Wall clock time and date at job start Fri Apr 10 2020 22:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46830 * 2 1 4 4 C 1.53010 * 109.46891 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46829 * 174.72727 * 4 3 2 6 6 H 1.09007 * 109.47146 * 305.62482 * 5 4 3 7 7 C 1.53001 * 109.47141 * 185.63331 * 5 4 3 8 8 C 1.52998 * 109.47336 * 65.79726 * 7 5 4 9 9 C 1.53001 * 109.47346 * 65.63080 * 5 4 3 10 10 O 1.45200 * 109.46864 * 184.99654 * 9 5 4 11 11 C 1.34636 * 116.99749 * 179.97438 * 10 9 5 12 12 O 1.21512 * 120.00057 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00373 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.62835 * 359.97438 * 13 11 10 15 15 C 1.53193 * 108.77525 * 126.36705 * 14 13 11 16 16 C 1.53047 * 109.31125 * 54.63878 * 15 14 13 17 17 C 1.53046 * 109.53669 * 298.63641 * 16 15 14 18 18 H 1.09000 * 109.49307 * 301.38098 * 17 16 15 19 19 C 1.50696 * 109.49412 * 181.31644 * 17 16 15 20 20 H 1.08002 * 120.00514 * 359.97438 * 19 17 16 21 21 C 1.37880 * 119.99522 * 179.97438 * 19 17 16 22 22 N 1.31508 * 120.00471 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99593 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46953 * 90.00074 * 23 21 19 25 25 H 1.48501 * 109.46767 * 209.99946 * 23 21 19 26 26 H 1.48499 * 109.47271 * 329.99687 * 23 21 19 27 27 C 1.46926 * 120.63705 * 179.72118 * 13 11 10 28 28 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46832 * 299.99672 * 1 2 3 30 30 H 1.08999 * 109.47457 * 59.99980 * 1 2 3 31 31 H 1.09001 * 109.47232 * 240.00518 * 2 1 3 32 32 H 1.08999 * 109.47457 * 120.00020 * 2 1 3 33 33 H 1.08995 * 109.47145 * 60.00520 * 3 2 1 34 34 H 1.08999 * 109.47117 * 300.00228 * 3 2 1 35 35 H 1.09001 * 109.46718 * 294.72424 * 4 3 2 36 36 H 1.09001 * 109.46635 * 54.72669 * 4 3 2 37 37 H 1.08992 * 109.47380 * 185.80077 * 7 5 4 38 38 H 1.09002 * 109.46829 * 305.79791 * 7 5 4 39 39 H 1.09000 * 109.47160 * 174.67761 * 8 7 5 40 40 H 1.09001 * 109.47201 * 294.67765 * 8 7 5 41 41 H 1.08999 * 109.47335 * 54.67157 * 8 7 5 42 42 H 1.08995 * 109.46743 * 304.99799 * 9 5 4 43 43 H 1.08994 * 109.46813 * 65.00076 * 9 5 4 44 44 H 1.08996 * 109.58853 * 246.15965 * 14 13 11 45 45 H 1.09002 * 109.58296 * 6.44369 * 14 13 11 46 46 H 1.09000 * 109.49747 * 174.58575 * 15 14 13 47 47 H 1.08998 * 109.50003 * 294.69189 * 15 14 13 48 48 H 1.09005 * 109.45769 * 58.65244 * 16 15 14 49 49 H 1.08997 * 109.46152 * 178.62775 * 16 15 14 50 50 H 0.96998 * 120.00478 * 180.02562 * 22 21 19 51 51 H 1.09001 * 109.58260 * 353.41924 * 27 13 11 52 52 H 1.09001 * 109.58485 * 113.83935 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0799 2.8790 -0.1332 6 1 3.6362 3.3422 -1.0146 7 6 5.6033 2.8684 -0.2751 8 6 5.9880 2.1973 -1.5951 9 6 3.6892 3.6759 1.1131 10 8 4.0684 5.0664 0.9369 11 6 3.7919 5.9085 1.9504 12 8 3.2482 5.4929 2.9544 13 7 4.1172 7.2126 1.8509 14 6 4.7745 7.7302 0.6430 15 6 3.9641 8.9161 0.1104 16 6 3.7906 9.9514 1.2241 17 6 3.0214 9.3253 2.3897 18 1 2.0509 8.9747 2.0386 19 6 2.8229 10.3548 3.4721 20 1 3.2072 11.3558 3.3424 21 6 2.1508 10.0188 4.6282 22 7 1.6833 8.7998 4.7864 23 14 1.9053 11.2947 5.9702 24 1 0.6315 12.0209 5.7358 25 1 1.8542 10.6194 7.2918 26 1 3.0353 12.2580 5.9501 27 6 3.8165 8.1449 2.9459 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 1.0126 0.9326 36 1 3.9330 0.8492 -0.8399 37 1 5.9762 3.8925 -0.2660 38 1 6.0416 2.3148 0.5553 39 1 7.0654 2.2736 -1.7410 40 1 5.6987 1.1468 -1.5664 41 1 5.4737 2.6933 -2.4183 42 1 2.6118 3.6094 1.2639 43 1 4.2038 3.2664 1.9822 44 1 5.7844 8.0585 0.8886 45 1 4.8188 6.9463 -0.1131 46 1 4.4915 9.3696 -0.7288 47 1 2.9849 8.5690 -0.2192 48 1 4.7706 10.2799 1.5705 49 1 3.2351 10.8074 0.8409 50 1 1.2101 8.5635 5.5995 51 1 3.2268 7.6354 3.7080 52 1 4.7469 8.5077 3.3829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193964472.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:45 Heat of formation + Delta-G solvation = -128.556208 kcal Electronic energy + Delta-G solvation = -27029.483103 eV Core-core repulsion = 23413.280473 eV Total energy + Delta-G solvation = -3616.202631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.99266 -38.16489 -37.07147 -35.46267 -34.42731 -33.33395 -31.78757 -30.73479 -29.77398 -28.24211 -25.23378 -24.95587 -23.93008 -23.17820 -21.80010 -21.20203 -20.54654 -20.05353 -18.82888 -17.38720 -16.60039 -16.17321 -15.93654 -15.52842 -14.96243 -14.64897 -14.44278 -14.19479 -13.82007 -13.64084 -13.53049 -13.27795 -13.18721 -12.97008 -12.62315 -12.58288 -12.30111 -12.14950 -11.91490 -11.80386 -11.64665 -11.47620 -11.23846 -10.99033 -10.91983 -10.88249 -10.77666 -10.51381 -10.49049 -10.43284 -10.37278 -10.22630 -10.01717 -9.89224 -9.70937 -9.11415 -8.99655 -8.43742 -7.79681 -6.00163 -4.09275 2.77935 3.31385 3.38496 3.40763 3.55861 4.36976 4.44083 4.46741 4.63186 4.75873 4.90970 4.97389 5.00990 5.17965 5.29826 5.33569 5.34249 5.46544 5.48212 5.51446 5.54375 5.56997 5.59666 5.62532 5.72486 5.74828 5.79180 5.84204 5.87805 5.96530 6.01791 6.07512 6.09744 6.17706 6.21788 6.25413 6.28395 6.35148 6.57637 6.66225 6.77490 6.90428 6.98201 7.17263 7.27687 7.65078 7.86534 8.00446 8.24427 8.38049 8.93978 9.05844 9.56469 11.05069 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.003089 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.613134 B = 9063.016121 C =10238.997437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.128 4.128 4 C -0.112 4.112 5 C -0.086 4.086 6 H 0.081 0.919 7 C -0.120 4.120 8 C -0.151 4.151 9 C 0.090 3.910 10 O -0.377 6.377 11 C 0.639 3.361 12 O -0.570 6.570 13 N -0.587 5.587 14 C 0.115 3.885 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.039 3.961 18 H 0.029 0.971 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.880 5.880 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.126 3.874 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.264 0.736 51 H 0.124 0.876 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -14.802 -13.096 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.166 4.166 4 C -0.150 4.150 5 C -0.105 4.105 6 H 0.099 0.901 7 C -0.158 4.158 8 C -0.208 4.208 9 C 0.015 3.985 10 O -0.292 6.292 11 C 0.393 3.607 12 O -0.458 6.458 13 N -0.327 5.327 14 C -0.009 4.009 15 C -0.172 4.172 16 C -0.149 4.149 17 C 0.020 3.980 18 H 0.048 0.952 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.517 5.517 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.007 3.993 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.142 0.858 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.193 -15.117 -12.648 20.383 hybrid contribution -0.237 0.649 0.847 1.093 sum 4.956 -14.467 -11.802 19.317 Atomic orbital electron populations 1.21789 0.95950 1.01406 1.02059 1.21521 0.95879 0.96913 1.01762 1.21756 0.95304 0.96842 1.02675 1.21635 0.95512 0.95244 1.02581 1.21281 0.96552 0.94932 0.97700 0.90087 1.21556 0.94706 1.01752 0.97744 1.21810 1.01005 1.00501 0.97529 1.22944 1.00512 0.77012 0.98059 1.86164 1.78388 1.20569 1.44060 1.18172 0.78589 0.82524 0.81439 1.90989 1.47072 1.76525 1.31258 1.47534 1.60750 1.04291 1.20094 1.21584 0.95625 0.96710 0.86942 1.21955 1.00035 0.96646 0.98567 1.21638 1.00412 0.96897 0.95950 1.18932 0.94189 0.92490 0.92424 0.95246 1.21070 1.36433 0.96862 1.01533 0.92220 1.25073 0.95197 0.95367 0.98457 1.69881 1.36782 1.17859 1.27224 0.86575 0.78526 0.81481 0.81316 1.20675 1.21170 1.19883 1.22323 0.99229 0.89797 0.87942 0.92970 0.92556 0.92765 0.92243 0.92100 0.91474 0.91781 0.91663 0.90915 0.91045 0.92077 0.92913 0.92773 0.92713 0.91287 0.91723 0.92180 0.90439 0.92155 0.92178 0.93099 0.92944 0.92598 0.85775 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.13 -1.17 4.86 -26.72 -0.13 -1.30 16 4 C -0.11 -0.98 4.56 -26.73 -0.12 -1.10 16 5 C -0.09 -0.91 2.08 -90.62 -0.19 -1.10 16 6 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 7 C -0.12 -1.19 5.35 -26.73 -0.14 -1.33 16 8 C -0.15 -1.21 9.56 37.16 0.36 -0.86 16 9 C 0.09 1.29 4.72 37.16 0.18 1.47 16 10 O -0.38 -6.58 8.31 -40.31 -0.33 -6.91 16 11 C 0.64 13.86 8.43 54.06 0.46 14.32 16 12 O -0.57 -14.43 15.55 -19.28 -0.30 -14.73 16 13 N -0.59 -12.46 2.98 -178.80 -0.53 -12.99 16 14 C 0.11 1.93 6.45 -3.71 -0.02 1.91 16 15 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 16 C -0.11 -2.23 5.11 -26.68 -0.14 -2.37 16 17 C 0.04 0.97 2.24 -91.86 -0.21 0.76 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 22 N -0.88 -25.71 11.39 55.43 0.63 -25.08 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 27 C 0.13 3.10 5.38 -3.92 -0.02 3.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.71 6.74 -51.93 -0.35 0.36 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 37 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.39 6.73 -51.93 -0.35 0.04 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.04 6.48 -51.93 -0.34 0.71 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.17 6.92 -51.93 -0.36 0.81 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.12 3.56 5.12 -51.93 -0.27 3.29 16 52 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -30.57 400.49 -9.82 -40.38 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -9.97 Total: 0.78 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.33 Total: -3.70 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.10 Total: -38.07 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.63 Total: -21.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.57 -9.82 -40.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964472.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.173 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds