Wall clock time and date at job start Fri Apr 10 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46830 * 2 1 4 4 C 1.53010 * 109.46891 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46829 * 174.72727 * 4 3 2 6 6 H 1.09007 * 109.47146 * 305.62482 * 5 4 3 7 7 C 1.53001 * 109.47141 * 185.63331 * 5 4 3 8 8 C 1.52998 * 109.47336 * 65.79726 * 7 5 4 9 9 C 1.53001 * 109.47346 * 65.63080 * 5 4 3 10 10 O 1.45200 * 109.46864 * 184.99654 * 9 5 4 11 11 C 1.34636 * 116.99749 * 179.97438 * 10 9 5 12 12 O 1.21512 * 120.00057 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00373 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.62835 * 359.97438 * 13 11 10 15 15 C 1.53193 * 108.77525 * 126.36705 * 14 13 11 16 16 C 1.53047 * 109.31125 * 54.63878 * 15 14 13 17 17 C 1.53046 * 109.53669 * 298.63641 * 16 15 14 18 18 H 1.09000 * 109.49307 * 301.38098 * 17 16 15 19 19 C 1.50696 * 109.49412 * 181.31644 * 17 16 15 20 20 H 1.08002 * 120.00514 * 359.97438 * 19 17 16 21 21 C 1.37880 * 119.99522 * 179.97438 * 19 17 16 22 22 N 1.31508 * 120.00471 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99593 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46953 * 90.00074 * 23 21 19 25 25 H 1.48501 * 109.46767 * 209.99946 * 23 21 19 26 26 H 1.48499 * 109.47271 * 329.99687 * 23 21 19 27 27 C 1.46926 * 120.63705 * 179.72118 * 13 11 10 28 28 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46832 * 299.99672 * 1 2 3 30 30 H 1.08999 * 109.47457 * 59.99980 * 1 2 3 31 31 H 1.09001 * 109.47232 * 240.00518 * 2 1 3 32 32 H 1.08999 * 109.47457 * 120.00020 * 2 1 3 33 33 H 1.08995 * 109.47145 * 60.00520 * 3 2 1 34 34 H 1.08999 * 109.47117 * 300.00228 * 3 2 1 35 35 H 1.09001 * 109.46718 * 294.72424 * 4 3 2 36 36 H 1.09001 * 109.46635 * 54.72669 * 4 3 2 37 37 H 1.08992 * 109.47380 * 185.80077 * 7 5 4 38 38 H 1.09002 * 109.46829 * 305.79791 * 7 5 4 39 39 H 1.09000 * 109.47160 * 174.67761 * 8 7 5 40 40 H 1.09001 * 109.47201 * 294.67765 * 8 7 5 41 41 H 1.08999 * 109.47335 * 54.67157 * 8 7 5 42 42 H 1.08995 * 109.46743 * 304.99799 * 9 5 4 43 43 H 1.08994 * 109.46813 * 65.00076 * 9 5 4 44 44 H 1.08996 * 109.58853 * 246.15965 * 14 13 11 45 45 H 1.09002 * 109.58296 * 6.44369 * 14 13 11 46 46 H 1.09000 * 109.49747 * 174.58575 * 15 14 13 47 47 H 1.08998 * 109.50003 * 294.69189 * 15 14 13 48 48 H 1.09005 * 109.45769 * 58.65244 * 16 15 14 49 49 H 1.08997 * 109.46152 * 178.62775 * 16 15 14 50 50 H 0.96998 * 120.00478 * 180.02562 * 22 21 19 51 51 H 1.09001 * 109.58260 * 353.41924 * 27 13 11 52 52 H 1.09001 * 109.58485 * 113.83935 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0799 2.8790 -0.1332 6 1 3.6362 3.3422 -1.0146 7 6 5.6033 2.8684 -0.2751 8 6 5.9880 2.1973 -1.5951 9 6 3.6892 3.6759 1.1131 10 8 4.0684 5.0664 0.9369 11 6 3.7919 5.9085 1.9504 12 8 3.2482 5.4929 2.9544 13 7 4.1172 7.2126 1.8509 14 6 4.7745 7.7302 0.6430 15 6 3.9641 8.9161 0.1104 16 6 3.7906 9.9514 1.2241 17 6 3.0214 9.3253 2.3897 18 1 2.0509 8.9747 2.0386 19 6 2.8229 10.3548 3.4721 20 1 3.2072 11.3558 3.3424 21 6 2.1508 10.0188 4.6282 22 7 1.6833 8.7998 4.7864 23 14 1.9053 11.2947 5.9702 24 1 0.6315 12.0209 5.7358 25 1 1.8542 10.6194 7.2918 26 1 3.0353 12.2580 5.9501 27 6 3.8165 8.1449 2.9459 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 1.0126 0.9326 36 1 3.9330 0.8492 -0.8399 37 1 5.9762 3.8925 -0.2660 38 1 6.0416 2.3148 0.5553 39 1 7.0654 2.2736 -1.7410 40 1 5.6987 1.1468 -1.5664 41 1 5.4737 2.6933 -2.4183 42 1 2.6118 3.6094 1.2639 43 1 4.2038 3.2664 1.9822 44 1 5.7844 8.0585 0.8886 45 1 4.8188 6.9463 -0.1131 46 1 4.4915 9.3696 -0.7288 47 1 2.9849 8.5690 -0.2192 48 1 4.7706 10.2799 1.5705 49 1 3.2351 10.8074 0.8409 50 1 1.2101 8.5635 5.5995 51 1 3.2268 7.6354 3.7080 52 1 4.7469 8.5077 3.3829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193964472.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:44 Heat of formation + Delta-G solvation = -143.606595 kcal Electronic energy + Delta-G solvation = -27030.135737 eV Core-core repulsion = 23413.280473 eV Total energy + Delta-G solvation = -3616.855264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61094 -39.46836 -38.39326 -36.95241 -35.36668 -35.14969 -33.51931 -31.61877 -31.45192 -29.22630 -27.12367 -26.42804 -25.11713 -23.91969 -23.49011 -22.22042 -21.88792 -20.97712 -20.49693 -19.07200 -18.21495 -18.02847 -17.46326 -16.61630 -16.37054 -15.84631 -15.61568 -15.47816 -15.16216 -15.13087 -14.67494 -14.52795 -14.39525 -14.05062 -13.99962 -13.81897 -13.70636 -13.50165 -13.15620 -12.88375 -12.76555 -12.70741 -12.36608 -12.30121 -12.25382 -12.22060 -11.97457 -11.91247 -11.72427 -11.67073 -11.65125 -11.48512 -11.45480 -11.19710 -11.08578 -11.01402 -10.88953 -10.53222 -9.54988 -8.11476 -6.28856 1.21356 1.42456 1.42993 1.53592 1.82748 2.42012 2.98217 3.18248 3.65958 3.72266 3.92894 4.08330 4.14242 4.15097 4.16433 4.26950 4.29070 4.37537 4.45994 4.50727 4.57643 4.60179 4.71333 4.73644 4.77395 4.79632 4.82166 4.84055 4.88398 5.03951 5.07787 5.10044 5.12396 5.15295 5.17511 5.23570 5.25954 5.27233 5.32912 5.37493 5.42464 5.45006 5.50939 5.54402 5.56446 5.60278 5.86891 5.97834 6.30915 6.52057 6.84038 7.34723 7.42016 8.92169 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.003089 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.613134 B = 9063.016121 C =10238.997437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.129 4.129 4 C -0.105 4.105 5 C -0.075 4.075 6 H 0.084 0.916 7 C -0.119 4.119 8 C -0.147 4.147 9 C 0.084 3.916 10 O -0.361 6.361 11 C 0.636 3.364 12 O -0.616 6.616 13 N -0.590 5.590 14 C 0.110 3.890 15 C -0.125 4.125 16 C -0.106 4.106 17 C 0.037 3.963 18 H -0.014 1.014 19 C -0.534 4.534 20 H 0.066 0.934 21 C 0.009 3.991 22 N -0.916 5.916 23 Si 0.960 3.040 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.260 1.260 27 C 0.139 3.861 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.260 0.740 51 H 0.080 0.920 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.182 -14.896 -15.339 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.167 4.167 4 C -0.143 4.143 5 C -0.094 4.094 6 H 0.102 0.898 7 C -0.157 4.157 8 C -0.204 4.204 9 C 0.009 3.991 10 O -0.275 6.275 11 C 0.391 3.609 12 O -0.509 6.509 13 N -0.330 5.330 14 C -0.011 4.011 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.018 3.982 18 H 0.005 0.995 19 C -0.572 4.572 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.555 5.555 23 Si 0.785 3.215 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.185 1.185 27 C 0.018 3.982 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.939 -15.202 -14.948 22.420 hybrid contribution -0.787 0.634 1.509 1.816 sum 6.152 -14.568 -13.439 20.753 Atomic orbital electron populations 1.21811 0.96191 1.01937 1.01499 1.21507 0.95691 0.96062 1.02534 1.21750 0.95758 0.97555 1.01610 1.21623 0.95003 0.94010 1.03620 1.21295 0.97407 0.95270 0.95403 0.89776 1.21543 0.93717 1.01220 0.99193 1.21775 1.01489 1.00997 0.96104 1.23301 0.99866 0.75640 1.00291 1.86180 1.77804 1.21587 1.41964 1.18334 0.77969 0.83079 0.81540 1.90955 1.49074 1.77505 1.33324 1.47502 1.60738 1.03911 1.20820 1.21931 0.96186 0.97460 0.85520 1.21914 1.00137 0.95654 0.98603 1.21536 1.00013 0.97663 0.95117 1.18873 0.92956 0.92449 0.93925 0.99544 1.21500 1.35979 0.97584 1.02145 0.91578 1.25927 0.95049 0.97115 1.00974 1.70081 1.37802 1.19967 1.27638 0.85528 0.78850 0.79057 0.78079 1.20150 1.21411 1.18451 1.21793 0.98302 0.89884 0.88187 0.91895 0.93838 0.92650 0.90677 0.92033 0.93757 0.91704 0.91592 0.88565 0.92540 0.91973 0.92280 0.91483 0.92446 0.92558 0.92361 0.89912 0.88130 0.87542 0.93396 0.91985 0.92585 0.93087 0.90216 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.12 -1.78 5.93 30.60 0.18 -1.59 16 3 C -0.13 -2.28 4.86 30.60 0.15 -2.13 16 4 C -0.11 -1.66 4.56 30.60 0.14 -1.52 16 5 C -0.08 -1.49 2.08 -10.79 -0.02 -1.52 16 6 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 7 C -0.12 -2.14 5.35 30.59 0.16 -1.98 16 8 C -0.15 -1.92 9.56 71.98 0.69 -1.23 16 9 C 0.08 2.45 4.72 71.98 0.34 2.79 16 10 O -0.36 -12.65 8.31 -55.45 -0.46 -13.11 16 11 C 0.64 28.42 8.43 129.79 1.09 29.51 16 12 O -0.62 -33.01 15.55 19.80 0.31 -32.71 16 13 N -0.59 -25.31 2.98 -950.00 -2.83 -28.13 16 14 C 0.11 3.47 6.45 86.36 0.56 4.02 16 15 C -0.13 -3.86 6.08 30.67 0.19 -3.68 16 16 C -0.11 -4.09 5.11 30.63 0.16 -3.94 16 17 C 0.04 1.90 2.24 -11.59 -0.03 1.87 16 18 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 19 C -0.53 -29.30 8.56 25.60 0.22 -29.09 16 20 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 21 C 0.01 0.49 5.31 84.66 0.45 0.94 16 22 N -0.92 -56.01 11.39 21.45 0.24 -55.77 16 23 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 27 C 0.14 7.08 5.38 86.23 0.46 7.55 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 0.97 6.74 -2.39 -0.02 0.96 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.13 6.47 -2.39 -0.02 1.11 16 37 H 0.06 1.19 7.67 -2.39 -0.02 1.17 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.72 6.73 -2.39 -0.02 0.70 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 1.79 6.48 -2.39 -0.02 1.78 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.10 2.73 6.92 -2.39 -0.02 2.71 16 46 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 51 H 0.08 4.84 5.12 -2.39 -0.01 4.83 16 52 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.25 400.49 5.59 -64.66 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.85 Total: 20.51 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.45 Total: -1.70 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.58 Total: -83.90 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -0.15 Total: -45.82 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -70.25 5.59 -64.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193964472.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.944 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds