Wall clock time and date at job start Fri Apr 10 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47201 * 2 1 4 4 C 1.52998 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47195 * 174.72778 * 4 3 2 6 6 H 1.08997 * 109.47066 * 305.63034 * 5 4 3 7 7 C 1.53002 * 109.47249 * 185.63229 * 5 4 3 8 8 C 1.52999 * 109.47433 * 65.79615 * 7 5 4 9 9 C 1.53001 * 109.47564 * 65.62867 * 5 4 3 10 10 O 1.45193 * 109.47625 * 185.00018 * 9 5 4 11 11 C 1.34639 * 117.00416 * 179.97438 * 10 9 5 12 12 O 1.21509 * 119.99346 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00133 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99757 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.41468 * 35.14031 * 14 13 11 16 16 C 1.52960 * 109.40922 * 155.00033 * 14 13 11 17 17 C 1.53237 * 109.40079 * 183.70483 * 16 14 13 18 18 C 1.51265 * 108.53397 * 305.37175 * 17 16 14 19 19 C 1.37883 * 120.85147 * 231.32544 * 18 17 16 20 20 N 1.31521 * 119.99567 * 0.02562 * 19 18 17 21 21 Si 1.86795 * 120.00436 * 180.02562 * 19 18 17 22 22 H 1.48498 * 109.47452 * 90.00066 * 21 19 18 23 23 H 1.48503 * 109.47375 * 210.00180 * 21 19 18 24 24 H 1.48498 * 109.46999 * 329.99786 * 21 19 18 25 25 C 1.51271 * 118.30544 * 51.34986 * 18 17 16 26 26 C 1.52955 * 109.41413 * 275.34972 * 14 13 11 27 27 H 1.09004 * 109.47199 * 60.00093 * 1 2 3 28 28 H 1.09007 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47073 * 299.99812 * 1 2 3 30 30 H 1.09001 * 109.47415 * 120.00380 * 2 1 3 31 31 H 1.09000 * 109.47073 * 240.00187 * 2 1 3 32 32 H 1.08997 * 109.47604 * 300.00134 * 3 2 1 33 33 H 1.09000 * 109.46954 * 60.00114 * 3 2 1 34 34 H 1.09003 * 109.47358 * 294.72670 * 4 3 2 35 35 H 1.08999 * 109.47267 * 54.72394 * 4 3 2 36 36 H 1.09003 * 109.47236 * 185.80310 * 7 5 4 37 37 H 1.09002 * 109.46768 * 305.79468 * 7 5 4 38 38 H 1.09004 * 109.46877 * 54.67367 * 8 7 5 39 39 H 1.08998 * 109.47203 * 174.67073 * 8 7 5 40 40 H 1.08997 * 109.47119 * 294.68143 * 8 7 5 41 41 H 1.08999 * 109.46967 * 305.00829 * 9 5 4 42 42 H 1.08999 * 109.46674 * 65.00083 * 9 5 4 43 43 H 0.96998 * 119.99731 * 0.02562 * 13 11 10 44 44 H 1.08997 * 109.48514 * 303.68356 * 16 14 13 45 45 H 1.08997 * 109.48239 * 63.71396 * 16 14 13 46 46 H 1.08994 * 109.62915 * 65.08793 * 17 16 14 47 47 H 1.09000 * 109.62159 * 185.47110 * 17 16 14 48 48 H 0.97002 * 119.99879 * 179.97438 * 20 19 18 49 49 H 1.08997 * 109.62386 * 68.36315 * 25 18 17 50 50 H 1.08993 * 109.62942 * 188.93586 * 25 18 17 51 51 H 1.09000 * 109.48546 * 296.27867 * 26 14 13 52 52 H 1.09005 * 109.48325 * 56.31651 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8788 -0.1319 6 1 3.6371 3.3417 -1.0137 7 6 5.6036 2.8681 -0.2724 8 6 5.9894 2.1966 -1.5919 9 6 3.6884 3.6762 1.1138 10 8 4.0677 5.0666 0.9376 11 6 3.7903 5.9090 1.9506 12 8 3.2466 5.4935 2.9546 13 7 4.1158 7.2131 1.8509 14 6 3.8145 8.1295 2.9535 15 1 3.9349 7.6068 3.9023 16 6 4.7750 9.3189 2.9027 17 6 4.5210 10.2301 4.1083 18 6 3.0572 10.6111 4.1231 19 6 2.6711 11.9311 4.2212 20 7 3.5804 12.8778 4.3030 21 14 0.8567 12.3749 4.2381 22 1 0.3625 12.3849 5.6384 23 1 0.6706 13.7204 3.6379 24 1 0.0946 11.3723 3.4513 25 6 2.0276 9.5069 4.0280 26 6 2.3721 8.6221 2.8255 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9330 1.0127 0.9343 35 1 3.9337 0.8489 -0.8381 36 1 5.9765 3.8923 -0.2633 37 1 6.0411 2.3148 0.5585 38 1 5.4758 2.6924 -2.4157 39 1 7.0670 2.2729 -1.7370 40 1 5.7000 1.1461 -1.5632 41 1 2.6108 3.6097 1.2638 42 1 4.2022 3.2669 1.9835 43 1 4.5495 7.5448 1.0492 44 1 5.8029 8.9575 2.9304 45 1 4.6113 9.8794 1.9823 46 1 4.7705 9.6996 5.0272 47 1 5.1348 11.1269 4.0251 48 1 3.3089 13.8065 4.3716 49 1 2.0463 8.9095 4.9395 50 1 1.0370 9.9407 3.8916 51 1 2.2651 9.1992 1.9070 52 1 1.6969 7.7667 2.7983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193972735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:51 Heat of formation + Delta-G solvation = -139.542935 kcal Electronic energy + Delta-G solvation = -26363.529822 eV Core-core repulsion = 22746.850771 eV Total energy + Delta-G solvation = -3616.679051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.24512 -38.27330 -37.15322 -35.70053 -34.56859 -33.77209 -31.59167 -30.85264 -29.69628 -28.49701 -27.14851 -24.70558 -23.32853 -22.53247 -21.54996 -21.32556 -20.70739 -20.20385 -19.63235 -18.21063 -16.78682 -16.26680 -16.04311 -15.68410 -15.15315 -14.84934 -14.47774 -14.36177 -14.29364 -13.65439 -13.45222 -13.29341 -13.12397 -12.89300 -12.69682 -12.52480 -12.33229 -12.14430 -12.05266 -11.78624 -11.67003 -11.59478 -11.36998 -11.03903 -11.03316 -10.95127 -10.83538 -10.73667 -10.67855 -10.57008 -10.33415 -10.26461 -10.08831 -9.97721 -9.55825 -9.04918 -8.90553 -8.50859 -8.34706 -6.11615 -4.02541 2.46506 3.18687 3.27873 3.36016 3.37290 4.30361 4.35562 4.37919 4.49410 4.64662 4.80871 4.84529 4.89358 5.05593 5.16062 5.19048 5.23252 5.31731 5.34781 5.38986 5.45188 5.48216 5.59338 5.66652 5.68719 5.71635 5.74118 5.84568 5.85084 5.89799 5.96831 6.04239 6.09068 6.14308 6.16350 6.39573 6.46377 6.54607 6.69692 6.79150 6.88052 6.94271 7.09492 7.21338 7.42685 7.63251 7.69411 7.74837 7.89762 8.36272 8.71405 8.94404 9.53165 10.97765 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.002527 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.313958 B =11076.199172 C =12185.549095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.087 4.087 6 H 0.082 0.918 7 C -0.121 4.121 8 C -0.152 4.152 9 C 0.090 3.910 10 O -0.376 6.376 11 C 0.641 3.359 12 O -0.577 6.577 13 N -0.702 5.702 14 C 0.170 3.830 15 H 0.080 0.920 16 C -0.114 4.114 17 C 0.014 3.986 18 C -0.488 4.488 19 C 0.076 3.924 20 N -0.890 5.890 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.264 1.264 25 C -0.019 4.019 26 C -0.115 4.115 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.007 0.993 47 H 0.062 0.938 48 H 0.264 0.736 49 H 0.020 0.980 50 H 0.036 0.964 51 H 0.052 0.948 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -22.132 -11.904 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.150 4.150 5 C -0.106 4.106 6 H 0.100 0.900 7 C -0.158 4.158 8 C -0.209 4.209 9 C 0.015 3.985 10 O -0.290 6.290 11 C 0.394 3.606 12 O -0.466 6.466 13 N -0.359 5.359 14 C 0.068 3.932 15 H 0.099 0.901 16 C -0.153 4.153 17 C -0.024 4.024 18 C -0.507 4.507 19 C -0.127 4.127 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.189 1.189 25 C -0.057 4.057 26 C -0.154 4.154 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.071 0.929 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.873 -22.203 -11.397 24.973 hybrid contribution -0.846 0.435 -0.330 1.007 sum 0.028 -21.768 -11.728 24.726 Atomic orbital electron populations 1.21790 0.95920 1.01494 1.02000 1.21522 0.95900 0.96847 1.01862 1.21751 0.95281 0.96936 1.02569 1.21644 0.95509 0.95151 1.02737 1.21299 0.96719 0.94973 0.97559 0.89998 1.21566 0.94545 1.01811 0.97908 1.21812 1.01139 1.00520 0.97440 1.23013 1.00546 0.76484 0.98422 1.86195 1.78177 1.20937 1.43732 1.18259 0.78254 0.82611 0.81503 1.90975 1.47244 1.77137 1.31218 1.45330 1.63407 1.04685 1.22524 1.21135 0.96371 0.88280 0.87365 0.90145 1.21969 0.95226 0.95309 1.02753 1.19345 0.96782 0.95320 0.90985 1.20049 0.91067 0.90152 1.49480 1.24847 0.97449 0.95860 0.94497 1.69836 1.33084 1.00316 1.49535 0.86672 0.85856 0.77238 0.78672 1.20375 1.21667 1.18926 1.19796 0.97105 0.95430 0.93347 1.21941 0.94257 0.98178 1.01023 0.92762 0.92895 0.92608 0.92060 0.92161 0.91758 0.91598 0.91595 0.90768 0.91023 0.91998 0.92686 0.92803 0.92717 0.91158 0.91476 0.76641 0.94364 0.92467 0.97456 0.91936 0.92577 0.96177 0.94513 0.92882 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.13 -0.96 4.86 -26.73 -0.13 -1.09 16 4 C -0.11 -0.81 4.56 -26.73 -0.12 -0.93 16 5 C -0.09 -0.77 2.08 -90.62 -0.19 -0.96 16 6 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.12 -1.03 5.35 -26.73 -0.14 -1.17 16 8 C -0.15 -1.06 9.56 37.16 0.36 -0.71 16 9 C 0.09 1.08 4.72 37.16 0.18 1.25 16 10 O -0.38 -5.48 9.72 -40.32 -0.39 -5.88 16 11 C 0.64 11.33 8.71 54.05 0.47 11.80 16 12 O -0.58 -12.00 15.80 -19.28 -0.30 -12.31 16 13 N -0.70 -11.89 5.08 -58.77 -0.30 -12.19 16 14 C 0.17 3.37 2.35 -67.97 -0.16 3.21 16 15 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 16 C -0.11 -2.31 5.40 -26.63 -0.14 -2.45 16 17 C 0.01 0.33 5.96 -27.48 -0.16 0.17 16 18 C -0.49 -12.73 5.51 -98.92 -0.55 -13.27 16 19 C 0.08 2.06 5.46 -17.81 -0.10 1.96 16 20 N -0.89 -25.23 12.74 55.43 0.71 -24.53 16 21 Si 0.89 21.01 27.53 -169.99 -4.68 16.33 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -6.07 6.10 56.52 0.34 -5.73 16 25 C -0.02 -0.44 5.59 -27.48 -0.15 -0.60 16 26 C -0.11 -2.45 5.50 -26.64 -0.15 -2.59 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.57 6.73 -51.93 -0.35 0.22 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.46 6.47 -51.93 -0.34 0.13 16 36 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.34 6.73 -51.93 -0.35 -0.01 16 41 H 0.07 0.87 6.48 -51.93 -0.34 0.53 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.40 5.72 8.71 -40.82 -0.36 5.36 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.06 1.65 7.08 -51.93 -0.37 1.28 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.04 0.87 4.59 -51.93 -0.24 0.63 16 51 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -29.29 399.56 -9.66 -38.95 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -9.93 Total: 0.66 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.78 Total: -7.06 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.41 Total: -36.72 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.70 Total: -18.18 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.68 Total: 16.33 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.29 -9.66 -38.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193972735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.598 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds