Wall clock time and date at job start Fri Apr 10 2020 22:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.53003 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46780 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47298 * 304.99579 * 5 4 3 7 7 C 1.53003 * 109.47341 * 65.00066 * 5 4 3 8 8 C 1.52996 * 109.47025 * 186.41761 * 7 5 4 9 9 C 1.53004 * 109.46624 * 184.99835 * 5 4 3 10 10 O 1.45204 * 109.46902 * 173.49408 * 9 5 4 11 11 C 1.34641 * 116.99960 * 180.02562 * 10 9 5 12 12 O 1.21510 * 119.99633 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00117 * 179.97438 * 11 10 9 14 14 C 1.46935 * 120.62995 * 359.97438 * 13 11 10 15 15 C 1.53188 * 108.77194 * 233.63284 * 14 13 11 16 16 C 1.53044 * 109.31226 * 305.36261 * 15 14 13 17 17 C 1.53037 * 109.54009 * 61.36825 * 16 15 14 18 18 H 1.09005 * 109.49873 * 58.58606 * 17 16 15 19 19 C 1.50694 * 109.50116 * 178.68490 * 17 16 15 20 20 H 1.08007 * 119.99755 * 359.97438 * 19 17 16 21 21 C 1.37875 * 120.00335 * 180.02562 * 19 17 16 22 22 N 1.31515 * 120.00011 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00058 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47003 * 60.00328 * 23 21 19 25 25 H 1.48504 * 109.47017 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47331 * 299.99914 * 23 21 19 27 27 C 1.46920 * 120.63217 * 180.02562 * 13 11 10 28 28 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46982 * 300.00301 * 1 2 3 30 30 H 1.08994 * 109.46971 * 59.99981 * 1 2 3 31 31 H 1.08994 * 109.47036 * 239.99471 * 2 1 3 32 32 H 1.09000 * 109.46729 * 119.99703 * 2 1 3 33 33 H 1.09004 * 109.47074 * 59.99466 * 3 2 1 34 34 H 1.09010 * 109.47028 * 300.00089 * 3 2 1 35 35 H 1.08989 * 109.47027 * 59.99979 * 4 3 2 36 36 H 1.09000 * 109.46729 * 299.99703 * 4 3 2 37 37 H 1.09000 * 109.46753 * 306.42171 * 7 5 4 38 38 H 1.09005 * 109.46909 * 66.41969 * 7 5 4 39 39 H 1.09001 * 109.47671 * 291.61187 * 8 7 5 40 40 H 1.09005 * 109.46970 * 51.61022 * 8 7 5 41 41 H 1.09000 * 109.47375 * 171.60696 * 8 7 5 42 42 H 1.08997 * 109.47199 * 53.49509 * 9 5 4 43 43 H 1.09002 * 109.47048 * 293.49053 * 9 5 4 44 44 H 1.08999 * 109.58598 * 113.84238 * 14 13 11 45 45 H 1.08999 * 109.70034 * 353.48335 * 14 13 11 46 46 H 1.09004 * 109.50042 * 185.41463 * 15 14 13 47 47 H 1.08999 * 109.52661 * 65.32987 * 15 14 13 48 48 H 1.09003 * 109.46115 * 181.39117 * 16 15 14 49 49 H 1.08997 * 109.45788 * 301.34678 * 16 15 14 50 50 H 0.96992 * 120.00236 * 179.97438 * 22 21 19 51 51 H 1.09003 * 109.58768 * 246.15433 * 27 13 11 52 52 H 1.09005 * 109.58566 * 6.58275 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6451 3.4237 -0.8431 7 6 3.6758 3.5694 1.3060 8 6 4.0439 5.0530 1.2400 9 6 5.6048 2.8867 -0.1276 10 8 6.0760 4.2514 -0.2830 11 6 7.4047 4.4287 -0.4086 12 8 8.1502 3.4693 -0.3885 13 7 7.9079 5.6701 -0.5567 14 6 7.0191 6.8399 -0.5836 15 6 7.3062 7.6481 -1.8528 16 6 8.7969 7.9900 -1.9088 17 6 9.6165 6.6987 -1.9628 18 1 9.3235 6.1182 -2.8377 19 6 11.0825 7.0366 -2.0505 20 1 11.3986 8.0693 -2.0666 21 6 12.0201 6.0276 -2.1113 22 7 11.6352 4.7702 -2.0923 23 14 13.8372 6.4466 -2.2207 24 1 14.2360 7.2355 -1.0274 25 1 14.6319 5.1932 -2.2730 26 1 14.0884 7.2441 -3.4479 27 6 9.3555 5.8795 -0.6955 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 2.6003 3.4680 1.4518 38 1 4.2011 3.1015 2.1387 39 1 5.1287 5.1588 1.2441 40 1 3.6400 5.4871 0.3253 41 1 3.6251 5.5701 2.1033 42 1 5.8979 2.2998 -0.9980 43 1 6.0442 2.4506 0.7695 44 1 7.2040 7.4594 0.2939 45 1 5.9797 6.5116 -0.5867 46 1 6.7223 8.5684 -1.8380 47 1 7.0349 7.0592 -2.7289 48 1 8.9996 8.5863 -2.7985 49 1 9.0727 8.5582 -1.0205 50 1 12.2948 4.0604 -2.1354 51 1 9.7314 6.4207 0.1728 52 1 9.8583 4.9155 -0.7738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193964465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:35 Heat of formation + Delta-G solvation = -140.808976 kcal Electronic energy + Delta-G solvation = -27097.149283 eV Core-core repulsion = 23480.415332 eV Total energy + Delta-G solvation = -3616.733951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60889 -39.44821 -38.36880 -36.94997 -35.33844 -34.97363 -33.49803 -31.62540 -31.46446 -29.27399 -27.11348 -26.47177 -25.01595 -23.76601 -23.46562 -22.26248 -21.79802 -21.10060 -20.42138 -19.04263 -18.17395 -18.00101 -17.59060 -16.60423 -16.39648 -15.98893 -15.61101 -15.25544 -15.14672 -14.86724 -14.70540 -14.47676 -14.40222 -14.27389 -13.99212 -13.68812 -13.53744 -13.34773 -13.18996 -12.89086 -12.84665 -12.72267 -12.36365 -12.29029 -12.25810 -12.03209 -11.97669 -11.90267 -11.68183 -11.66114 -11.54776 -11.49594 -11.38341 -11.30885 -11.01709 -10.94649 -10.87685 -10.52708 -9.52755 -8.11202 -6.28540 1.23599 1.42381 1.44461 1.52058 1.86102 2.42185 2.97812 3.18315 3.74403 3.76012 3.90134 4.10773 4.14117 4.16578 4.25851 4.29279 4.33000 4.39307 4.46020 4.55047 4.57886 4.58963 4.73212 4.75638 4.78122 4.81336 4.84651 4.92036 4.96735 4.98189 5.08093 5.09914 5.19981 5.20863 5.23063 5.24347 5.26784 5.28755 5.34541 5.40852 5.44814 5.50368 5.53072 5.56436 5.60658 5.64792 5.87376 5.98260 6.31333 6.55166 6.84179 7.37659 7.42517 8.92347 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.002714 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.616202 B =10315.065995 C =11053.375338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.113 4.113 4 C -0.111 4.111 5 C -0.076 4.076 6 H 0.085 0.915 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.085 3.915 10 O -0.350 6.350 11 C 0.634 3.366 12 O -0.619 6.619 13 N -0.590 5.590 14 C 0.111 3.889 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.038 3.962 18 H -0.014 1.014 19 C -0.534 4.534 20 H 0.066 0.934 21 C 0.008 3.992 22 N -0.917 5.917 23 Si 0.959 3.041 24 H -0.266 1.266 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.139 3.861 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.047 0.953 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.260 0.740 51 H 0.045 0.955 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.704 -2.031 6.334 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.148 4.148 5 C -0.095 4.095 6 H 0.103 0.897 7 C -0.152 4.152 8 C -0.210 4.210 9 C 0.010 3.990 10 O -0.263 6.263 11 C 0.389 3.611 12 O -0.511 6.511 13 N -0.329 5.329 14 C -0.011 4.011 15 C -0.164 4.164 16 C -0.143 4.143 17 C 0.018 3.982 18 H 0.004 0.996 19 C -0.573 4.573 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.555 5.555 23 Si 0.785 3.215 24 H -0.191 1.191 25 H -0.216 1.216 26 H -0.193 1.193 27 C 0.018 3.982 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.481 -2.539 6.352 23.499 hybrid contribution 1.676 -0.459 -0.311 1.766 sum -20.805 -2.998 6.040 21.870 Atomic orbital electron populations 1.21771 0.95366 1.01828 1.02004 1.21546 0.96296 0.96675 1.01964 1.21613 0.93532 0.97136 1.02780 1.21546 0.96776 0.93913 1.02583 1.21308 0.89783 0.98121 1.00238 0.89695 1.21616 1.02139 0.95695 0.95752 1.21886 1.01506 0.96043 1.01559 1.23232 0.95921 0.78679 1.01182 1.86343 1.20686 1.33504 1.85807 1.18419 0.81734 0.84348 0.76649 1.90953 1.60484 1.41206 1.58483 1.47473 1.09007 1.03589 1.72869 1.21933 0.94049 0.86045 0.99046 1.21917 0.96792 1.00661 0.96984 1.21529 0.94261 0.97245 1.01257 1.18927 0.94563 0.92754 0.91911 0.99552 1.21474 0.91796 0.93088 1.50894 0.91609 1.25932 1.03754 0.94848 0.94573 1.70079 1.35254 0.99736 1.50462 0.85586 0.79505 0.77294 0.79152 1.19063 1.21602 1.19280 1.21850 0.75317 1.02732 0.98290 0.92568 0.92410 0.92697 0.92389 0.91993 0.90813 0.91737 0.91953 0.91366 0.89592 0.92502 0.93419 0.92510 0.92362 0.92879 0.92314 0.90066 0.87967 0.87624 0.93373 0.92657 0.92030 0.93078 0.93630 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.13 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.11 -1.43 4.98 30.59 0.15 -1.28 16 4 C -0.11 -1.77 4.68 30.60 0.14 -1.62 16 5 C -0.08 -1.48 2.21 -10.79 -0.02 -1.50 16 6 H 0.08 1.63 8.11 -2.39 -0.02 1.61 16 7 C -0.11 -1.99 5.28 30.59 0.16 -1.83 16 8 C -0.15 -2.98 9.01 71.98 0.65 -2.33 16 9 C 0.08 2.42 4.81 71.98 0.35 2.76 16 10 O -0.35 -11.76 5.69 -55.51 -0.32 -12.08 16 11 C 0.63 27.82 8.43 129.79 1.09 28.92 16 12 O -0.62 -32.91 15.54 19.81 0.31 -32.60 16 13 N -0.59 -24.99 2.97 -949.35 -2.82 -27.81 16 14 C 0.11 3.43 6.44 86.36 0.56 3.99 16 15 C -0.13 -3.85 6.08 30.67 0.19 -3.67 16 16 C -0.11 -4.07 5.11 30.62 0.16 -3.91 16 17 C 0.04 1.92 2.25 -11.48 -0.03 1.89 16 18 H -0.01 -0.81 8.14 -2.38 -0.02 -0.82 16 19 C -0.53 -29.32 8.56 25.60 0.22 -29.10 16 20 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 21 C 0.01 0.47 5.30 84.65 0.45 0.92 16 22 N -0.92 -56.10 11.40 21.45 0.24 -55.85 16 23 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.14 7.05 5.40 86.35 0.47 7.52 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.84 6.44 -2.39 -0.02 0.82 16 34 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.15 6.29 -2.39 -0.02 1.13 16 38 H 0.06 1.04 8.13 -2.38 -0.02 1.02 16 39 H 0.05 1.18 5.90 -2.39 -0.01 1.16 16 40 H 0.06 1.06 8.10 -2.38 -0.02 1.04 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 1.64 8.13 -2.39 -0.02 1.63 16 43 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.10 2.71 6.93 -2.39 -0.02 2.70 16 46 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 51 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 52 H 0.08 4.81 5.13 -2.38 -0.01 4.80 16 Total: -1.00 -69.76 398.47 5.71 -64.04 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.85 Total: 19.57 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.43 Total: -1.52 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.58 Total: -83.66 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.01 Total: -44.68 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.76 5.71 -64.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.765 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds