Wall clock time and date at job start Fri Apr 10 2020 22:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47633 * 2 1 4 4 C 1.53002 * 109.47379 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47014 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47295 * 305.00545 * 5 4 3 7 7 C 1.53004 * 109.47115 * 64.99954 * 5 4 3 8 8 C 1.52997 * 109.47102 * 186.41655 * 7 5 4 9 9 C 1.52999 * 109.47177 * 184.99964 * 5 4 3 10 10 O 1.45193 * 109.47095 * 173.48125 * 9 5 4 11 11 C 1.34646 * 117.00010 * 180.02562 * 10 9 5 12 12 O 1.21508 * 119.99777 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00255 * 180.02562 * 11 10 9 14 14 C 1.46930 * 120.63113 * 359.97438 * 13 11 10 15 15 C 1.53197 * 108.77729 * 126.36840 * 14 13 11 16 16 C 1.53041 * 109.30912 * 54.63792 * 15 14 13 17 17 C 1.53042 * 109.53550 * 298.63457 * 16 15 14 18 18 H 1.09000 * 109.50123 * 301.37900 * 17 16 15 19 19 C 1.50703 * 109.49502 * 181.32133 * 17 16 15 20 20 H 1.08004 * 120.00022 * 359.97438 * 19 17 16 21 21 C 1.37874 * 119.99958 * 180.02562 * 19 17 16 22 22 N 1.31521 * 120.00182 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00065 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47201 * 59.98985 * 23 21 19 25 25 H 1.48494 * 109.47296 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46767 * 299.99256 * 23 21 19 27 27 C 1.46919 * 120.63247 * 179.71713 * 13 11 10 28 28 H 1.08992 * 109.47161 * 300.00831 * 1 2 3 29 29 H 1.09007 * 109.46228 * 60.00085 * 1 2 3 30 30 H 1.08997 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47325 * 239.99135 * 2 1 3 32 32 H 1.09008 * 109.46969 * 119.99947 * 2 1 3 33 33 H 1.08999 * 109.46769 * 299.99961 * 3 2 1 34 34 H 1.09001 * 109.47471 * 59.99225 * 3 2 1 35 35 H 1.08998 * 109.46622 * 299.99841 * 4 3 2 36 36 H 1.09003 * 109.47059 * 59.99871 * 4 3 2 37 37 H 1.09000 * 109.47299 * 306.41851 * 7 5 4 38 38 H 1.09007 * 109.47060 * 66.41441 * 7 5 4 39 39 H 1.09003 * 109.47155 * 171.60089 * 8 7 5 40 40 H 1.09003 * 109.47155 * 291.59515 * 8 7 5 41 41 H 1.08994 * 109.47514 * 51.59503 * 8 7 5 42 42 H 1.08995 * 109.47065 * 293.48382 * 9 5 4 43 43 H 1.08996 * 109.46899 * 53.48121 * 9 5 4 44 44 H 1.08999 * 109.59160 * 246.16210 * 14 13 11 45 45 H 1.09007 * 109.58490 * 6.44258 * 14 13 11 46 46 H 1.08999 * 109.49534 * 174.59150 * 15 14 13 47 47 H 1.08996 * 109.49787 * 294.68499 * 15 14 13 48 48 H 1.09000 * 109.45860 * 58.65508 * 16 15 14 49 49 H 1.08998 * 109.45829 * 178.62858 * 16 15 14 50 50 H 0.96999 * 119.99650 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.58831 * 353.41609 * 27 13 11 52 52 H 1.08999 * 109.58837 * 113.84396 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5702 1.4424 0.0006 5 6 4.0802 2.8849 0.0000 6 1 3.6459 3.4235 -0.8423 7 6 3.6749 3.5697 1.3068 8 6 4.0431 5.0532 1.2407 9 6 5.6051 2.8866 -0.1251 10 8 6.0763 4.2510 -0.2808 11 6 7.4052 4.4283 -0.4054 12 8 8.1507 3.4690 -0.3841 13 7 7.9087 5.6698 -0.5526 14 6 7.0200 6.8396 -0.5797 15 6 7.4983 7.8465 0.4712 16 6 8.9734 8.1719 0.2258 17 6 9.8085 6.8968 0.3633 18 1 9.6701 6.4768 1.3595 19 6 11.2645 7.2242 0.1535 20 1 11.5647 8.2400 -0.0573 21 6 12.2133 6.2267 0.2296 22 7 11.8477 4.9896 0.4858 23 14 14.0180 6.6323 -0.0311 24 1 14.4550 7.6217 0.9864 25 1 14.8278 5.3948 0.1025 26 1 14.2058 7.2030 -1.3891 27 6 9.3569 5.8796 -0.6836 28 1 -0.3633 0.5139 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 3.9330 0.9287 0.8909 36 1 3.9338 0.9284 -0.8891 37 1 2.5993 3.4684 1.4517 38 1 4.1993 3.1019 2.1401 39 1 3.6235 5.5706 2.1034 40 1 5.1280 5.1589 1.2461 41 1 3.6404 5.4872 0.3255 42 1 6.0437 2.4508 0.7725 43 1 5.8989 2.2992 -0.9949 44 1 7.0513 7.2996 -1.5673 45 1 6.0000 6.5289 -0.3535 46 1 6.9069 8.7590 0.3962 47 1 7.3810 7.4172 1.4662 48 1 9.0934 8.5782 -0.7785 49 1 9.3097 8.9067 0.9573 50 1 12.5153 4.2879 0.5397 51 1 9.8788 4.9362 -0.5235 52 1 9.5824 6.2599 -1.6799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193964470.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:41 Heat of formation + Delta-G solvation = -140.807121 kcal Electronic energy + Delta-G solvation = -27151.107648 eV Core-core repulsion = 23534.373777 eV Total energy + Delta-G solvation = -3616.733870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61289 -39.45040 -38.37713 -36.94991 -35.34145 -34.97584 -33.49422 -31.65255 -31.45523 -29.27342 -27.11437 -26.47497 -25.01459 -23.76534 -23.47155 -22.26675 -21.79503 -21.10175 -20.42848 -19.01411 -18.18770 -17.99050 -17.64562 -16.54913 -16.40204 -15.94591 -15.61034 -15.40826 -15.10902 -14.84475 -14.66961 -14.46320 -14.42053 -14.24147 -14.00908 -13.76412 -13.54372 -13.28800 -13.18859 -12.90606 -12.84772 -12.71612 -12.37122 -12.29481 -12.25212 -12.03247 -11.97655 -11.89259 -11.67655 -11.66408 -11.55492 -11.49670 -11.37632 -11.31520 -11.00500 -10.95166 -10.87934 -10.52630 -9.52888 -8.11234 -6.28638 1.23580 1.42339 1.44423 1.52037 1.86086 2.42115 2.97867 3.18286 3.74366 3.76043 3.90038 4.10798 4.14700 4.16422 4.25844 4.29202 4.33285 4.39742 4.45658 4.54716 4.57753 4.58943 4.73219 4.75477 4.78016 4.81540 4.84807 4.92093 4.97142 4.97627 5.08198 5.10285 5.20034 5.20242 5.23023 5.24490 5.26900 5.28428 5.34846 5.40731 5.44720 5.50655 5.53025 5.56642 5.60631 5.64226 5.87596 5.98719 6.31313 6.55239 6.84154 7.37631 7.42474 8.92217 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.002727 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.523325 B =10266.806537 C =11066.653684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.113 4.113 4 C -0.110 4.110 5 C -0.075 4.075 6 H 0.089 0.911 7 C -0.116 4.116 8 C -0.153 4.153 9 C 0.084 3.916 10 O -0.350 6.350 11 C 0.634 3.366 12 O -0.619 6.619 13 N -0.590 5.590 14 C 0.109 3.891 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.038 3.962 18 H -0.014 1.014 19 C -0.534 4.534 20 H 0.066 0.934 21 C 0.008 3.992 22 N -0.917 5.917 23 Si 0.960 3.040 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.139 3.861 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.260 0.740 51 H 0.080 0.920 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.377 -2.689 -1.433 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.148 4.148 5 C -0.093 4.093 6 H 0.107 0.893 7 C -0.153 4.153 8 C -0.210 4.210 9 C 0.010 3.990 10 O -0.263 6.263 11 C 0.389 3.611 12 O -0.511 6.511 13 N -0.329 5.329 14 C -0.012 4.012 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.018 3.982 18 H 0.004 0.996 19 C -0.572 4.572 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.555 5.555 23 Si 0.785 3.215 24 H -0.193 1.193 25 H -0.216 1.216 26 H -0.191 1.191 27 C 0.018 3.982 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.153 -3.196 -1.402 23.414 hybrid contribution 1.718 -0.430 0.046 1.771 sum -21.435 -3.626 -1.356 21.782 Atomic orbital electron populations 1.21771 0.95374 1.01819 1.02006 1.21548 0.96287 0.96686 1.01961 1.21611 0.93518 0.97128 1.02803 1.21547 0.96780 0.93887 1.02592 1.21303 0.89760 0.98129 1.00136 0.89256 1.21625 1.02122 0.95676 0.95913 1.21888 1.01352 0.96101 1.01643 1.23232 0.95911 0.78705 1.01192 1.86342 1.20661 1.33533 1.85794 1.18420 0.81728 0.84390 0.76608 1.90953 1.60435 1.41288 1.58450 1.47471 1.08896 1.03508 1.73062 1.21953 0.93621 0.85256 1.00362 1.21906 0.96597 0.99594 0.98168 1.21527 0.94297 0.97302 1.01155 1.18867 0.94177 0.92248 0.92867 0.99570 1.21475 0.92008 0.94782 1.48978 0.91605 1.25934 1.03674 0.94870 0.94638 1.70083 1.35081 1.01185 1.49185 0.85584 0.79456 0.77312 0.79175 1.19290 1.21600 1.19056 1.21778 0.75150 1.02895 0.98387 0.92519 0.92587 0.92580 0.92223 0.92167 0.91490 0.91017 0.91679 0.91626 0.89495 0.92937 0.92566 0.93693 0.92116 0.92960 0.92238 0.90092 0.87919 0.87637 0.93354 0.92048 0.92656 0.93081 0.90201 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.13 -1.52 5.93 30.59 0.18 -1.34 16 3 C -0.11 -1.41 4.98 30.60 0.15 -1.26 16 4 C -0.11 -1.74 4.68 30.59 0.14 -1.60 16 5 C -0.07 -1.45 2.20 -10.79 -0.02 -1.47 16 6 H 0.09 1.63 8.11 -2.38 -0.02 1.61 16 7 C -0.12 -2.14 5.28 30.59 0.16 -1.98 16 8 C -0.15 -3.17 9.01 71.98 0.65 -2.52 16 9 C 0.08 2.40 4.81 71.98 0.35 2.75 16 10 O -0.35 -11.76 5.70 -55.55 -0.32 -12.07 16 11 C 0.63 27.84 8.43 129.79 1.09 28.93 16 12 O -0.62 -32.92 15.55 19.81 0.31 -32.61 16 13 N -0.59 -25.01 2.98 -950.01 -2.83 -27.84 16 14 C 0.11 3.40 6.45 86.36 0.56 3.95 16 15 C -0.12 -3.82 6.08 30.67 0.19 -3.63 16 16 C -0.11 -4.06 5.11 30.62 0.16 -3.91 16 17 C 0.04 1.92 2.24 -11.59 -0.03 1.89 16 18 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 19 C -0.53 -29.31 8.56 25.60 0.22 -29.09 16 20 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.01 0.46 5.30 84.65 0.45 0.91 16 22 N -0.92 -56.10 11.39 21.45 0.24 -55.85 16 23 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.14 7.04 5.38 86.23 0.46 7.51 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.83 6.43 -2.39 -0.02 0.82 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.23 6.29 -2.39 -0.02 1.21 16 38 H 0.05 1.06 8.13 -2.38 -0.02 1.04 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.04 1.21 5.46 -2.39 -0.01 1.19 16 41 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 42 H 0.05 1.64 8.12 -2.39 -0.02 1.62 16 43 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.10 2.73 6.49 -2.38 -0.02 2.71 16 46 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 51 H 0.08 4.84 5.11 -2.39 -0.01 4.82 16 52 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -69.80 397.55 5.71 -64.10 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.85 Total: 19.75 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.42 Total: -1.73 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.58 Total: -83.69 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -0.01 Total: -44.68 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.80 5.71 -64.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964470.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.710 kcal (2) G-P(sol) polarization free energy of solvation -69.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds