Wall clock time and date at job start Fri Apr 10 2020 22:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46970 * 2 1 4 4 C 1.53001 * 109.46970 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46872 * 174.72272 * 4 3 2 6 6 H 1.09003 * 109.47554 * 305.62650 * 5 4 3 7 7 C 1.53006 * 109.47144 * 185.63152 * 5 4 3 8 8 C 1.52998 * 109.47025 * 65.80146 * 7 5 4 9 9 C 1.52998 * 109.47273 * 65.63206 * 5 4 3 10 10 O 1.45200 * 109.47589 * 184.99698 * 9 5 4 11 11 C 1.34639 * 117.00500 * 179.97438 * 10 9 5 12 12 O 1.21512 * 119.99427 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.46921 * 120.63241 * 359.72425 * 13 11 10 15 15 C 1.52762 * 109.00485 * 233.58137 * 14 13 11 16 16 C 1.53041 * 109.38733 * 305.58606 * 15 14 13 17 17 C 1.53044 * 109.53440 * 61.23904 * 16 15 14 18 18 H 1.08999 * 109.49837 * 58.58947 * 17 16 15 19 19 C 1.50698 * 109.49712 * 178.68785 * 17 16 15 20 20 H 1.08003 * 119.99935 * 359.83656 * 19 17 16 21 21 C 1.37876 * 120.00316 * 179.84058 * 19 17 16 22 22 N 1.31517 * 119.99699 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99988 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47480 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46829 * 120.00245 * 23 21 19 26 26 H 1.48500 * 109.46807 * 239.99518 * 23 21 19 27 27 C 1.46925 * 120.62842 * 179.97438 * 13 11 10 28 28 H 1.08998 * 109.47387 * 59.99792 * 1 2 3 29 29 H 1.08995 * 109.46908 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47215 * 300.00380 * 1 2 3 31 31 H 1.08998 * 109.47081 * 240.00346 * 2 1 3 32 32 H 1.08998 * 109.47407 * 119.99651 * 2 1 3 33 33 H 1.08999 * 109.47478 * 299.99809 * 3 2 1 34 34 H 1.09003 * 109.47462 * 59.99770 * 3 2 1 35 35 H 1.09000 * 109.47327 * 294.72376 * 4 3 2 36 36 H 1.08997 * 109.47174 * 54.72548 * 4 3 2 37 37 H 1.08997 * 109.47127 * 185.80256 * 7 5 4 38 38 H 1.08997 * 109.46816 * 305.80092 * 7 5 4 39 39 H 1.09007 * 109.46856 * 294.67184 * 8 7 5 40 40 H 1.08998 * 109.47183 * 54.67243 * 8 7 5 41 41 H 1.08999 * 109.46803 * 174.67601 * 8 7 5 42 42 H 1.09003 * 109.47034 * 304.99763 * 9 5 4 43 43 H 1.08998 * 109.47251 * 64.99799 * 9 5 4 44 44 H 1.09000 * 109.58884 * 353.41045 * 14 13 11 45 45 H 1.09004 * 109.59269 * 113.84436 * 14 13 11 46 46 H 1.09007 * 109.56364 * 185.55353 * 15 14 13 47 47 H 1.08994 * 109.39112 * 65.51830 * 15 14 13 48 48 H 1.09006 * 109.45670 * 301.22072 * 16 15 14 49 49 H 1.08990 * 109.46395 * 181.26326 * 16 15 14 50 50 H 0.97001 * 120.00174 * 179.97438 * 22 21 19 51 51 H 1.08997 * 109.58987 * 246.15834 * 27 13 11 52 52 H 1.09002 * 109.58468 * 6.58364 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8789 -0.1333 6 1 3.6362 3.3421 -1.0147 7 6 5.6033 2.8683 -0.2751 8 6 5.9879 2.1972 -1.5952 9 6 3.6892 3.6760 1.1129 10 8 4.0684 5.0665 0.9367 11 6 3.7919 5.9086 1.9502 12 8 3.2490 5.4928 2.9547 13 7 4.1173 7.2127 1.8506 14 6 4.7793 7.7290 0.6449 15 6 6.0527 8.4671 1.0541 16 6 5.7078 9.5393 2.0902 17 6 5.1110 8.8761 3.3337 18 1 5.8258 8.1628 3.7441 19 6 4.8015 9.9295 4.3660 20 1 5.0119 10.9681 4.1576 21 6 4.2498 9.5674 5.5766 22 7 3.9932 8.3027 5.8302 23 14 3.8669 10.8731 6.8564 24 1 4.2459 12.2088 6.3297 25 1 2.4136 10.8560 7.1613 26 1 4.6359 10.5924 8.0953 27 6 3.8215 8.1439 2.9479 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9337 1.0126 0.9326 36 1 3.9330 0.8492 -0.8398 37 1 5.9762 3.8925 -0.2661 38 1 6.0416 2.3147 0.5552 39 1 5.6987 1.1466 -1.5664 40 1 5.4737 2.6932 -2.4183 41 1 7.0654 2.2735 -1.7411 42 1 2.6118 3.6095 1.2637 43 1 4.2038 3.2665 1.9821 44 1 5.0352 6.9001 -0.0149 45 1 4.1114 8.4178 0.1277 46 1 6.4992 8.9380 0.1782 47 1 6.7591 7.7581 1.4857 48 1 4.9830 10.2343 1.6660 49 1 6.6119 10.0817 2.3664 50 1 3.6054 8.0478 6.6820 51 1 3.0739 8.8671 2.6220 52 1 3.4454 7.5885 3.8071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193964468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:38 Heat of formation + Delta-G solvation = -143.657457 kcal Electronic energy + Delta-G solvation = -27019.901719 eV Core-core repulsion = 23403.044249 eV Total energy + Delta-G solvation = -3616.857470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61058 -39.46635 -38.39382 -36.95202 -35.36280 -35.14846 -33.52481 -31.62313 -31.45362 -29.22358 -27.12386 -26.42830 -25.11342 -23.92251 -23.48757 -22.21737 -21.88248 -20.96384 -20.52336 -19.06097 -18.20940 -18.02747 -17.47848 -16.60441 -16.36574 -15.85300 -15.63008 -15.36555 -15.25377 -15.14734 -14.75950 -14.46004 -14.36936 -14.07086 -13.93896 -13.82577 -13.73247 -13.52034 -13.15085 -12.91129 -12.79037 -12.65957 -12.36781 -12.31387 -12.25082 -12.20728 -11.97135 -11.89831 -11.73121 -11.66804 -11.64610 -11.48635 -11.45349 -11.19105 -11.08677 -11.01402 -10.88313 -10.54458 -9.54808 -8.11588 -6.28793 1.21471 1.41615 1.42566 1.54586 1.82787 2.41924 2.98184 3.18156 3.65906 3.72155 3.92554 4.08572 4.14633 4.15564 4.17345 4.26796 4.29349 4.37710 4.45525 4.50893 4.57723 4.60450 4.70585 4.73550 4.77959 4.79615 4.82048 4.84071 4.88648 5.03975 5.07663 5.09767 5.12618 5.15643 5.17701 5.23577 5.26140 5.27218 5.33011 5.37571 5.42882 5.45098 5.51298 5.53930 5.56487 5.60425 5.86635 5.97535 6.30890 6.52128 6.84173 7.34760 7.42062 8.92240 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.003023 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.365916 B = 9260.332285 C =10467.158455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.128 4.128 4 C -0.106 4.106 5 C -0.074 4.074 6 H 0.088 0.912 7 C -0.121 4.121 8 C -0.146 4.146 9 C 0.083 3.917 10 O -0.361 6.361 11 C 0.636 3.364 12 O -0.616 6.616 13 N -0.590 5.590 14 C 0.111 3.889 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.037 3.963 18 H -0.013 1.013 19 C -0.532 4.532 20 H 0.066 0.934 21 C 0.008 3.992 22 N -0.916 5.916 23 Si 0.960 3.040 24 H -0.259 1.259 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.139 3.861 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.260 0.740 51 H 0.047 0.953 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -13.373 -18.511 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.165 4.165 4 C -0.144 4.144 5 C -0.092 4.092 6 H 0.107 0.893 7 C -0.159 4.159 8 C -0.203 4.203 9 C 0.009 3.991 10 O -0.275 6.275 11 C 0.391 3.609 12 O -0.509 6.509 13 N -0.330 5.330 14 C -0.011 4.011 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.018 3.982 18 H 0.005 0.995 19 C -0.571 4.571 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.555 5.555 23 Si 0.785 3.215 24 H -0.183 1.183 25 H -0.209 1.209 26 H -0.210 1.210 27 C 0.018 3.982 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.003 -13.677 -18.120 22.703 hybrid contribution -0.459 0.542 1.671 1.816 sum -0.456 -13.135 -16.449 21.055 Atomic orbital electron populations 1.21804 0.96036 1.01922 1.01585 1.21513 0.95816 0.96147 1.02439 1.21737 0.95480 0.97521 1.01768 1.21627 0.95258 0.93991 1.03490 1.21288 0.97140 0.95304 0.95500 0.89349 1.21555 0.94052 1.01108 0.99165 1.21769 1.01446 1.01004 0.96049 1.23305 1.00039 0.75647 1.00117 1.86180 1.77893 1.21545 1.41920 1.18335 0.78183 0.82994 0.81412 1.90955 1.49589 1.77399 1.32914 1.47499 1.60523 1.04198 1.20742 1.21839 0.94353 0.99599 0.85285 1.21843 0.96613 0.97875 1.00006 1.21531 1.00175 0.97494 0.95109 1.18957 0.91987 0.93952 0.93335 0.99506 1.21528 1.41648 0.94118 0.99774 0.91592 1.25928 0.95381 0.97183 1.00603 1.70096 1.43891 1.17414 1.24096 0.85477 0.77593 0.79713 0.78715 1.18286 1.20859 1.20960 1.21884 0.99225 0.89871 0.87204 0.92507 0.92018 0.93715 0.90760 0.92228 0.91403 0.93593 0.91899 0.88599 0.92716 0.92362 0.91451 0.92192 0.92447 0.91943 0.93001 0.88144 0.89923 0.87514 0.93410 0.91985 0.92594 0.93102 0.93519 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.12 -1.71 5.93 30.60 0.18 -1.53 16 3 C -0.13 -2.12 4.86 30.60 0.15 -1.97 16 4 C -0.11 -1.67 4.56 30.59 0.14 -1.53 16 5 C -0.07 -1.46 2.08 -10.79 -0.02 -1.49 16 6 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 7 C -0.12 -2.31 5.35 30.60 0.16 -2.15 16 8 C -0.15 -2.00 9.56 71.98 0.69 -1.31 16 9 C 0.08 2.44 4.72 71.98 0.34 2.78 16 10 O -0.36 -12.65 8.31 -55.48 -0.46 -13.11 16 11 C 0.64 28.41 8.43 129.79 1.09 29.51 16 12 O -0.62 -33.01 15.54 19.80 0.31 -32.70 16 13 N -0.59 -25.29 2.98 -950.02 -2.83 -28.12 16 14 C 0.11 3.47 6.42 86.22 0.55 4.03 16 15 C -0.13 -3.87 6.06 30.53 0.19 -3.68 16 16 C -0.11 -4.08 5.11 30.62 0.16 -3.92 16 17 C 0.04 1.88 2.25 -11.45 -0.03 1.86 16 18 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 19 C -0.53 -29.21 8.56 25.60 0.22 -28.99 16 20 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 21 C 0.01 0.47 5.30 84.65 0.45 0.92 16 22 N -0.92 -55.98 11.39 21.45 0.24 -55.73 16 23 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 C 0.14 7.07 5.41 86.38 0.47 7.53 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 0.95 6.74 -2.39 -0.02 0.93 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.13 6.46 -2.39 -0.02 1.11 16 37 H 0.05 1.23 7.67 -2.39 -0.02 1.21 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.75 6.73 -2.38 -0.02 0.74 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 1.90 6.48 -2.39 -0.02 1.88 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.10 2.72 6.93 -2.39 -0.02 2.71 16 45 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 46 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 49 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 51 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 52 H 0.08 4.83 5.12 -2.39 -0.01 4.82 16 Total: -1.00 -70.25 400.48 5.59 -64.66 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.85 Total: 20.20 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.45 Total: -1.46 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -2.58 Total: -83.85 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.15 Total: -45.82 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.25 5.59 -64.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.995 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds