.95322 1.02615 1.21312 0.93157 0.96662 0.99491 0.90054 1.21604 1.00760 0.96496 0.96542 1.21907 1.03266 0.95172 1.00715 1.22879 0.93301 0.80164 1.02021 1.86295 1.23739 1.31891 1.86504 1.18251 0.80631 0.84810 0.77317 1.90989 1.58926 1.39559 1.56454 1.47527 1.09645 1.02193 1.73290 1.21600 0.93802 0.87451 0.98079 1.21955 0.98817 0.98872 0.97574 1.21633 0.92625 1.00010 1.00610 1.18985 0.94475 0.90790 0.93713 0.95238 1.21034 0.90370 0.92849 1.51695 0.92286 1.25073 0.99140 0.95075 0.94812 1.69876 1.34130 0.98710 1.49062 0.86632 0.84973 0.77632 0.78615 1.20217 1.21267 1.20265 1.22391 0.73189 1.05229 0.98492 0.92920 0.92821 0.92777 0.92029 0.92063 0.91585 0.91910 0.91521 0.91570 0.91905 0.92229 0.90885 0.92850 0.93721 0.91618 0.91676 0.92225 0.90327 0.92188 0.92183 0.92972 0.93117 0.92539 0.93614 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.88 4.98 -26.73 -0.13 -1.01 16 4 C -0.11 -0.98 4.68 -26.73 -0.13 -1.11 16 5 C -0.09 -0.91 2.21 -90.62 -0.20 -1.11 16 6 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 7 C -0.12 -1.15 5.28 -26.73 -0.14 -1.29 16 8 C -0.15 -1.68 9.01 37.16 0.33 -1.34 16 9 C 0.09 1.29 4.81 37.16 0.18 1.47 16 10 O -0.37 -6.22 5.69 -40.33 -0.23 -6.45 16 11 C 0.64 13.57 8.43 54.05 0.46 14.03 16 12 O -0.57 -14.36 15.54 -19.28 -0.30 -14.66 16 13 N -0.59 -12.30 2.97 -178.59 -0.53 -12.83 16 14 C 0.11 1.89 6.44 -3.71 -0.02 1.87 16 15 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 16 C -0.11 -2.22 5.11 -26.69 -0.14 -2.36 16 17 C 0.04 0.98 2.25 -91.68 -0.21 0.78 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.08 8.56 -34.44 -0.29 -14.38 16 20 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.75 11.40 55.43 0.63 -25.12 16 23 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.13 3.09 5.40 -3.74 -0.02 3.07 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 34 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.53 6.29 -51.93 -0.33 0.20 16 38 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.07 0.97 5.90 -51.93 -0.31 0.66 16 40 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 43 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.16 6.93 -51.93 -0.36 0.80 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 52 H 0.12 3.54 5.13 -51.93 -0.27 3.27 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -30.40 398.47 -9.81 -40.21 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -10.01 Total: 0.39 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.36 Total: -3.77 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.10 Total: -37.95 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.53 Total: -21.11 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.40 -9.81 -40.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.839 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds