Wall clock time and date at job start Fri Apr 10 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46970 * 2 1 4 4 C 1.53001 * 109.46970 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46872 * 174.72272 * 4 3 2 6 6 H 1.09003 * 109.47554 * 305.62650 * 5 4 3 7 7 C 1.53006 * 109.47144 * 185.63152 * 5 4 3 8 8 C 1.52998 * 109.47025 * 65.80146 * 7 5 4 9 9 C 1.52998 * 109.47273 * 65.63206 * 5 4 3 10 10 O 1.45200 * 109.47589 * 184.99698 * 9 5 4 11 11 C 1.34639 * 117.00500 * 179.97438 * 10 9 5 12 12 O 1.21512 * 119.99427 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.46921 * 120.63241 * 359.72425 * 13 11 10 15 15 C 1.52762 * 109.00485 * 233.58137 * 14 13 11 16 16 C 1.53041 * 109.38733 * 305.58606 * 15 14 13 17 17 C 1.53044 * 109.53440 * 61.23904 * 16 15 14 18 18 H 1.08999 * 109.49837 * 58.58947 * 17 16 15 19 19 C 1.50698 * 109.49712 * 178.68785 * 17 16 15 20 20 H 1.08003 * 119.99935 * 359.83656 * 19 17 16 21 21 C 1.37876 * 120.00316 * 179.84058 * 19 17 16 22 22 N 1.31517 * 119.99699 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99988 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47480 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46829 * 120.00245 * 23 21 19 26 26 H 1.48500 * 109.46807 * 239.99518 * 23 21 19 27 27 C 1.46925 * 120.62842 * 179.97438 * 13 11 10 28 28 H 1.08998 * 109.47387 * 59.99792 * 1 2 3 29 29 H 1.08995 * 109.46908 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47215 * 300.00380 * 1 2 3 31 31 H 1.08998 * 109.47081 * 240.00346 * 2 1 3 32 32 H 1.08998 * 109.47407 * 119.99651 * 2 1 3 33 33 H 1.08999 * 109.47478 * 299.99809 * 3 2 1 34 34 H 1.09003 * 109.47462 * 59.99770 * 3 2 1 35 35 H 1.09000 * 109.47327 * 294.72376 * 4 3 2 36 36 H 1.08997 * 109.47174 * 54.72548 * 4 3 2 37 37 H 1.08997 * 109.47127 * 185.80256 * 7 5 4 38 38 H 1.08997 * 109.46816 * 305.80092 * 7 5 4 39 39 H 1.09007 * 109.46856 * 294.67184 * 8 7 5 40 40 H 1.08998 * 109.47183 * 54.67243 * 8 7 5 41 41 H 1.08999 * 109.46803 * 174.67601 * 8 7 5 42 42 H 1.09003 * 109.47034 * 304.99763 * 9 5 4 43 43 H 1.08998 * 109.47251 * 64.99799 * 9 5 4 44 44 H 1.09000 * 109.58884 * 353.41045 * 14 13 11 45 45 H 1.09004 * 109.59269 * 113.84436 * 14 13 11 46 46 H 1.09007 * 109.56364 * 185.55353 * 15 14 13 47 47 H 1.08994 * 109.39112 * 65.51830 * 15 14 13 48 48 H 1.09006 * 109.45670 * 301.22072 * 16 15 14 49 49 H 1.08990 * 109.46395 * 181.26326 * 16 15 14 50 50 H 0.97001 * 120.00174 * 179.97438 * 22 21 19 51 51 H 1.08997 * 109.58987 * 246.15834 * 27 13 11 52 52 H 1.09002 * 109.58468 * 6.58364 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8789 -0.1333 6 1 3.6362 3.3421 -1.0147 7 6 5.6033 2.8683 -0.2751 8 6 5.9879 2.1972 -1.5952 9 6 3.6892 3.6760 1.1129 10 8 4.0684 5.0665 0.9367 11 6 3.7919 5.9086 1.9502 12 8 3.2490 5.4928 2.9547 13 7 4.1173 7.2127 1.8506 14 6 4.7793 7.7290 0.6449 15 6 6.0527 8.4671 1.0541 16 6 5.7078 9.5393 2.0902 17 6 5.1110 8.8761 3.3337 18 1 5.8258 8.1628 3.7441 19 6 4.8015 9.9295 4.3660 20 1 5.0119 10.9681 4.1576 21 6 4.2498 9.5674 5.5766 22 7 3.9932 8.3027 5.8302 23 14 3.8669 10.8731 6.8564 24 1 4.2459 12.2088 6.3297 25 1 2.4136 10.8560 7.1613 26 1 4.6359 10.5924 8.0953 27 6 3.8215 8.1439 2.9479 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9337 1.0126 0.9326 36 1 3.9330 0.8492 -0.8398 37 1 5.9762 3.8925 -0.2661 38 1 6.0416 2.3147 0.5552 39 1 5.6987 1.1466 -1.5664 40 1 5.4737 2.6932 -2.4183 41 1 7.0654 2.2735 -1.7411 42 1 2.6118 3.6095 1.2637 43 1 4.2038 3.2665 1.9821 44 1 5.0352 6.9001 -0.0149 45 1 4.1114 8.4178 0.1277 46 1 6.4992 8.9380 0.1782 47 1 6.7591 7.7581 1.4857 48 1 4.9830 10.2343 1.6660 49 1 6.6119 10.0817 2.3664 50 1 3.6054 8.0478 6.6820 51 1 3.0739 8.8671 2.6220 52 1 3.4454 7.5885 3.8071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193964468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:39 Heat of formation + Delta-G solvation = -128.595554 kcal Electronic energy + Delta-G solvation = -27019.248586 eV Core-core repulsion = 23403.044249 eV Total energy + Delta-G solvation = -3616.204337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.99260 -38.16467 -37.07479 -35.46852 -34.43331 -33.32919 -31.79585 -30.73556 -29.77512 -28.24926 -25.23625 -24.95821 -23.93297 -23.17201 -21.79766 -21.22142 -20.54247 -20.04482 -18.84350 -17.37905 -16.58769 -16.20089 -15.92645 -15.54851 -14.95334 -14.65472 -14.42623 -14.16597 -13.83104 -13.69816 -13.53252 -13.33961 -13.15616 -12.97834 -12.59164 -12.46468 -12.36320 -12.22385 -11.93917 -11.76355 -11.65648 -11.48429 -11.25495 -11.00699 -10.91790 -10.88383 -10.76916 -10.53343 -10.45383 -10.42554 -10.37847 -10.23090 -10.01997 -9.89227 -9.70698 -9.11898 -8.98404 -8.44623 -7.79505 -6.00290 -4.09277 2.78011 3.30465 3.38630 3.41704 3.55875 4.37012 4.43829 4.46222 4.63277 4.74072 4.90145 4.97144 5.00392 5.17370 5.29711 5.32996 5.35223 5.46437 5.47186 5.50343 5.54486 5.57631 5.58612 5.62098 5.71595 5.74658 5.78181 5.83845 5.87166 5.97864 6.00309 6.07313 6.08997 6.17276 6.21027 6.25920 6.29652 6.35115 6.57266 6.66238 6.77549 6.90299 6.97917 7.17356 7.27240 7.64989 7.86182 8.00254 8.24429 8.37952 8.94181 9.05826 9.56493 11.04951 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.003023 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.365916 B = 9260.332285 C =10467.158455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.085 4.085 6 H 0.080 0.920 7 C -0.121 4.121 8 C -0.151 4.151 9 C 0.090 3.910 10 O -0.377 6.377 11 C 0.639 3.361 12 O -0.570 6.570 13 N -0.587 5.587 14 C 0.115 3.885 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.039 3.961 18 H 0.030 0.970 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.880 5.880 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.126 3.874 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.263 0.737 51 H 0.046 0.954 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -13.535 -15.758 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.150 4.150 5 C -0.104 4.104 6 H 0.098 0.902 7 C -0.158 4.158 8 C -0.208 4.208 9 C 0.015 3.985 10 O -0.292 6.292 11 C 0.393 3.607 12 O -0.458 6.458 13 N -0.327 5.327 14 C -0.008 4.008 15 C -0.172 4.172 16 C -0.149 4.149 17 C 0.020 3.980 18 H 0.048 0.952 19 C -0.558 4.558 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.517 5.517 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.064 0.936 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.647 -13.847 -15.311 20.654 hybrid contribution -0.276 0.644 0.838 1.092 sum -0.923 -13.203 -14.473 19.613 Atomic orbital electron populations 1.21787 0.95986 1.01418 1.01976 1.21524 0.95836 0.96939 1.01828 1.21748 0.95369 0.96823 1.02559 1.21638 0.95443 0.95293 1.02657 1.21275 0.96628 0.94890 0.97602 0.90164 1.21562 0.94645 1.01853 0.97776 1.21809 1.01053 1.00458 0.97493 1.22948 1.00340 0.77059 0.98194 1.86163 1.78460 1.20551 1.44014 1.18172 0.78764 0.82457 0.81329 1.90989 1.47555 1.76435 1.30861 1.47530 1.60429 1.04566 1.20138 1.21491 0.94177 0.98291 0.86860 1.21884 0.96848 0.99068 0.99447 1.21634 1.00166 0.96631 0.96453 1.19016 0.92702 0.94959 0.91365 0.95217 1.21111 1.42289 0.93396 0.99023 0.92173 1.25077 0.95413 0.95340 0.98296 1.69900 1.42775 1.15239 1.23824 0.86522 0.78021 0.81870 0.81516 1.19767 1.20958 1.21009 1.22413 0.99516 0.90007 0.87362 0.92810 0.92953 0.92595 0.92216 0.92053 0.91841 0.91531 0.91601 0.90900 0.90987 0.91996 0.92794 0.92766 0.92876 0.91417 0.91599 0.90452 0.92200 0.92126 0.92203 0.93100 0.92948 0.92665 0.93583 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.13 -1.12 4.86 -26.73 -0.13 -1.25 16 4 C -0.11 -0.98 4.56 -26.73 -0.12 -1.10 16 5 C -0.09 -0.90 2.08 -90.62 -0.19 -1.09 16 6 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.12 -1.24 5.35 -26.73 -0.14 -1.38 16 8 C -0.15 -1.25 9.56 37.16 0.36 -0.89 16 9 C 0.09 1.29 4.72 37.16 0.18 1.47 16 10 O -0.38 -6.58 8.31 -40.32 -0.33 -6.92 16 11 C 0.64 13.87 8.43 54.05 0.46 14.32 16 12 O -0.57 -14.43 15.54 -19.28 -0.30 -14.73 16 13 N -0.59 -12.46 2.98 -178.80 -0.53 -12.99 16 14 C 0.12 1.94 6.42 -3.93 -0.03 1.92 16 15 C -0.13 -2.24 6.06 -26.83 -0.16 -2.41 16 16 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 17 C 0.04 0.96 2.25 -91.63 -0.21 0.76 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.05 8.56 -34.44 -0.29 -14.34 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -25.70 11.39 55.43 0.63 -25.07 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.13 3.10 5.41 -3.69 -0.02 3.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.67 6.74 -51.93 -0.35 0.32 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 6.46 -51.93 -0.34 0.21 16 37 H 0.07 0.85 7.67 -51.93 -0.40 0.45 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.39 6.73 -51.93 -0.35 0.04 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.99 6.48 -51.93 -0.34 0.65 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.17 6.93 -51.93 -0.36 0.81 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.12 3.55 5.12 -51.93 -0.27 3.29 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -30.59 400.48 -9.82 -40.41 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -9.97 Total: 0.67 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.33 Total: -3.61 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.10 Total: -38.06 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.63 Total: -21.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.59 -9.82 -40.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.190 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds