Wall clock time and date at job start Fri Apr 10 2020 22:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47253 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47252 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47061 * 304.99773 * 5 4 3 7 7 C 1.53000 * 109.47288 * 64.99835 * 5 4 3 8 8 C 1.53006 * 109.47469 * 186.42820 * 7 5 4 9 9 C 1.52999 * 109.47326 * 184.99918 * 5 4 3 10 10 O 1.45202 * 109.47497 * 173.51920 * 9 5 4 11 11 C 1.34632 * 117.00214 * 179.97438 * 10 9 5 12 12 O 1.21512 * 119.99961 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99821 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99834 * 179.72504 * 13 11 10 15 15 H 1.09002 * 109.41042 * 35.41891 * 14 13 11 16 16 C 1.52956 * 109.41364 * 155.27914 * 14 13 11 17 17 C 1.53224 * 109.40589 * 183.70611 * 16 14 13 18 18 C 1.51267 * 108.53477 * 305.37313 * 17 16 14 19 19 C 1.37877 * 120.84846 * 231.36657 * 18 17 16 20 20 N 1.31518 * 120.00234 * 359.97438 * 19 18 17 21 21 Si 1.86796 * 119.99968 * 180.02562 * 19 18 17 22 22 H 1.48499 * 109.47403 * 90.00247 * 21 19 18 23 23 H 1.48502 * 109.47340 * 209.99805 * 21 19 18 24 24 H 1.48497 * 109.47378 * 329.99850 * 21 19 18 25 25 C 1.51270 * 118.30202 * 51.35106 * 18 17 16 26 26 C 1.52960 * 109.41502 * 275.63252 * 14 13 11 27 27 H 1.09003 * 109.47429 * 60.00036 * 1 2 3 28 28 H 1.08999 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47250 * 299.99613 * 1 2 3 30 30 H 1.09007 * 109.47168 * 240.00566 * 2 1 3 31 31 H 1.08996 * 109.47641 * 120.00324 * 2 1 3 32 32 H 1.09007 * 109.46720 * 60.00292 * 3 2 1 33 33 H 1.08996 * 109.47210 * 300.00587 * 3 2 1 34 34 H 1.08997 * 109.47182 * 60.00247 * 4 3 2 35 35 H 1.09002 * 109.46750 * 300.00292 * 4 3 2 36 36 H 1.08997 * 109.47267 * 306.42985 * 7 5 4 37 37 H 1.09001 * 109.47296 * 66.42931 * 7 5 4 38 38 H 1.09000 * 109.46683 * 51.62321 * 8 7 5 39 39 H 1.08994 * 109.47361 * 171.62641 * 8 7 5 40 40 H 1.09001 * 109.46540 * 291.62891 * 8 7 5 41 41 H 1.09004 * 109.47045 * 53.51824 * 9 5 4 42 42 H 1.09002 * 109.47343 * 293.52101 * 9 5 4 43 43 H 0.97001 * 120.00291 * 0.02562 * 13 11 10 44 44 H 1.09004 * 109.48268 * 303.68997 * 16 14 13 45 45 H 1.08999 * 109.48187 * 63.72688 * 16 14 13 46 46 H 1.09006 * 109.62503 * 65.08835 * 17 16 14 47 47 H 1.08998 * 109.62719 * 185.46372 * 17 16 14 48 48 H 0.96993 * 120.00249 * 179.97438 * 20 19 18 49 49 H 1.08998 * 109.62752 * 68.36104 * 25 18 17 50 50 H 1.08997 * 109.62493 * 188.93639 * 25 18 17 51 51 H 1.08995 * 109.48191 * 296.27638 * 26 14 13 52 52 H 1.09005 * 109.48025 * 56.32070 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4246 -0.8413 7 6 3.6756 3.5684 1.3079 8 6 4.0435 5.0522 1.2431 9 6 5.6046 2.8871 -0.1263 10 8 6.0759 4.2519 -0.2799 11 6 7.4047 4.4295 -0.4042 12 8 8.1502 3.4701 -0.3854 13 7 7.9078 5.6712 -0.5506 14 6 9.3542 5.8649 -0.6798 15 1 9.7822 5.0344 -1.2412 16 6 9.6275 7.1744 -1.4215 17 6 11.1362 7.3315 -1.6382 18 6 11.8288 7.2178 -0.2982 19 6 12.7284 8.1769 0.1163 20 7 12.9942 9.2071 -0.6569 21 14 13.5707 8.0125 1.7754 22 1 14.8356 7.2513 1.6152 23 1 13.8709 9.3634 2.3142 24 1 12.6753 7.2923 2.7160 25 6 11.5090 6.0251 0.5755 26 6 9.9868 5.9155 0.7119 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9290 -0.8909 35 1 3.9336 0.9286 0.8891 36 1 2.6003 3.4667 1.4537 37 1 4.2010 3.0999 2.1401 38 1 3.6394 5.4871 0.3290 39 1 3.6250 5.5683 2.1071 40 1 5.1284 5.1579 1.2471 41 1 5.8978 2.3013 -0.9976 42 1 6.0441 2.4497 0.7701 43 1 7.3126 6.4370 -0.5660 44 1 9.1213 7.1580 -2.3868 45 1 9.2561 8.0114 -0.8303 46 1 11.4943 6.5456 -2.3033 47 1 11.3432 8.3066 -2.0790 48 1 13.6268 9.8820 -0.3652 49 1 11.9016 5.1183 0.1153 50 1 11.9559 6.1623 1.5602 51 1 9.6068 6.7823 1.2526 52 1 9.7354 5.0067 1.2587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193972734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:47 Heat of formation + Delta-G solvation = -151.584612 kcal Electronic energy + Delta-G solvation = -26407.538414 eV Core-core repulsion = 22790.337197 eV Total energy + Delta-G solvation = -3617.201217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58663 -39.43485 -38.39867 -36.97684 -35.48242 -35.02884 -33.40817 -31.54842 -31.49076 -29.59840 -28.69569 -25.54270 -24.20172 -23.74156 -23.34748 -22.26152 -21.81576 -21.33069 -21.01389 -19.56269 -17.99423 -17.92846 -17.66055 -16.42576 -16.39184 -16.31701 -15.91142 -15.25993 -14.94668 -14.85521 -14.60617 -14.47233 -14.29857 -14.11608 -14.04415 -13.84954 -13.46528 -13.37674 -13.18984 -12.94479 -12.80742 -12.67193 -12.57015 -12.38231 -12.04313 -12.01426 -11.98403 -11.89263 -11.71193 -11.65020 -11.50405 -11.41444 -11.38505 -11.31415 -10.96859 -10.89814 -10.70955 -10.54584 -9.99834 -8.16496 -6.10884 1.19464 1.39783 1.42961 1.50442 1.80309 2.41627 3.07315 3.23228 3.74788 3.78684 3.91307 4.01186 4.14423 4.16715 4.25772 4.33203 4.40169 4.43931 4.46377 4.54302 4.57526 4.70330 4.74757 4.77770 4.81608 4.90232 4.95286 4.96287 4.97729 5.02747 5.06064 5.12782 5.19626 5.20303 5.21291 5.23549 5.25244 5.32959 5.38538 5.44357 5.49620 5.53757 5.55417 5.56377 5.61900 5.66074 5.75946 5.82610 6.34779 6.51080 6.94406 7.37980 7.47317 8.93771 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.033890 B = 0.002214 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.993482 B =12641.554601 C =12733.546112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.110 4.110 5 C -0.078 4.078 6 H 0.085 0.915 7 C -0.117 4.117 8 C -0.153 4.153 9 C 0.086 3.914 10 O -0.355 6.355 11 C 0.641 3.359 12 O -0.612 6.612 13 N -0.692 5.692 14 C 0.183 3.817 15 H 0.061 0.939 16 C -0.100 4.100 17 C 0.009 3.991 18 C -0.499 4.499 19 C 0.026 3.974 20 N -0.927 5.927 21 Si 0.937 3.063 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.252 1.252 25 C -0.020 4.020 26 C -0.108 4.108 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.415 0.585 44 H 0.061 0.939 45 H 0.060 0.940 46 H -0.001 1.001 47 H 0.036 0.964 48 H 0.263 0.737 49 H 0.015 0.985 50 H 0.038 0.962 51 H 0.057 0.943 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.829 -13.061 2.725 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.147 4.147 5 C -0.097 4.097 6 H 0.103 0.897 7 C -0.154 4.154 8 C -0.210 4.210 9 C 0.011 3.989 10 O -0.269 6.269 11 C 0.394 3.606 12 O -0.504 6.504 13 N -0.351 5.351 14 C 0.080 3.920 15 H 0.080 0.920 16 C -0.139 4.139 17 C -0.029 4.029 18 C -0.518 4.518 19 C -0.173 4.173 20 N -0.566 5.566 21 Si 0.764 3.236 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.176 1.176 25 C -0.059 4.059 26 C -0.147 4.147 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.252 0.748 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.034 0.966 50 H 0.056 0.944 51 H 0.076 0.924 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -24.439 -13.420 2.721 28.014 hybrid contribution 0.877 0.439 0.591 1.145 sum -23.561 -12.982 3.312 27.104 Atomic orbital electron populations 1.21779 0.95572 1.01800 1.01928 1.21545 0.96140 0.96700 1.02041 1.21622 0.93899 0.97080 1.02654 1.21537 0.96501 0.93912 1.02788 1.21311 0.90414 0.98041 0.99927 0.89666 1.21628 1.02062 0.95559 0.96138 1.21872 1.01623 0.96168 1.01346 1.23252 0.95533 0.78331 1.01764 1.86385 1.20980 1.33972 1.85553 1.18393 0.81652 0.84445 0.76061 1.90958 1.60338 1.41222 1.57894 1.44965 1.08818 1.05595 1.75679 1.20718 0.76215 0.98375 0.96688 0.92046 1.21722 0.98646 0.94891 0.98593 1.19304 0.91241 0.97093 0.95287 1.20578 1.22879 1.05694 1.02675 1.25549 0.96861 0.94733 1.00117 1.69948 1.35654 1.12294 1.38745 0.85861 0.79153 0.76986 0.81627 1.20353 1.21639 1.17608 1.19795 0.93105 0.96142 0.96813 1.21822 0.97470 0.99492 0.95918 0.92707 0.92588 0.92588 0.92156 0.92014 0.91148 0.91745 0.91458 0.91359 0.89963 0.92406 0.92662 0.92854 0.93140 0.91787 0.92026 0.74838 0.91995 0.92114 0.98212 0.94511 0.92736 0.96618 0.94401 0.92414 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.13 -1.25 5.93 30.60 0.18 -1.07 16 3 C -0.12 -1.18 4.98 30.59 0.15 -1.02 16 4 C -0.11 -1.35 4.68 30.59 0.14 -1.20 16 5 C -0.08 -1.21 2.20 -10.80 -0.02 -1.23 16 6 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 7 C -0.12 -1.75 5.28 30.60 0.16 -1.58 16 8 C -0.15 -2.72 9.01 71.98 0.65 -2.07 16 9 C 0.09 1.90 4.81 71.98 0.35 2.24 16 10 O -0.36 -9.41 7.10 -55.42 -0.39 -9.80 16 11 C 0.64 21.37 8.70 129.79 1.13 22.50 16 12 O -0.61 -24.87 15.80 19.80 0.31 -24.56 16 13 N -0.69 -21.86 5.08 -570.25 -2.90 -24.75 16 14 C 0.18 6.99 2.35 44.96 0.11 7.09 16 15 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 16 C -0.10 -3.92 5.40 30.65 0.17 -3.76 16 17 C 0.01 0.43 5.96 30.10 0.18 0.61 16 18 C -0.50 -25.98 5.51 -16.17 -0.09 -26.07 16 19 C 0.03 1.42 5.46 84.65 0.46 1.88 16 20 N -0.93 -53.37 12.74 21.45 0.27 -53.10 16 21 Si 0.94 42.93 27.53 68.60 1.89 44.82 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.25 -10.90 6.10 99.48 0.61 -10.29 16 25 C -0.02 -0.95 5.59 30.11 0.17 -0.79 16 26 C -0.11 -4.43 5.50 30.66 0.17 -4.26 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.68 6.43 -2.38 -0.02 0.66 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.97 6.29 -2.39 -0.02 0.95 16 37 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 38 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 1.11 5.89 -2.39 -0.01 1.10 16 41 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 42 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 43 H 0.42 10.67 8.71 -92.71 -0.81 9.87 16 44 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 47 H 0.04 1.97 7.08 -2.39 -0.02 1.95 16 48 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.04 1.73 4.59 -2.39 -0.01 1.72 16 51 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 52 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -62.05 397.49 3.76 -58.29 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.04 Total: 18.50 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 4.61 Total: -9.40 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.62 Total: -77.85 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.08 Total: -34.36 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.89 Total: 44.82 kcal Total: -62.05 3.76 -58.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193972734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.292 kcal (2) G-P(sol) polarization free energy of solvation -62.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds