Wall clock time and date at job start Fri Apr 10 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47201 * 2 1 4 4 C 1.52998 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47195 * 174.72778 * 4 3 2 6 6 H 1.08997 * 109.47066 * 305.63034 * 5 4 3 7 7 C 1.53002 * 109.47249 * 185.63229 * 5 4 3 8 8 C 1.52999 * 109.47433 * 65.79615 * 7 5 4 9 9 C 1.53001 * 109.47564 * 65.62867 * 5 4 3 10 10 O 1.45193 * 109.47625 * 185.00018 * 9 5 4 11 11 C 1.34639 * 117.00416 * 179.97438 * 10 9 5 12 12 O 1.21509 * 119.99346 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00133 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99757 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.41468 * 35.14031 * 14 13 11 16 16 C 1.52960 * 109.40922 * 155.00033 * 14 13 11 17 17 C 1.53237 * 109.40079 * 183.70483 * 16 14 13 18 18 C 1.51265 * 108.53397 * 305.37175 * 17 16 14 19 19 C 1.37883 * 120.85147 * 231.32544 * 18 17 16 20 20 N 1.31521 * 119.99567 * 0.02562 * 19 18 17 21 21 Si 1.86795 * 120.00436 * 180.02562 * 19 18 17 22 22 H 1.48498 * 109.47452 * 90.00066 * 21 19 18 23 23 H 1.48503 * 109.47375 * 210.00180 * 21 19 18 24 24 H 1.48498 * 109.46999 * 329.99786 * 21 19 18 25 25 C 1.51271 * 118.30544 * 51.34986 * 18 17 16 26 26 C 1.52955 * 109.41413 * 275.34972 * 14 13 11 27 27 H 1.09004 * 109.47199 * 60.00093 * 1 2 3 28 28 H 1.09007 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47073 * 299.99812 * 1 2 3 30 30 H 1.09001 * 109.47415 * 120.00380 * 2 1 3 31 31 H 1.09000 * 109.47073 * 240.00187 * 2 1 3 32 32 H 1.08997 * 109.47604 * 300.00134 * 3 2 1 33 33 H 1.09000 * 109.46954 * 60.00114 * 3 2 1 34 34 H 1.09003 * 109.47358 * 294.72670 * 4 3 2 35 35 H 1.08999 * 109.47267 * 54.72394 * 4 3 2 36 36 H 1.09003 * 109.47236 * 185.80310 * 7 5 4 37 37 H 1.09002 * 109.46768 * 305.79468 * 7 5 4 38 38 H 1.09004 * 109.46877 * 54.67367 * 8 7 5 39 39 H 1.08998 * 109.47203 * 174.67073 * 8 7 5 40 40 H 1.08997 * 109.47119 * 294.68143 * 8 7 5 41 41 H 1.08999 * 109.46967 * 305.00829 * 9 5 4 42 42 H 1.08999 * 109.46674 * 65.00083 * 9 5 4 43 43 H 0.96998 * 119.99731 * 0.02562 * 13 11 10 44 44 H 1.08997 * 109.48514 * 303.68356 * 16 14 13 45 45 H 1.08997 * 109.48239 * 63.71396 * 16 14 13 46 46 H 1.08994 * 109.62915 * 65.08793 * 17 16 14 47 47 H 1.09000 * 109.62159 * 185.47110 * 17 16 14 48 48 H 0.97002 * 119.99879 * 179.97438 * 20 19 18 49 49 H 1.08997 * 109.62386 * 68.36315 * 25 18 17 50 50 H 1.08993 * 109.62942 * 188.93586 * 25 18 17 51 51 H 1.09000 * 109.48546 * 296.27867 * 26 14 13 52 52 H 1.09005 * 109.48325 * 56.31651 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8788 -0.1319 6 1 3.6371 3.3417 -1.0137 7 6 5.6036 2.8681 -0.2724 8 6 5.9894 2.1966 -1.5919 9 6 3.6884 3.6762 1.1138 10 8 4.0677 5.0666 0.9376 11 6 3.7903 5.9090 1.9506 12 8 3.2466 5.4935 2.9546 13 7 4.1158 7.2131 1.8509 14 6 3.8145 8.1295 2.9535 15 1 3.9349 7.6068 3.9023 16 6 4.7750 9.3189 2.9027 17 6 4.5210 10.2301 4.1083 18 6 3.0572 10.6111 4.1231 19 6 2.6711 11.9311 4.2212 20 7 3.5804 12.8778 4.3030 21 14 0.8567 12.3749 4.2381 22 1 0.3625 12.3849 5.6384 23 1 0.6706 13.7204 3.6379 24 1 0.0946 11.3723 3.4513 25 6 2.0276 9.5069 4.0280 26 6 2.3721 8.6221 2.8255 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9330 1.0127 0.9343 35 1 3.9337 0.8489 -0.8381 36 1 5.9765 3.8923 -0.2633 37 1 6.0411 2.3148 0.5585 38 1 5.4758 2.6924 -2.4157 39 1 7.0670 2.2729 -1.7370 40 1 5.7000 1.1461 -1.5632 41 1 2.6108 3.6097 1.2638 42 1 4.2022 3.2669 1.9835 43 1 4.5495 7.5448 1.0492 44 1 5.8029 8.9575 2.9304 45 1 4.6113 9.8794 1.9823 46 1 4.7705 9.6996 5.0272 47 1 5.1348 11.1269 4.0251 48 1 3.3089 13.8065 4.3716 49 1 2.0463 8.9095 4.9395 50 1 1.0370 9.9407 3.8916 51 1 2.2651 9.1992 1.9070 52 1 1.6969 7.7667 2.7983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193972735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:50 Heat of formation + Delta-G solvation = -154.489276 kcal Electronic energy + Delta-G solvation = -26364.177943 eV Core-core repulsion = 22746.850771 eV Total energy + Delta-G solvation = -3617.327173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59343 -39.43425 -38.42725 -36.97717 -35.49591 -35.20906 -33.43001 -31.54547 -31.46093 -29.56536 -28.66668 -25.55368 -24.23412 -23.91995 -23.35478 -22.22221 -21.88133 -21.34588 -20.93736 -19.64664 -18.04822 -17.93837 -17.47403 -16.58605 -16.40638 -16.16529 -15.75907 -15.39878 -15.18371 -14.98662 -14.64780 -14.39520 -14.19888 -14.07880 -13.99571 -13.80466 -13.79980 -13.49033 -13.18819 -12.81120 -12.79312 -12.66222 -12.57961 -12.36953 -12.25326 -12.02392 -11.96155 -11.89317 -11.75172 -11.67846 -11.57988 -11.45400 -11.39871 -11.18756 -11.08976 -10.90987 -10.72705 -10.54730 -10.01529 -8.16680 -6.11087 1.17221 1.39939 1.43056 1.50588 1.76877 2.41650 3.07477 3.24743 3.66342 3.73001 3.94178 3.99834 4.13672 4.15794 4.17533 4.29349 4.36910 4.44912 4.46173 4.51203 4.60147 4.69815 4.70458 4.77957 4.79456 4.83198 4.86804 4.95480 5.01832 5.04496 5.05615 5.09882 5.12851 5.15656 5.20592 5.22840 5.24620 5.32565 5.33346 5.42686 5.45526 5.51814 5.53195 5.54624 5.56949 5.65496 5.75690 5.82042 6.34511 6.48104 6.94217 7.34810 7.47122 8.93640 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.002527 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.313958 B =11076.199172 C =12185.549095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C -0.128 4.128 4 C -0.106 4.106 5 C -0.078 4.078 6 H 0.083 0.917 7 C -0.120 4.120 8 C -0.149 4.149 9 C 0.084 3.916 10 O -0.367 6.367 11 C 0.644 3.356 12 O -0.610 6.610 13 N -0.692 5.692 14 C 0.183 3.817 15 H 0.062 0.938 16 C -0.101 4.101 17 C 0.009 3.991 18 C -0.499 4.499 19 C 0.026 3.974 20 N -0.927 5.927 21 Si 0.937 3.063 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.251 1.251 25 C -0.020 4.020 26 C -0.108 4.108 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.416 0.584 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.000 1.000 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.016 0.984 50 H 0.038 0.962 51 H 0.057 0.943 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -24.060 -13.670 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.165 4.165 4 C -0.144 4.144 5 C -0.096 4.096 6 H 0.101 0.899 7 C -0.158 4.158 8 C -0.206 4.206 9 C 0.010 3.990 10 O -0.280 6.280 11 C 0.397 3.603 12 O -0.502 6.502 13 N -0.350 5.350 14 C 0.080 3.920 15 H 0.080 0.920 16 C -0.139 4.139 17 C -0.029 4.029 18 C -0.518 4.518 19 C -0.173 4.173 20 N -0.567 5.567 21 Si 0.764 3.236 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.176 1.176 25 C -0.058 4.058 26 C -0.147 4.147 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.252 0.748 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.034 0.966 50 H 0.056 0.944 51 H 0.076 0.924 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.651 -24.157 -13.203 27.537 hybrid contribution -0.732 0.956 0.242 1.228 sum -0.081 -23.201 -12.960 26.576 Atomic orbital electron populations 1.21809 0.96130 1.01881 1.01593 1.21513 0.95733 0.96274 1.02430 1.21737 0.95547 0.97419 1.01820 1.21623 0.95160 0.94013 1.03580 1.21299 0.97127 0.95389 0.95823 0.89857 1.21555 0.94045 1.01149 0.99049 1.21786 1.01402 1.01046 0.96334 1.23327 1.00335 0.75230 1.00122 1.86224 1.77701 1.21896 1.42219 1.18312 0.77641 0.82874 0.81500 1.90958 1.48715 1.77788 1.32711 1.44965 1.63330 1.04331 1.22388 1.20737 0.95438 0.88260 0.87574 0.91973 1.21731 0.96741 0.94676 1.00740 1.19304 0.95896 0.95110 0.92605 1.20577 0.92371 0.90785 1.48090 1.25557 1.00870 0.96091 0.94759 1.69953 1.34767 1.00537 1.51428 0.85858 0.81904 0.77140 0.78717 1.20306 1.21658 1.17571 1.19794 0.96572 0.95132 0.94343 1.21826 0.95188 0.97782 0.99938 0.92712 0.92137 0.93495 0.91984 0.91052 0.91739 0.93151 0.91431 0.89015 0.92587 0.91823 0.92578 0.92487 0.91482 0.91661 0.91896 0.74788 0.91976 0.92085 0.98199 0.94485 0.92723 0.96599 0.94360 0.92381 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.42 5.93 30.59 0.18 -1.24 16 3 C -0.13 -1.73 4.86 30.59 0.15 -1.58 16 4 C -0.11 -1.30 4.56 30.59 0.14 -1.16 16 5 C -0.08 -1.24 2.08 -10.79 -0.02 -1.26 16 6 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 7 C -0.12 -1.83 5.35 30.59 0.16 -1.66 16 8 C -0.15 -1.71 9.56 71.98 0.69 -1.02 16 9 C 0.08 1.93 4.72 71.98 0.34 2.27 16 10 O -0.37 -10.19 9.72 -55.48 -0.54 -10.73 16 11 C 0.64 21.93 8.71 129.79 1.13 23.06 16 12 O -0.61 -25.03 15.80 19.81 0.31 -24.71 16 13 N -0.69 -22.17 5.08 -570.27 -2.90 -25.06 16 14 C 0.18 7.02 2.35 44.96 0.11 7.12 16 15 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 16 C -0.10 -3.95 5.40 30.66 0.17 -3.78 16 17 C 0.01 0.43 5.96 30.11 0.18 0.61 16 18 C -0.50 -26.00 5.51 -16.17 -0.09 -26.08 16 19 C 0.03 1.41 5.46 84.66 0.46 1.87 16 20 N -0.93 -53.44 12.74 21.45 0.27 -53.17 16 21 Si 0.94 42.92 27.53 68.60 1.89 44.81 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.25 -10.87 6.10 99.48 0.61 -10.27 16 25 C -0.02 -0.95 5.59 30.11 0.17 -0.78 16 26 C -0.11 -4.46 5.50 30.66 0.17 -4.29 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.84 6.73 -2.39 -0.02 0.82 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.85 6.47 -2.39 -0.02 0.84 16 36 H 0.06 1.03 7.68 -2.39 -0.02 1.01 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.61 6.73 -2.39 -0.02 0.60 16 41 H 0.07 1.57 6.48 -2.39 -0.02 1.56 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.42 10.85 8.71 -92.71 -0.81 10.04 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.04 1.98 7.08 -2.39 -0.02 1.97 16 48 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.04 1.75 4.59 -2.39 -0.01 1.74 16 51 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 52 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -62.45 399.56 3.65 -58.80 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.03 Total: 19.22 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.64 Total: -9.15 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.62 Total: -78.23 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.23 Total: -35.44 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.89 Total: 44.81 kcal Total: -62.45 3.65 -58.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193972735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.689 kcal (2) G-P(sol) polarization free energy of solvation -62.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds