Wall clock time and date at job start Fri Apr 10 2020 22:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47633 * 2 1 4 4 C 1.53002 * 109.47379 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47014 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47295 * 305.00545 * 5 4 3 7 7 C 1.53004 * 109.47115 * 64.99954 * 5 4 3 8 8 C 1.52997 * 109.47102 * 186.41655 * 7 5 4 9 9 C 1.52999 * 109.47177 * 184.99964 * 5 4 3 10 10 O 1.45193 * 109.47095 * 173.48125 * 9 5 4 11 11 C 1.34646 * 117.00010 * 180.02562 * 10 9 5 12 12 O 1.21508 * 119.99777 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00255 * 180.02562 * 11 10 9 14 14 C 1.46930 * 120.63113 * 359.97438 * 13 11 10 15 15 C 1.53197 * 108.77729 * 126.36840 * 14 13 11 16 16 C 1.53041 * 109.30912 * 54.63792 * 15 14 13 17 17 C 1.53042 * 109.53550 * 298.63457 * 16 15 14 18 18 H 1.09000 * 109.50123 * 301.37900 * 17 16 15 19 19 C 1.50703 * 109.49502 * 181.32133 * 17 16 15 20 20 H 1.08004 * 120.00022 * 359.97438 * 19 17 16 21 21 C 1.37874 * 119.99958 * 180.02562 * 19 17 16 22 22 N 1.31521 * 120.00182 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00065 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47201 * 59.98985 * 23 21 19 25 25 H 1.48494 * 109.47296 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46767 * 299.99256 * 23 21 19 27 27 C 1.46919 * 120.63247 * 179.71713 * 13 11 10 28 28 H 1.08992 * 109.47161 * 300.00831 * 1 2 3 29 29 H 1.09007 * 109.46228 * 60.00085 * 1 2 3 30 30 H 1.08997 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47325 * 239.99135 * 2 1 3 32 32 H 1.09008 * 109.46969 * 119.99947 * 2 1 3 33 33 H 1.08999 * 109.46769 * 299.99961 * 3 2 1 34 34 H 1.09001 * 109.47471 * 59.99225 * 3 2 1 35 35 H 1.08998 * 109.46622 * 299.99841 * 4 3 2 36 36 H 1.09003 * 109.47059 * 59.99871 * 4 3 2 37 37 H 1.09000 * 109.47299 * 306.41851 * 7 5 4 38 38 H 1.09007 * 109.47060 * 66.41441 * 7 5 4 39 39 H 1.09003 * 109.47155 * 171.60089 * 8 7 5 40 40 H 1.09003 * 109.47155 * 291.59515 * 8 7 5 41 41 H 1.08994 * 109.47514 * 51.59503 * 8 7 5 42 42 H 1.08995 * 109.47065 * 293.48382 * 9 5 4 43 43 H 1.08996 * 109.46899 * 53.48121 * 9 5 4 44 44 H 1.08999 * 109.59160 * 246.16210 * 14 13 11 45 45 H 1.09007 * 109.58490 * 6.44258 * 14 13 11 46 46 H 1.08999 * 109.49534 * 174.59150 * 15 14 13 47 47 H 1.08996 * 109.49787 * 294.68499 * 15 14 13 48 48 H 1.09000 * 109.45860 * 58.65508 * 16 15 14 49 49 H 1.08998 * 109.45829 * 178.62858 * 16 15 14 50 50 H 0.96999 * 119.99650 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.58831 * 353.41609 * 27 13 11 52 52 H 1.08999 * 109.58837 * 113.84396 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5702 1.4424 0.0006 5 6 4.0802 2.8849 0.0000 6 1 3.6459 3.4235 -0.8423 7 6 3.6749 3.5697 1.3068 8 6 4.0431 5.0532 1.2407 9 6 5.6051 2.8866 -0.1251 10 8 6.0763 4.2510 -0.2808 11 6 7.4052 4.4283 -0.4054 12 8 8.1507 3.4690 -0.3841 13 7 7.9087 5.6698 -0.5526 14 6 7.0200 6.8396 -0.5797 15 6 7.4983 7.8465 0.4712 16 6 8.9734 8.1719 0.2258 17 6 9.8085 6.8968 0.3633 18 1 9.6701 6.4768 1.3595 19 6 11.2645 7.2242 0.1535 20 1 11.5647 8.2400 -0.0573 21 6 12.2133 6.2267 0.2296 22 7 11.8477 4.9896 0.4858 23 14 14.0180 6.6323 -0.0311 24 1 14.4550 7.6217 0.9864 25 1 14.8278 5.3948 0.1025 26 1 14.2058 7.2030 -1.3891 27 6 9.3569 5.8796 -0.6836 28 1 -0.3633 0.5139 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 3.9330 0.9287 0.8909 36 1 3.9338 0.9284 -0.8891 37 1 2.5993 3.4684 1.4517 38 1 4.1993 3.1019 2.1401 39 1 3.6235 5.5706 2.1034 40 1 5.1280 5.1589 1.2461 41 1 3.6404 5.4872 0.3255 42 1 6.0437 2.4508 0.7725 43 1 5.8989 2.2992 -0.9949 44 1 7.0513 7.2996 -1.5673 45 1 6.0000 6.5289 -0.3535 46 1 6.9069 8.7590 0.3962 47 1 7.3810 7.4172 1.4662 48 1 9.0934 8.5782 -0.7785 49 1 9.3097 8.9067 0.9573 50 1 12.5153 4.2879 0.5397 51 1 9.8788 4.9362 -0.5235 52 1 9.5824 6.2599 -1.6799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193964470.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:42 Heat of formation + Delta-G solvation = -126.018148 kcal Electronic energy + Delta-G solvation = -27150.466350 eV Core-core repulsion = 23534.373777 eV Total energy + Delta-G solvation = -3616.092572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.03018 -38.14721 -37.08690 -35.56649 -34.22112 -33.32615 -31.77289 -30.75354 -29.77724 -28.32177 -25.25078 -24.99735 -23.84510 -22.98250 -21.80161 -21.35877 -20.46628 -20.13757 -18.80553 -17.35243 -16.60153 -16.31172 -15.99206 -15.74844 -14.78977 -14.57470 -14.27415 -14.21040 -13.82701 -13.75535 -13.63641 -13.35605 -12.97186 -12.74724 -12.64567 -12.57678 -12.30712 -12.17503 -11.97394 -11.78410 -11.48272 -11.39296 -11.29554 -10.98072 -10.91521 -10.88822 -10.74661 -10.61119 -10.53003 -10.44747 -10.34467 -10.22982 -9.93302 -9.88811 -9.65439 -9.11081 -8.99842 -8.43837 -7.79245 -6.00061 -4.09239 2.76943 3.32466 3.38175 3.39474 3.56375 4.28577 4.42949 4.57005 4.67470 4.70162 4.77377 4.95017 5.08410 5.16766 5.29785 5.35045 5.40227 5.44712 5.49006 5.52330 5.56651 5.57223 5.59787 5.60770 5.73699 5.74176 5.78246 5.82771 5.91753 5.95550 6.07927 6.08488 6.10918 6.16960 6.24466 6.30696 6.34830 6.52173 6.58461 6.66277 6.78083 6.90626 6.98209 7.17698 7.27908 7.65108 7.86673 8.00633 8.25091 8.38103 8.93807 9.06349 9.56429 11.05142 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.002727 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.523325 B =10266.806537 C =11066.653684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.087 4.087 6 H 0.080 0.920 7 C -0.117 4.117 8 C -0.154 4.154 9 C 0.091 3.909 10 O -0.369 6.369 11 C 0.636 3.364 12 O -0.571 6.571 13 N -0.587 5.587 14 C 0.113 3.887 15 C -0.133 4.133 16 C -0.111 4.111 17 C 0.039 3.961 18 H 0.029 0.971 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.126 3.874 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.265 0.735 51 H 0.124 0.876 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.101 -4.294 -0.891 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.106 4.106 6 H 0.099 0.901 7 C -0.154 4.154 8 C -0.211 4.211 9 C 0.016 3.984 10 O -0.284 6.284 11 C 0.390 3.610 12 O -0.459 6.459 13 N -0.326 5.326 14 C -0.010 4.010 15 C -0.172 4.172 16 C -0.149 4.149 17 C 0.020 3.980 18 H 0.047 0.953 19 C -0.559 4.559 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.142 0.858 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.826 -4.843 -0.860 21.399 hybrid contribution 1.074 0.097 -0.151 1.089 sum -19.753 -4.746 -1.011 20.340 Atomic orbital electron populations 1.21776 0.96014 1.01464 1.01767 1.21548 0.95729 0.97058 1.02057 1.21652 0.94963 0.96661 1.02348 1.21556 0.95649 0.95335 1.02605 1.21308 0.93122 0.96632 0.99510 0.90131 1.21608 1.00734 0.96548 0.96554 1.21913 1.03388 0.95119 1.00672 1.22877 0.93328 0.80133 1.02038 1.86295 1.23719 1.31911 1.86509 1.18252 0.80620 0.84843 0.77290 1.90989 1.58873 1.39633 1.56429 1.47524 1.09564 1.02101 1.73460 1.21618 0.93504 0.86852 0.99050 1.21951 0.98504 0.97805 0.98916 1.21632 0.92767 1.00051 1.00423 1.18927 0.93820 0.89945 0.95303 0.95258 1.21033 0.90555 0.94577 1.49765 0.92281 1.25075 0.99118 0.95111 0.94803 1.69878 1.34010 1.00168 1.47731 0.86630 0.84859 0.77636 0.78718 1.20268 1.21267 1.20215 1.22319 0.73045 1.05247 0.98711 0.92790 0.92808 0.92920 0.92067 0.92033 0.91945 0.91550 0.91515 0.91591 0.91924 0.92146 0.93654 0.90759 0.92943 0.91550 0.91748 0.92243 0.90280 0.92182 0.92176 0.93122 0.92966 0.92539 0.85767 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.88 4.98 -26.73 -0.13 -1.01 16 4 C -0.11 -0.98 4.68 -26.73 -0.13 -1.10 16 5 C -0.09 -0.91 2.20 -90.62 -0.20 -1.11 16 6 H 0.08 0.84 8.11 -51.93 -0.42 0.41 16 7 C -0.12 -1.19 5.28 -26.73 -0.14 -1.33 16 8 C -0.15 -1.76 9.01 37.16 0.33 -1.42 16 9 C 0.09 1.29 4.81 37.16 0.18 1.47 16 10 O -0.37 -6.22 5.70 -40.34 -0.23 -6.45 16 11 C 0.64 13.58 8.43 54.05 0.46 14.03 16 12 O -0.57 -14.36 15.55 -19.28 -0.30 -14.66 16 13 N -0.59 -12.30 2.98 -178.80 -0.53 -12.83 16 14 C 0.11 1.88 6.45 -3.71 -0.02 1.86 16 15 C -0.13 -2.21 6.08 -26.61 -0.16 -2.38 16 16 C -0.11 -2.22 5.11 -26.69 -0.14 -2.35 16 17 C 0.04 0.97 2.24 -91.85 -0.21 0.77 16 18 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.52 -14.07 8.56 -34.44 -0.29 -14.36 16 20 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.74 11.39 55.43 0.63 -25.10 16 23 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 C 0.13 3.08 5.38 -3.92 -0.02 3.06 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.54 6.29 -51.93 -0.33 0.22 16 38 H 0.06 0.64 8.13 -51.92 -0.42 0.22 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.04 5.46 -51.93 -0.28 0.76 16 41 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 43 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.17 6.49 -51.93 -0.34 0.83 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.12 3.55 5.11 -51.93 -0.27 3.28 16 52 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -30.36 397.55 -9.78 -40.14 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -9.96 Total: 0.56 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.36 Total: -3.86 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.10 Total: -37.94 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.53 Total: -21.11 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.36 -9.78 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964470.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.873 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds