Wall clock time and date at job start Fri Apr 10 2020 22:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47253 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47252 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47061 * 304.99773 * 5 4 3 7 7 C 1.53000 * 109.47288 * 64.99835 * 5 4 3 8 8 C 1.53006 * 109.47469 * 186.42820 * 7 5 4 9 9 C 1.52999 * 109.47326 * 184.99918 * 5 4 3 10 10 O 1.45202 * 109.47497 * 173.51920 * 9 5 4 11 11 C 1.34632 * 117.00214 * 179.97438 * 10 9 5 12 12 O 1.21512 * 119.99961 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99821 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99834 * 179.72504 * 13 11 10 15 15 H 1.09002 * 109.41042 * 35.41891 * 14 13 11 16 16 C 1.52956 * 109.41364 * 155.27914 * 14 13 11 17 17 C 1.53224 * 109.40589 * 183.70611 * 16 14 13 18 18 C 1.51267 * 108.53477 * 305.37313 * 17 16 14 19 19 C 1.37877 * 120.84846 * 231.36657 * 18 17 16 20 20 N 1.31518 * 120.00234 * 359.97438 * 19 18 17 21 21 Si 1.86796 * 119.99968 * 180.02562 * 19 18 17 22 22 H 1.48499 * 109.47403 * 90.00247 * 21 19 18 23 23 H 1.48502 * 109.47340 * 209.99805 * 21 19 18 24 24 H 1.48497 * 109.47378 * 329.99850 * 21 19 18 25 25 C 1.51270 * 118.30202 * 51.35106 * 18 17 16 26 26 C 1.52960 * 109.41502 * 275.63252 * 14 13 11 27 27 H 1.09003 * 109.47429 * 60.00036 * 1 2 3 28 28 H 1.08999 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47250 * 299.99613 * 1 2 3 30 30 H 1.09007 * 109.47168 * 240.00566 * 2 1 3 31 31 H 1.08996 * 109.47641 * 120.00324 * 2 1 3 32 32 H 1.09007 * 109.46720 * 60.00292 * 3 2 1 33 33 H 1.08996 * 109.47210 * 300.00587 * 3 2 1 34 34 H 1.08997 * 109.47182 * 60.00247 * 4 3 2 35 35 H 1.09002 * 109.46750 * 300.00292 * 4 3 2 36 36 H 1.08997 * 109.47267 * 306.42985 * 7 5 4 37 37 H 1.09001 * 109.47296 * 66.42931 * 7 5 4 38 38 H 1.09000 * 109.46683 * 51.62321 * 8 7 5 39 39 H 1.08994 * 109.47361 * 171.62641 * 8 7 5 40 40 H 1.09001 * 109.46540 * 291.62891 * 8 7 5 41 41 H 1.09004 * 109.47045 * 53.51824 * 9 5 4 42 42 H 1.09002 * 109.47343 * 293.52101 * 9 5 4 43 43 H 0.97001 * 120.00291 * 0.02562 * 13 11 10 44 44 H 1.09004 * 109.48268 * 303.68997 * 16 14 13 45 45 H 1.08999 * 109.48187 * 63.72688 * 16 14 13 46 46 H 1.09006 * 109.62503 * 65.08835 * 17 16 14 47 47 H 1.08998 * 109.62719 * 185.46372 * 17 16 14 48 48 H 0.96993 * 120.00249 * 179.97438 * 20 19 18 49 49 H 1.08998 * 109.62752 * 68.36104 * 25 18 17 50 50 H 1.08997 * 109.62493 * 188.93639 * 25 18 17 51 51 H 1.08995 * 109.48191 * 296.27638 * 26 14 13 52 52 H 1.09005 * 109.48025 * 56.32070 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4246 -0.8413 7 6 3.6756 3.5684 1.3079 8 6 4.0435 5.0522 1.2431 9 6 5.6046 2.8871 -0.1263 10 8 6.0759 4.2519 -0.2799 11 6 7.4047 4.4295 -0.4042 12 8 8.1502 3.4701 -0.3854 13 7 7.9078 5.6712 -0.5506 14 6 9.3542 5.8649 -0.6798 15 1 9.7822 5.0344 -1.2412 16 6 9.6275 7.1744 -1.4215 17 6 11.1362 7.3315 -1.6382 18 6 11.8288 7.2178 -0.2982 19 6 12.7284 8.1769 0.1163 20 7 12.9942 9.2071 -0.6569 21 14 13.5707 8.0125 1.7754 22 1 14.8356 7.2513 1.6152 23 1 13.8709 9.3634 2.3142 24 1 12.6753 7.2923 2.7160 25 6 11.5090 6.0251 0.5755 26 6 9.9868 5.9155 0.7119 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9290 -0.8909 35 1 3.9336 0.9286 0.8891 36 1 2.6003 3.4667 1.4537 37 1 4.2010 3.0999 2.1401 38 1 3.6394 5.4871 0.3290 39 1 3.6250 5.5683 2.1071 40 1 5.1284 5.1579 1.2471 41 1 5.8978 2.3013 -0.9976 42 1 6.0441 2.4497 0.7701 43 1 7.3126 6.4370 -0.5660 44 1 9.1213 7.1580 -2.3868 45 1 9.2561 8.0114 -0.8303 46 1 11.4943 6.5456 -2.3033 47 1 11.3432 8.3066 -2.0790 48 1 13.6268 9.8820 -0.3652 49 1 11.9016 5.1183 0.1153 50 1 11.9559 6.1623 1.5602 51 1 9.6068 6.7823 1.2526 52 1 9.7354 5.0067 1.2587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193972734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:48 Heat of formation + Delta-G solvation = -136.902944 kcal Electronic energy + Delta-G solvation = -26406.901769 eV Core-core repulsion = 22790.337197 eV Total energy + Delta-G solvation = -3616.564572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.27150 -38.27082 -37.15403 -35.77767 -34.37155 -33.76564 -31.57004 -30.87553 -29.69821 -28.56838 -27.16767 -24.69139 -23.11445 -22.54067 -21.56744 -21.40220 -20.68473 -20.24297 -19.62389 -18.16989 -16.80760 -16.43597 -16.03585 -15.86258 -14.97033 -14.84924 -14.46965 -14.30520 -14.10344 -13.92722 -13.41815 -13.13374 -13.08385 -12.82310 -12.65415 -12.49069 -12.36145 -12.20293 -12.06917 -11.68876 -11.61603 -11.49605 -11.42082 -11.04152 -11.03358 -10.88710 -10.86915 -10.75986 -10.72908 -10.64020 -10.34782 -10.14089 -10.04820 -9.95417 -9.55801 -9.04869 -8.90185 -8.50885 -8.34556 -6.11600 -4.02566 2.45758 3.19351 3.27746 3.35929 3.37169 4.21417 4.37830 4.43491 4.53817 4.65659 4.68011 4.83993 4.96074 5.05599 5.16163 5.22335 5.25988 5.31308 5.36642 5.40725 5.46273 5.49410 5.61323 5.63285 5.67374 5.73509 5.80139 5.84114 5.85656 5.94456 5.98996 6.04413 6.14851 6.16752 6.33140 6.41339 6.46322 6.55380 6.69721 6.79671 6.88117 6.94388 7.09516 7.21453 7.42663 7.63234 7.69437 7.75077 7.90267 8.36249 8.72042 8.94382 9.53163 10.97762 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.033890 B = 0.002214 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.993482 B =12641.554601 C =12733.546112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.088 4.088 6 H 0.082 0.918 7 C -0.118 4.118 8 C -0.153 4.153 9 C 0.092 3.908 10 O -0.368 6.368 11 C 0.639 3.361 12 O -0.577 6.577 13 N -0.703 5.703 14 C 0.170 3.830 15 H 0.080 0.920 16 C -0.114 4.114 17 C 0.013 3.987 18 C -0.488 4.488 19 C 0.076 3.924 20 N -0.890 5.890 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.264 1.264 25 C -0.019 4.019 26 C -0.115 4.115 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.007 0.993 47 H 0.062 0.938 48 H 0.264 0.736 49 H 0.020 0.980 50 H 0.036 0.964 51 H 0.052 0.948 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.612 -12.265 1.852 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.151 4.151 5 C -0.107 4.107 6 H 0.100 0.900 7 C -0.155 4.155 8 C -0.210 4.210 9 C 0.017 3.983 10 O -0.283 6.283 11 C 0.391 3.609 12 O -0.467 6.467 13 N -0.360 5.360 14 C 0.068 3.932 15 H 0.098 0.902 16 C -0.152 4.152 17 C -0.024 4.024 18 C -0.507 4.507 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.189 1.189 25 C -0.057 4.057 26 C -0.154 4.154 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.233 0.767 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.071 0.929 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.173 -12.623 1.842 25.580 hybrid contribution 0.239 0.253 0.914 0.978 sum -21.934 -12.370 2.756 25.332 Atomic orbital electron populations 1.21777 0.95949 1.01527 1.01800 1.21546 0.95803 0.96971 1.02059 1.21656 0.94840 0.96764 1.02414 1.21555 0.95801 0.95157 1.02625 1.21327 0.92887 0.96831 0.99648 0.89978 1.21620 1.00966 0.96504 0.96452 1.21886 1.03121 0.95148 1.00887 1.22945 0.93597 0.79588 1.02150 1.86333 1.23236 1.32513 1.86191 1.18337 0.80841 0.84972 0.76756 1.90976 1.59170 1.40094 1.56412 1.45341 1.09810 1.04924 1.75897 1.21128 0.74624 0.99490 0.97913 0.90172 1.21962 1.01595 0.94556 0.97118 1.19344 0.88210 0.98856 0.96029 1.20049 1.23410 1.05345 1.01945 1.24842 0.95986 0.94672 0.97140 1.69831 1.34511 1.11313 1.37097 0.86674 0.79963 0.77037 0.84773 1.20391 1.21661 1.18945 1.19797 0.91177 0.97395 0.97317 1.21940 0.99252 0.99225 0.94974 0.92773 0.92875 0.92777 0.92044 0.92034 0.91522 0.91884 0.91529 0.91509 0.91756 0.92142 0.92832 0.93554 0.91041 0.91509 0.91426 0.76673 0.94373 0.92481 0.97460 0.91945 0.92581 0.96179 0.94526 0.92899 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.75 4.98 -26.73 -0.13 -0.88 16 4 C -0.11 -0.81 4.68 -26.74 -0.13 -0.94 16 5 C -0.09 -0.77 2.20 -90.62 -0.20 -0.97 16 6 H 0.08 0.73 8.11 -51.93 -0.42 0.30 16 7 C -0.12 -1.02 5.28 -26.73 -0.14 -1.16 16 8 C -0.15 -1.51 9.01 37.16 0.33 -1.18 16 9 C 0.09 1.08 4.81 37.16 0.18 1.26 16 10 O -0.37 -5.15 7.10 -40.30 -0.29 -5.44 16 11 C 0.64 11.06 8.70 54.06 0.47 11.53 16 12 O -0.58 -11.93 15.80 -19.28 -0.30 -12.23 16 13 N -0.70 -11.72 5.08 -58.77 -0.30 -12.02 16 14 C 0.17 3.35 2.35 -67.97 -0.16 3.19 16 15 H 0.08 1.74 7.58 -51.93 -0.39 1.34 16 16 C -0.11 -2.30 5.40 -26.64 -0.14 -2.44 16 17 C 0.01 0.33 5.96 -27.49 -0.16 0.16 16 18 C -0.49 -12.71 5.51 -98.92 -0.55 -13.26 16 19 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 20 N -0.89 -25.20 12.74 55.43 0.71 -24.49 16 21 Si 0.89 21.00 27.53 -169.99 -4.68 16.32 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -6.08 6.10 56.52 0.34 -5.74 16 25 C -0.02 -0.45 5.59 -27.49 -0.15 -0.60 16 26 C -0.11 -2.43 5.50 -26.63 -0.15 -2.58 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.41 6.43 -51.93 -0.33 0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.47 6.29 -51.93 -0.33 0.15 16 37 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 38 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.85 5.89 -51.93 -0.31 0.54 16 41 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 42 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 43 H 0.40 5.62 8.71 -40.82 -0.36 5.27 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.06 1.65 7.08 -51.93 -0.37 1.28 16 48 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.04 0.86 4.59 -51.93 -0.24 0.62 16 51 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 52 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -29.12 397.49 -9.65 -38.78 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -9.96 Total: 0.35 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.82 Total: -7.26 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.41 Total: -36.51 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.59 Total: -17.67 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.68 Total: 16.32 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.12 -9.65 -38.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193972734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.128 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds