Wall clock time and date at job start Fri Apr 10 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47266 * 2 1 4 4 C 1.52999 * 109.47190 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46695 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47284 * 304.99133 * 5 4 3 7 7 C 1.52998 * 109.47524 * 64.99630 * 5 4 3 8 8 C 1.52993 * 109.47109 * 185.11446 * 7 5 4 9 9 C 1.53005 * 109.46806 * 184.99668 * 5 4 3 10 10 O 1.45193 * 109.47193 * 174.77058 * 9 5 4 11 11 C 1.34635 * 116.99979 * 179.97438 * 10 9 5 12 12 O 1.21506 * 120.00500 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99841 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99844 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.41086 * 35.14366 * 14 13 11 16 16 C 1.52954 * 109.41314 * 155.00430 * 14 13 11 17 17 C 1.53224 * 109.40736 * 183.63479 * 16 14 13 18 18 C 1.51270 * 108.53489 * 305.37244 * 17 16 14 19 19 C 1.37872 * 120.85133 * 231.31898 * 18 17 16 20 20 N 1.31514 * 120.00361 * 176.43326 * 19 18 17 21 21 Si 1.86801 * 119.99810 * 356.43722 * 19 18 17 22 22 H 1.48502 * 109.47199 * 59.99630 * 21 19 18 23 23 H 1.48500 * 109.47232 * 299.99687 * 21 19 18 24 24 H 1.48508 * 109.47237 * 179.97438 * 21 19 18 25 25 C 1.51267 * 118.29997 * 51.59882 * 18 17 16 26 26 C 1.52955 * 109.35577 * 275.32277 * 14 13 11 27 27 H 1.09001 * 109.46925 * 299.99677 * 1 2 3 28 28 H 1.08997 * 109.47360 * 59.99748 * 1 2 3 29 29 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46925 * 240.00323 * 2 1 3 31 31 H 1.08997 * 109.47360 * 120.00252 * 2 1 3 32 32 H 1.09005 * 109.47161 * 59.99883 * 3 2 1 33 33 H 1.09002 * 109.46696 * 300.00350 * 3 2 1 34 34 H 1.08988 * 109.47554 * 59.99783 * 4 3 2 35 35 H 1.09006 * 109.46668 * 299.99467 * 4 3 2 36 36 H 1.08999 * 109.47121 * 305.11800 * 7 5 4 37 37 H 1.09004 * 109.47338 * 65.11689 * 7 5 4 38 38 H 1.08999 * 109.47161 * 171.87157 * 8 7 5 39 39 H 1.09005 * 109.47525 * 291.87433 * 8 7 5 40 40 H 1.09004 * 109.47556 * 51.87469 * 8 7 5 41 41 H 1.09003 * 109.46887 * 54.77126 * 9 5 4 42 42 H 1.08997 * 109.46932 * 294.77240 * 9 5 4 43 43 H 0.97000 * 120.00038 * 0.02562 * 13 11 10 44 44 H 1.09000 * 109.48142 * 63.65063 * 16 14 13 45 45 H 1.09005 * 109.48323 * 303.61796 * 16 14 13 46 46 H 1.09001 * 109.62783 * 185.65921 * 17 16 14 47 47 H 1.09003 * 109.78126 * 65.17683 * 17 16 14 48 48 H 0.96999 * 119.99498 * 0.32727 * 20 19 18 49 49 H 1.09003 * 109.62718 * 68.11552 * 25 18 17 50 50 H 1.09001 * 109.62897 * 188.68248 * 25 18 17 51 51 H 1.09001 * 109.48369 * 296.30878 * 26 14 13 52 52 H 1.08997 * 109.48422 * 56.34034 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 3.6756 3.5684 1.3078 8 6 4.0731 5.0449 1.2558 9 6 5.6047 2.8869 -0.1263 10 8 6.0784 4.2538 -0.2501 11 6 7.4076 4.4316 -0.3706 12 8 8.1514 3.4708 -0.3726 13 7 7.9130 5.6753 -0.4899 14 6 9.3594 5.8688 -0.6204 15 1 9.7839 5.0481 -1.1986 16 6 9.6327 7.1914 -1.3385 17 6 11.1410 7.3505 -1.5558 18 6 11.8366 7.2114 -0.2197 19 6 12.7390 8.1611 0.2099 20 7 13.2813 8.0605 1.4038 21 14 13.1914 9.5909 -0.9039 22 1 11.9711 10.3743 -1.2240 23 1 13.7891 9.0703 -2.1597 24 1 14.1733 10.4651 -0.2131 25 6 11.5216 6.0003 0.6301 26 6 9.9952 5.8929 0.7705 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8907 35 1 3.9336 0.9285 0.8892 36 1 2.5970 3.4869 1.4420 37 1 4.1831 3.0847 2.1425 38 1 3.6595 5.5632 2.1209 39 1 5.1598 5.1293 1.2671 40 1 3.6832 5.4942 0.3424 41 1 5.8968 2.3197 -1.0101 42 1 6.0433 2.4293 0.7605 43 1 7.3193 6.4424 -0.4887 44 1 9.2636 8.0178 -0.7311 45 1 9.1242 7.1933 -2.3027 46 1 11.3486 8.3347 -1.9758 47 1 11.4991 6.5787 -2.2371 48 1 13.0500 7.3154 1.9803 49 1 11.9118 5.1036 0.1486 50 1 11.9738 6.1164 1.6151 51 1 9.6176 6.7501 1.3280 52 1 9.7436 4.9747 1.3012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193972736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:55 Heat of formation + Delta-G solvation = -139.262554 kcal Electronic energy + Delta-G solvation = -26435.539748 eV Core-core repulsion = 22818.872855 eV Total energy + Delta-G solvation = -3616.666893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31424 -38.30834 -37.21895 -35.83821 -34.38169 -33.93599 -31.58778 -30.88660 -29.72869 -28.55246 -26.92671 -24.68196 -23.12412 -22.45251 -21.81709 -21.36934 -20.59363 -20.23488 -19.76585 -18.18485 -16.85925 -16.61983 -16.30526 -15.87298 -15.18844 -14.95172 -14.36014 -14.22047 -13.93944 -13.87278 -13.64607 -13.28861 -13.13278 -12.94081 -12.68574 -12.49853 -12.36604 -12.24428 -11.81533 -11.66905 -11.64008 -11.50888 -11.43481 -11.11386 -11.04379 -10.89624 -10.80322 -10.71239 -10.67251 -10.61285 -10.27714 -10.16155 -10.06689 -10.00090 -9.61578 -9.45102 -8.71966 -8.44258 -8.27290 -6.45366 -4.03655 2.41668 3.15703 3.38741 3.41017 3.60454 4.18839 4.42220 4.46100 4.52585 4.64287 4.65522 4.82865 4.94575 5.04456 5.20158 5.23456 5.24699 5.30053 5.34877 5.39128 5.45332 5.48428 5.55388 5.60257 5.64742 5.71321 5.77257 5.78945 5.83338 5.93548 5.97920 6.03147 6.06848 6.14093 6.31141 6.37022 6.38512 6.52025 6.61612 6.69021 6.76745 6.90281 6.96539 7.10111 7.29561 7.32523 7.58411 7.81308 8.04053 8.29644 8.67949 8.85565 9.59405 10.93017 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.038139 B = 0.002175 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.975636 B =12869.475716 C =12912.899313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.088 4.088 6 H 0.081 0.919 7 C -0.118 4.118 8 C -0.154 4.154 9 C 0.092 3.908 10 O -0.367 6.367 11 C 0.639 3.361 12 O -0.576 6.576 13 N -0.703 5.703 14 C 0.172 3.828 15 H 0.080 0.920 16 C -0.113 4.113 17 C -0.002 4.002 18 C -0.571 4.571 19 C 0.035 3.965 20 N -0.906 5.906 21 Si 1.063 2.937 22 H -0.285 1.285 23 H -0.285 1.285 24 H -0.287 1.287 25 C 0.004 3.996 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.399 0.601 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.030 0.970 47 H 0.016 0.984 48 H 0.272 0.728 49 H 0.009 0.991 50 H 0.039 0.961 51 H 0.051 0.949 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.594 -10.119 -2.832 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.151 4.151 5 C -0.107 4.107 6 H 0.100 0.900 7 C -0.155 4.155 8 C -0.211 4.211 9 C 0.017 3.983 10 O -0.282 6.282 11 C 0.391 3.609 12 O -0.466 6.466 13 N -0.361 5.361 14 C 0.071 3.929 15 H 0.098 0.902 16 C -0.152 4.152 17 C -0.040 4.040 18 C -0.590 4.590 19 C -0.171 4.171 20 N -0.541 5.541 21 Si 0.892 3.108 22 H -0.212 1.212 23 H -0.211 1.211 24 H -0.213 1.213 25 C -0.034 4.034 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.233 0.767 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.035 0.965 48 H 0.085 0.915 49 H 0.028 0.972 50 H 0.057 0.943 51 H 0.069 0.931 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -22.327 -9.294 -2.896 24.357 hybrid contribution -1.244 -1.182 0.146 1.722 sum -23.571 -10.476 -2.750 25.940 Atomic orbital electron populations 1.21776 0.95941 1.01537 1.01799 1.21544 0.95812 0.96959 1.02066 1.21654 0.94819 0.96781 1.02410 1.21558 0.95818 0.95133 1.02637 1.21330 0.92825 0.96853 0.99657 0.90017 1.21611 1.00915 0.96547 0.96446 1.21906 1.03132 0.95195 1.00862 1.22949 0.93612 0.79486 1.02273 1.86352 1.23083 1.32376 1.86351 1.18327 0.80900 0.84941 0.76726 1.90979 1.59310 1.40026 1.56235 1.45310 1.09745 1.04746 1.76258 1.21053 0.74731 0.98935 0.98198 0.90218 1.21898 1.00658 0.95144 0.97497 1.19503 0.90463 0.96639 0.97434 1.21015 1.26721 1.08423 1.02838 1.25777 0.93018 1.00429 0.97831 1.70829 1.42699 1.32670 1.07946 0.83603 0.76404 0.75791 0.75019 1.21198 1.21148 1.21314 1.19484 0.90075 0.96174 0.97682 1.22035 0.99760 0.98970 0.94572 0.92776 0.92774 0.92864 0.92049 0.92022 0.91516 0.91898 0.91536 0.91488 0.91757 0.92127 0.93558 0.90941 0.92860 0.91504 0.91395 0.76705 0.92305 0.94172 0.95125 0.96546 0.91507 0.97222 0.94304 0.93067 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.75 4.98 -26.73 -0.13 -0.88 16 4 C -0.11 -0.82 4.68 -26.73 -0.13 -0.94 16 5 C -0.09 -0.77 2.23 -90.62 -0.20 -0.97 16 6 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 7 C -0.12 -1.03 5.27 -26.74 -0.14 -1.17 16 8 C -0.15 -1.54 8.96 37.15 0.33 -1.21 16 9 C 0.09 1.08 4.82 37.16 0.18 1.26 16 10 O -0.37 -5.15 6.95 -40.31 -0.28 -5.43 16 11 C 0.64 11.14 8.71 54.06 0.47 11.61 16 12 O -0.58 -12.06 15.80 -19.28 -0.30 -12.37 16 13 N -0.70 -11.76 5.08 -58.77 -0.30 -12.06 16 14 C 0.17 3.42 2.35 -67.97 -0.16 3.26 16 15 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 16 C -0.11 -2.20 5.40 -26.64 -0.14 -2.35 16 17 C 0.00 -0.05 5.57 -27.49 -0.15 -0.20 16 18 C -0.57 -14.90 5.50 -98.92 -0.54 -15.45 16 19 C 0.03 0.96 5.46 -17.82 -0.10 0.86 16 20 N -0.91 -26.60 13.66 55.43 0.76 -25.84 16 21 Si 1.06 24.46 27.18 -169.99 -4.62 19.84 16 22 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.00 0.10 5.99 -27.26 -0.16 -0.06 16 26 C -0.11 -2.52 5.51 -26.41 -0.15 -2.67 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.41 6.46 -51.93 -0.34 0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.47 8.14 -51.94 -0.42 0.05 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 6.34 -51.93 -0.33 0.15 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.87 5.80 -51.93 -0.30 0.57 16 40 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.40 5.59 8.71 -40.82 -0.36 5.23 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.03 0.67 5.22 -51.93 -0.27 0.40 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.27 7.96 6.35 -40.82 -0.26 7.71 16 49 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.04 1.03 5.79 -51.93 -0.30 0.72 16 51 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -29.89 396.29 -9.38 -39.27 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -9.79 Total: 0.88 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.82 Total: -10.27 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.46 Total: -37.90 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.58 Total: -17.80 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.62 Total: 19.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.89 -9.38 -39.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193972736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.992 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds